TCONS_00005379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005379
Unique NameTCONS_00005379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005379 ID=TCONS_00005379|Name=TCONS_00005379|organism=Clytia hemisphaerica|type=transcript|length=272bp
GTCGCCGttaaaacattcaataataTACTTTAAGCCAAGATGCAATATGT
TTATTAAATACACGCTCACAGTATCTCTAGTCAGGGAAAACAATCACACA
TTCTAAAGTGTCTTTAGTCAGGAAAACgaccaaaacaatcacacaagttt
CGAAAGTTTAGAAAATCCACAAAAACTCTGACCTCATAAATGTAAGAACC
AAGcattaaagactttgttttggggTCACTTGGTAAACAAATCTCATATA
ACTTGTTCCAGAGATATTGTCC
Run BLAST on NCBI

transcript from alignment at sc0000052:20649..20920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005379 ID=TCONS_00005379|Name=TCONS_00005379|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0000052:20649..20920 (Clytia hemisphaerica)
GGACAATATCTCTGGAACAAGTTATATGAGATTTGTTTACCAAGTGAccc
caaaacaaagtctttaatgCTTGGTTCTTACATTTATGAGGTCAGAGTTT
TTGTGGATTTTCTAAACTTTCGaaacttgtgtgattgttttggtcGTTTT
CCTGACTAAAGACACTTTAGAATGTGTGATTGTTTTCCCTGACTAGAGAT
ACTGTGAGCGTGTATTTAATAAACATATTGCATCTTGGCTTAAAGTAtat
tattgaatgttttaaCGGCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003053XLOC_003053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005379-exon-sc0000052-1491911889:20649..20920TCONS_00005379-exon-sc0000052-1491911889:20649..20920Clytia hemisphaericaexon
TCONS_00005379-exon-sc0000052-1510915933:20649..20920TCONS_00005379-exon-sc0000052-1510915933:20649..20920Clytia hemisphaericaexon
TCONS_00005379-exon-sc0000052-1575043694:20649..20920TCONS_00005379-exon-sc0000052-1575043694:20649..20920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:20649..20920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.25287	2.40443	2.52908	1.19804	61.7648	32.1117	23.0371	20.8821	4.85068	4.86411	5.04093	2.60392	3.42774	3.97038	4.49218	3.24396	0	3.25323	4.01144	8.46238	15.9375	9.01153	10.9764	5.5474	2.54177	12.0565	31.2998	16.1943	21.2468	22.9809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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