|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005391 ID=TCONS_00005391|Name=TCONS_00005391|organism=Clytia hemisphaerica|type=transcript|length=1271bp
GTTTTGCTCATGACAATAGAAAGAATCCACATGCCAAATATCAAGCCATA
TTATTATCTCTTTAAATTTGAGATTATTGACTGTAATTATTGCcgaattc
tttaaaattttcaactttcaaatttgtaaaaaagtgGAAACATTAGTTTT
AGTAAAAACCATACATTACTTTTAATTCACACAAAAAATACTTTCATAAT
TTGTATAAGAGTTGCAAAAATATACTGAAGTTTCTCTCATTTTTGATACG
ACCTTTGAAATTGGTGATGTCAGCCAGTCAGCCATTCACAAATTTAATTG
GTTTGAAAACTCGGAGGGACAACCCTGAATTTGTTAGGGATTTTATACAT
AGGTTTCGTAaagtttcccttttttccaggCACAATGGTCTTTTTCTCTG
TACACAatattttatgagaacatccaaaatttttttgaagcctgcggatg
ttcttaacttatgtatttagttttaagcctaaaaatgttcttaccttcat
cattttttgagcaattttgtccattttcctaagaaatcaggtgttttact
gtctgcaaagccttaaaatgttcttaacttgttcttaacattttggccat
cgaagccttatgttcttatatattgtgttcttataaaaaaacgtgtaggc
ttCCTCcagcttcttcaatttttgtttatttattgttGCATATACATGCA
CGCACTTAGAAGTATTATAGTAAAAAGTAgagtatatatatttttcttat
gagtttttttttggAGANCTGGCCattaaagccttatgttcttatatatt
gtgttcttataaaaaaacgtgtaggcttCCTCcagcttcttcaatttttg
tttatttattgttGCATATACATGCACGCACTTAGAAGTATTATAGTAAA
AAGTAgagtatatatatttttcttatgaGTTTTTTTTGGAGAAAGATTCT
TTGTACCTAGCTGGTTTGATGTCACGTTTTGTATTACGATAGTTTATAAT
ACGATATTATCATAATATTATCATATTATATGTCTATAGAAATAACTATT
ATTTGTATTAGCGATAATCTTAAAAACTCATCTTTGGGTCTTTCGACTTA
TTTGACATACCTACAAGATATGACTCAAAGACTGGACACGAACAGATGAG
ATTTAAGATAGTCGCTAAGCCATGTTAGTAtgttttataataataatatt
tgaaTAGTTCTTTATATATGAgataatcataattttcaacttAGTATTGT
AAGATATCGATTCTATTTGAC Run BLAST on NCBI transcript from alignment at sc0000052:405183..406453 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005391 ID=TCONS_00005391|Name=TCONS_00005391|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0000052:405183..406453 (Clytia hemisphaerica)
GTCAAATAGAATCGATATCTTACAATACTaagttgaaaattatgattatc
TCATATATAAAGAACTAttcaaatattattattataaaacaTACTAACAT
GGCTTAGCGACTATCTTAAATCTCATCTGTTCGTGTCCAGTCTTTGAGTC
ATATCTTGTAGGTATGTCAAATAAGTCGAAAGACCCAAAGATGAGTTTTT
AAGATTATCGCTAATACAAATAATAGTTATTTCTATAGACATATAATATG
ATAATATTATGATAATATCGTATTATAAACTATCGTAATACAAAACGTGA
CATCAAACCAGCTAGGTACAAAGAATCTTTCTCCAAAAAAAACtcataag
aaaaatatatatactcTACTTTTTACTATAATACTTCTAAGTGCGTGCAT
GTATATGCaacaataaataaacaaaaattgaagaagctgGAGGaagccta
cacgtttttttataagaacacaatatataagaacataaggctttaatGGC
CAGNTCTccaaaaaaaaactcataagaaaaatatatatactcTACTTTTT
ACTATAATACTTCTAAGTGCGTGCATGTATATGCaacaataaataaacaa
aaattgaagaagctgGAGGaagcctacacgtttttttataagaacacaat
atataagaacataaggcttcgatggccaaaatgttaagaacaagttaaga
acattttaaggctttgcagacagtaaaacacctgatttcttaggaaaatg
gacaaaattgctcaaaaaatgatgaaggtaagaacatttttaggcttaaa
actaaatacataagttaagaacatccgcaggcttcaaaaaaattttggat
gttctcataaaatatTGTGTACAGAGAAAAAGACCATTGTGcctggaaaa
aagggaaacttTACGAAACCTATGTATAAAATCCCTAACAAATTCAGGGT
TGTCCCTCCGAGTTTTCAAACCAATTAAATTTGTGAATGGCTGACTGGCT
GACATCACCAATTTCAAAGGTCGTATCAAAAATGAGAGAAACTTCAGTAT
ATTTTTGCAACTCTTATACAAATTATGAAAGTATTTTTTGTGTGAATTAA
AAGTAATGTATGGTTTTTACTAAAACTAATGTTTCcacttttttacaaat
ttgaaagttgaaaattttaaagaattcgGCAATAATTACAGTCAATAATC
TCAAATTTAAAGAGATAATAATATGGCTTGATATTTGGCATGTGGATTCT
TTCTATTGTCATGAGCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005391-exon-sc0000052-1491911889:405183..406453 | TCONS_00005391-exon-sc0000052-1491911889:405183..406453 | Clytia hemisphaerica | exon |
| TCONS_00005391-exon-sc0000052-1510915933:405183..406453 | TCONS_00005391-exon-sc0000052-1510915933:405183..406453 | Clytia hemisphaerica | exon |
| TCONS_00005391-exon-sc0000052-1575043694:405183..406453 | TCONS_00005391-exon-sc0000052-1575043694:405183..406453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:405183..406453 . |
Blast
The following BLAST results are available for this feature:
|
