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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005388 ID=TCONS_00005388|Name=TCONS_00005388|organism=Clytia hemisphaerica|type=transcript|length=884bp
CACGAGAAAAAAATCGTCAAGCCAACTATTAGATATTCCCATTTCTAAAA
GTAGTATAGTGTGCCGCTTTTCTTTTGAAGACACACCTCCATCTCAAGTG
AGCCTTTTTTGGAAGTCAGCAAGAAGAGCTCGAAAAAGTTGTCATTTTGG
AATATTGTTGATAATATATGCGTTGAATGAAAATCGTTTTATAATTTAAT
TGTTATAGATAATAAAAGTCTAATcgtctttgtttttcttttctttctgc
tGATCGGCTGAAGTACCGGCAACCGATTTCTTTGTTGTTCGCTCAAAAAC
ACTTTCTAACAAAGATGCAAAAGCTTCCCTTTCTTCATCATTTTTACCat
ttaaaatttcttcaacCATTTCTCGGATTTCATTtgaatcttcttttttc
ttcttttccccGCTAACGCTTGCTGCCTTCTTTTCCACCTTCTTTTCAAC
AGCAACTGATTTTTCAGCCGTTTTTTTGGattcaattttgtcttcgatcG
ATTTTTTCTCCGTCTTGGTCGATTTTGCTTCTTCCACTTTAGTATCAGCG
CTGATTTCGCTACTCTTCTTTTGTACGCATTCTCGTTTTCGAGTGTTACA
AAGTTCATTCGTTTCGTCTCTTTTCTTTTCCTCGATaacttcttttttct
ctttccgATCTCTATGCAATGCTCTCTTTTCTTCTTGAATAATTTCACGT
TTGCTGTTCTCGCGGCCGCtcatatcttttttttcttctcgtcTTGCTTC
CTCGTCAATCGCGCGGACGACTAGATCAACCAAATCGCGTAACGAATCAT
TATCCATGACAACAGTAGCCTTCTCTTCTCTAGAGGCTGTTTCACGCTTA
TCAGCGGTGTTCTCTTTCACACCTGATACATCAt Run BLAST on NCBI protein sequence of TCONS_00005388-protein >TCONS_00005388-protein ID=TCONS_00005388-protein|Name=TCONS_00005388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
DVSGVKENTADKRETASREEKATVVMDNDSLRDLVDLVVRAIDEEARREE
KKDMSGRENSKREIIQEEKRALHRDRKEKKEVIEEKKRDETNELCNTRKR
ECVQKKSSEISADTKVEEAKSTKTEKKSIEDKIESKKTAEKSVAVEKKVE
KKAASVSGEKKKKEDSNEIREMVEEILNGKNDEEREAFASLLESVFERTT
KKSVAGTSADQQKEKKNKDD Run BLAST on NCBI transcript from alignment at sc0000052:360026..360909 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005388 ID=TCONS_00005388|Name=TCONS_00005388|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at sc0000052:360026..360909 (Clytia hemisphaerica)
aTGATGTATCAGGTGTGAAAGAGAACACCGCTGATAAGCGTGAAACAGCC
TCTAGAGAAGAGAAGGCTACTGTTGTCATGGATAATGATTCGTTACGCGA
TTTGGTTGATCTAGTCGTCCGCGCGATTGACGAGGAAGCAAgacgagaag
aaaaaaaagatatgaGCGGCCGCGAGAACAGCAAACGTGAAATTATTCAA
GAAGAAAAGAGAGCATTGCATAGAGATcggaaagagaaaaaagaagttAT
CGAGGAAAAGAAAAGAGACGAAACGAATGAACTTTGTAACACTCGAAAAC
GAGAATGCGTACAAAAGAAGAGTAGCGAAATCAGCGCTGATACTAAAGTG
GAAGAAGCAAAATCGACCAAGACGGAGAAAAAATCgatcgaagacaaaat
tgaatCCAAAAAAACGGCTGAAAAATCAGTTGCTGTTGAAAAGAAGGTGG
AAAAGAAGGCAGCAAGCGTTAGCggggaaaagaagaaaaaagaagattca
AATGAAATCCGAGAAATGgttgaagaaattttaaatGGTAAAAATGATGA
AGAAAGGGAAGCTTTTGCATCTTTGTTAGAAAGTGTTTTTGAGCGAACAA
CAAAGAAATCGGTTGCCGGTACTTCAGCCGATCagcagaaagaaaagaaa
aacaaagacgATTAGACTTTTATTATCTATAACAATTAAATTATAAAACG
ATTTTCATTCAACGCATATATTATCAACAATATTCCAAAATGACAACTTT
TTCGAGCTCTTCTTGCTGACTTCCAAAAAAGGCTCACTTGAGATGGAGGT
GTGTCTTCAAAAGAAAAGCGGCACACTATACTACTTTTAGAAATGGGAAT
ATCTAATAGTTGGCTTGACGATTTTTTTCTCGTG Coding sequence (CDS) from alignment at sc0000052:360026..360909 >TCONS_00005388 ID=TCONS_00005388|Name=TCONS_00005388|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000052:360026..360909 (Clytia hemisphaerica)
GATGTATCAGGTGTGAAAGAGAACACCGCTGATAAGCGTGAAACAGCCTC
TAGAGAAGAGAAGGCTACTGTTGTCATGGATAATGATTCGTTACGCGATT
TGGTTGATCTAGTCGTCCGCGCGATTGACGAGGAAGCAAgacgagaagaa
aaaaaagatatgaGCGGCCGCGAGAACAGCAAACGTGAAATTATTCAAGA
AGAAAAGAGAGCATTGCATAGAGATcggaaagagaaaaaagaagttATCG
AGGAAAAGAAAAGAGACGAAACGAATGAACTTTGTAACACTCGAAAACGA
GAATGCGTACAAAAGAAGAGTAGCGAAATCAGCGCTGATACTAAAGTGGA
AGAAGCAAAATCGACCAAGACGGAGAAAAAATCgatcgaagacaaaattg
aatCCAAAAAAACGGCTGAAAAATCAGTTGCTGTTGAAAAGAAGGTGGAA
AAGAAGGCAGCAAGCGTTAGCggggaaaagaagaaaaaagaagattcaAA
TGAAATCCGAGAAATGgttgaagaaattttaaatGGTAAAAATGATGAAG
AAAGGGAAGCTTTTGCATCTTTGTTAGAAAGTGTTTTTGAGCGAACAACA
AAGAAATCGGTTGCCGGTACTTCAGCCGATCagcagaaagaaaagaaaaa
caaagacgATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005388-exon-sc0000052-1491911889:360026..360909 | TCONS_00005388-exon-sc0000052-1491911889:360026..360909 | Clytia hemisphaerica | exon |
| TCONS_00005388-exon-sc0000052-1510915933:360026..360909 | TCONS_00005388-exon-sc0000052-1510915933:360026..360909 | Clytia hemisphaerica | exon |
| TCONS_00005388-exon-sc0000052-1575043694:360026..360909 | TCONS_00005388-exon-sc0000052-1575043694:360026..360909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:360026..360909 . |
Blast
The following BLAST results are available for this feature:
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