TCONS_00005404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005404
Unique NameTCONS_00005404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005404 ID=TCONS_00005404|Name=TCONS_00005404|organism=Clytia hemisphaerica|type=transcript|length=366bp
ATCAAGGAGATGGAGGTGGAGACGATATGATGGCAAAATTTGACGGATTT
GAAAGAGATCCTGTTGATTACACAGATTACGTTTGGGATACTTTCAACGG
AAATTGTGATTGTTCATGTCAAACTAAGATTAAATTCTATAAAGTGTAAT
CATTTTGTTAGATACAGCTATATTAAAGACTTATATTTTACGAACGCTTT
TTTTGTCAGATGCTATTTTTCAGCCGGTCAGTTTCTATTATAGtaattgt
tttttgttgttgtttttttttgtacttATGTTCATTTAAAGTTTCAAGCA
AGCATAAAATATACTTTTCAGTTAAATGCAAAGTCGTATTTTTCCTGATA
GAACTTTAGACAATTC
Run BLAST on NCBI

transcript from alignment at sc0000052:664227..664592

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005404 ID=TCONS_00005404|Name=TCONS_00005404|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0000052:664227..664592 (Clytia hemisphaerica)
GAATTGTCTAAAGTTCTATCAGGAAAAATACGACTTTGCATTTAACTGAA
AAGTATATTTTATGCTTGCTTGAAACTTTAAATGAACATaagtacaaaaa
aaaacaacaacaaaaaacaattaCTATAATAGAAACTGACCGGCTGAAAA
ATAGCATCTGACAAAAAAAGCGTTCGTAAAATATAAGTCTTTAATATAGC
TGTATCTAACAAAATGATTACACTTTATAGAATTTAATCTTAGTTTGACA
TGAACAATCACAATTTCCGTTGAAAGTATCCCAAACGTAATCTGTGTAAT
CAACAGGATCTCTTTCAAATCCGTCAAATTTTGCCATCATATCGTCTCCA
CCTCCATCTCCTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003078XLOC_003078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005404-exon-sc0000052-1491911889:664227..664592TCONS_00005404-exon-sc0000052-1491911889:664227..664592Clytia hemisphaericaexon
TCONS_00005404-exon-sc0000052-1510915933:664227..664592TCONS_00005404-exon-sc0000052-1510915933:664227..664592Clytia hemisphaericaexon
TCONS_00005404-exon-sc0000052-1575043694:664227..664592TCONS_00005404-exon-sc0000052-1575043694:664227..664592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:664227..664592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.903891	0.440718	0	0	0	0	0.871571	0.54397	0.190423	0.707609	0.457882	0.300993	0.751437	1.56075	4.23439	1.10161	0.508911	0.173872	0.720642	0.502734	0.436967	0.319706	0.777288	0.471112	0.485234	1.51571	0	0	0.250812	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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