TCONS_00005373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005373
Unique NameTCONS_00005373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005373 ID=TCONS_00005373|Name=TCONS_00005373|organism=Clytia hemisphaerica|type=transcript|length=3663bp
GAGAAATCAACACTAATGTCacaaaaatttgtgaaaaaccTTCTTATAAC
AGGTGCCAACCGTGGTTTAGGTTTGGAATTTGTGAAGAAGTTGGCGAGCA
GAGTTGATATTTTATTTGCTGGATGTCGTAAACCTTCTGAAGCTTAAgaa
ttGAATGAGCTTAAAAACTTTCACCACAATGTTCATATATTAGAGCTAGA
TGTCACTTGTGAGAAAAGTATCCAAGCTTGCATTGAAGAAGTCTCCAAAG
TTTGCGGTGAAGTCGGATTGAGTTGTTTGATCAACAATGCAGGAGCAATA
AAGAAGCCGGATAACAAAGTTACTGAACTATCATTGGATGATCTCAAACG
TATTTTTAGTGTTAACACCTTTGGCCCGTCAATAGTTTGTAAGCATGCAC
TCGTTATGCTCCAACAGGCAGCTATGAAAACATCTAGTGATTACATCATC
TCAAAGCCACTAATCATAAATATTGGAACCATTTTATCTTCGATTGGGAG
TGTGGAACGATTTGGACTCTCCCATTACAGCTACAAAATGTCAAAGAGTT
CATTGAatatgtttacaaaaatgttgTCTTTGGAGCTCAAACAGGATGAC
ATCGGTGTTATTTGCATCAACCCTGGTTGGGTTCAAACAGAGCTTGGAGG
TTGGAATGCCACTTTGACAGTTGAGCAGTCAGTTGATCAGATGTTAAAAA
CTTTATCAATTTTGAAGCCTGACCAAATGGGATCACTCATAGATATTGAT
GGAAGTATTATTCCTTATTGATATTCCCTTTGGAAAAGCTAATTCATATT
CCTGATATATTGTCAATCAAAATTGTCTTCAATTAACCTGAATCTagcaa
gaactaattttggcaatcagaaaaaatcctaaaaaagatttttcaaagat
tcagCAAGAGACTcattttgctgagtcagcaatttttttagttttaacaa
AACTATTTTTAGCGAATAGTTATATTTTTGTTGTCTCAGAACAAGTGTTT
TGTGGATTCGGGGCTGTTCCAGGAAGTGATAGAAAGTTTTGGCATGTAAC
TTTTTGTGGCAgagcagcaaattttcaaatcttttattaGTTTTGGTATC
ACAAACTAGAATAATAAAGCCCAAATAATTTTTATGCTTTCATTTATAAT
ACATACATCTTCATCAGATTTTTTTACCatacaatattttgaaatataag
aaTTTTTATAAACAATATGAATAATATTATGATGGTAGAgagttttgtat
atttttatgcaCACATTGTATAAATCTCACATATATAATTtggattttta
ttatttttaatgattttctctGATTCTCTTCAGTTTCTTTCTAGTTCTTC
ACTTTACCTGCATCTATTCTTCATTTATCATGTTTacagaaaaataagaa
aatatgtcacaaaaatttgcgaaaaaccTTCTTATAACAGGTGCCAACCG
TGGTATTGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTT
TATTTGCTGGATGTCGCAAACCTTCTGAAGCTAAGGAACTGAATGCTTTG
AAGGATGCGCACAACAACCTTCATGTAGTGGAAATAGATGTCACTTGCGA
AAAAAACATCCAAGCTTGCATTGAAGAAGTCTCTAAAGTTTGCGGTGAAG
CCGGATTGAGTTGTTTGATTAACAATGCAGGAGCTAACAAGAAGCCGGAT
AACAAAGTTACCGAACTATCATTGGATGACCTCAAACGTATTTTTAGTGT
CAACACTTTTGGTCCTCCCATAGTGTGTAAGCATTCCCTATCATTGCTTC
AACAAGCTGCCAAAACACATTCAGATCAAATCATCACAAAGCCTCTTATC
GTTAACATTGGGACTGGTTTATCGTCTGTCAGCAGAATGAATCGCGATAT
GAGTTGCTATTATTCCTATAATATGTCCAAGAGCCCTTTGAACATGTTTA
CCAAAATGTTATCGCTGGAAATCGAAGAAGACGGTATTGATGTCATTGCT
ATCCACCCTGGGTGGGTACAAACAGATATGGGCGGTTCAAATGCCACCCT
CACTGTTCAACAATCAATTGACATGATGTTAGAGACGTTATCCAATCTCA
GACAAGAACAAAATGGAACCTTAATCAATTTCAAAGGAGAAACAATCCCA
TATTGAGAGAGACTTGGTTAAATGGATTATTTTATTGGGATGAGAGGAGA
GAGACTCCAGAGACGAGAggtcaaaattgcaaaaaaatttgtatcTTATT
TAAAATAGAATGAAGTTTAGAGTGACTTCGTCTATTAGAGTAACAAGTGA
AATAATATCAAGCTGATCAGGGTAGAGACATGTAAGCTGTCAGTTAGGTA
AACCACTAGAACGTTCATTATAATAAATCTTCctaatatatttttaattt
gagATAAATTTTTGTATGATAATGTAAAGaagaatgtttttgaaagtttt
acgAGTTTTTATGGATTCTACCAACCGAAATTGTGTGAAAGAGcagattt
taatgattttaaggCGATTATTTTAACATGACCTAAAGATGATGGTTAAG
ATGACCTTTTGGTTCGATTCTCCATGTTTATAATGTTTGTATGTATTTTT
CAGGTAACagtaaaaatatcaaagaaataaaaacatcaatgaACATGACG
GCcaatgaattttcattttcttgtgATCCAAACTTCTGCAGTGTTTGTGG
TTCAATCCTCCCTCTCCCCGTCACTGGTTCAGATGTCCTCTCCTGCAAGT
TATGCTCAACTTCCATCAGTGTAGATTCTCTTGAAGGTATCGTCATCCAT
TCGTTCAAGAAGTTTAATCAACACAAACTCAAATCATCTGATGAGATGGA
ACGAATGAAAGAAATGGAAGAGAGTGCGACCAACCATGGACCTGTGGTCA
AACGAGAATGTTCGAAATGTCATCATAAGAAAATGACATATACGACGCGT
CAAACGAGGTCGGCCGATGAGGGCCAGACAGTCTTTTTCACATGCTTGAA
ATGCAATTTCACCGAGACCGAATATTCATAATGATTCTAATCGATATTTT
TCTGCTGGaaatttgataataattttaGCTGGAGAAGGTAACAGTTTCTT
GTACTTTTTGGAAATTGGTTGTACTTGCGTGAGTTATTGATATGCTGAAA
TTGTATCTTACATTGGTATTATTAGATCGATGGAAGACAAAATACTTAGT
TCCATTGTCATTGCATCATAGCTAGATGGTTATGCACTACGAATATCTTT
TTGGAACAAGATGTTTATAATTCAATGtcaattgattttaaaagcTCTTA
AGCTTCTTACATCTCATTCAAACACACTGATGATAACTGTATCATACAGC
TATATAATCTATTTCCGATTACGTAATTACAATGATTTTTCCTCACAGTT
TTTTATTCCGTATGATTATTTATGGTCTTTGGAAGAGATGATATCTACAC
ATTTGTAATATATATTTGAGCAACTCTTGTTATGACTTGTTGTATGTCGT
TAAGAAGGTCTTAGTTCTATACATTATTATCTATATATGCAAGATTTGAA
ATGAATTGGTATTCACAATATCTAAACATTTCCAATCATATATATTTAGT
CTTATACTTCTCTTTCAATACCAATTTGTTATGTCGTTGGAAAGGTCTTA
ATTCTATACATTA
Run BLAST on NCBI

transcript from alignment at sc0000052:755467..765606-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005373 ID=TCONS_00005373|Name=TCONS_00005373|organism=Clytia hemisphaerica|type=transcript|length=10140bp|location=Sequence derived from alignment at sc0000052:755467..765606- (Clytia hemisphaerica)
GAGAAATCAACACTAATGTCACAAAAATTTGTGAAAAACCTTCTTATAAC
AGGTGCCAACCGTGGTTTAGGTTTGGAATTTGTGAAGAAGTTGGCGAGCA
GAGTTGATATTTTATTTGCTGGATGTCGTAAACCTTCTGAAGCTTAAGTA
TACTCTTATATTGATTACATTTTTCTCCGAAGATATTTTTGAAGCAATTT
CTTTTTCCATGGTTCTCTACTTAGGATAGTTTGTAGAAGACAATTTGGTT
GGCAAACAATATTATCCTCTAGAGGATGCATGATCTCTCATTTTCGCTGC
TATTTTCTACTTTCCTGTCTTCTATTCTGATTTTCTGACTTTCTCAAGTG
TTCTTAACTGTTTTTACATATTTTTTCTAAAGTTCGCTTGAACCACCAAA
TGCAACCAAAGCAACCTTTGGTTTGCAAACCCAATGCCTAACCTCTTACG
TTACTGAGACACAGCAGAATACTGTCATTCATAAATACTGTCAACTGCTC
TAACTTGGGACGGTTGGTCGACTGGGACATGGGACTGTTTGATATCTGGC
CTGTATTTTTTCACTTACTATTAAATCTCTTTGACCACAAATTTGTTTTG
ATAATTCCACCAAGTTTATCAATCATACTTTCTGTCATACTGTAACATGT
CACAATATCTTCCACTACGGAATAACTTTCATATTTCGATTTAAAAGCCT
ACTCGCTGCGAAAGAGAAATTGTGTATTTTTTAATATGCCTTTCATTAAC
TCAAATCAAATGACTTTGGAGGTTTGGTGAAATGGTGGCCAAATTGTCGT
CCCATGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGACGGTACTTATA
GCGTTAAATTACATACCTTAATTGAAATAGCTCCCAACCCTACTTGTGCC
CCTACAAGGATCTCTACAGCACCCTAACTTAATTCAGAGTGTATGAGTGC
CCCTAAGAAGGCCTTTGGCCTTATATTGTGACTCACAAGCTCTAACCCTA
ACCCTAACTGATAATAACTGAACCCTGTCTAGGTACGCAGACTGAAAAAT
TCGACTTGCATCCTGGAGGATGATATTGTTTCCCAACCCAATCAAGCAGT
CATTCATTTAATAAAAGAAATCGTCAGCTTATATAAAAAATTTGACAAGA
GTATTTTATTTTTAGGAATTGAATGAGCTTAAAAACTTTCACCACAATGT
TCATATATTAGAGCTAGGTAAATTTCATCCACTCTTTTAATAAATATTCC
GTTTTCATGAAACTCTGAGTTTGAAACAAAGATATTGTGTCAACTCTTTA
TTATAATAACGCTCTATTTACTGATTGAGCACTCTACGAGGAGAAGATAT
ACACCCTCTACAGTTTTCATATTTGTTAAATATCTTATGGACTTGGCTAA
TTTTTATTTGGAAGATTTTTAACCAGGTCTGTCTTCATTGTCTATCTTTT
GTCAGATGTCACTTGTGAGAAAAGTATCCAAGCTTGCATTGAAGAAGTCT
CCAAAGTTTGCGGTGAAGTCGGATTGAGTTGTTTGATCAACAATGCAGGA
GCAATAAAGAAGCCGGATAACAAAGTTACTGAACTATCATTGGATGATCT
CAAACGTATTTTTAGTGTTAACACCTTTGGCCCGTCAATAGTTTGTAAGG
TAGAATAAATAGATCTTAGCAACACGTCCTTTAATTTGATATTAAATTTT
TCCTGGCACTTGTACCTCTAGATCAAAAATATGTGTCAAACATTATTAGT
TGATATATATGGTCTATTTGTATTTGTTCTTTTTTGTGCTGATTTATGCA
AATTATCTCCACTTGATTTCGTTTTCCTGACTTTCAATTAATTGATAGTC
TAAAGAAGTGTTTTCTTATAGCATGCACTCGTTATGCTCCAACAGGCAGC
TATGAAAACATCTAGTGATTACATCATCTCAAAGCCACTAATCATAAATA
TTGGAACCATTTTATCTTCGATTGGGAGTGTGGAACGATTTGGACTCTCC
CATTACAGCTACAAAATGTCAAAGGTACCCTACTGTGTTATTTCTTTAGC
TATAGGCTTAACCAACCTAGCTCTCTGCTTTTAAATTGTTCAAACTAGCA
TAGGAAAGATCTTTCTGCCAACAGCCTGGCCTCTTGTCTGGAGAAAAATG
ACATTGGAAACTATTCTATTTTAACTGTATTTGATTGCTTTTAGAGTTCA
TTGAATATGTTTACAAAAATGTTGTCTTTGGAGCTCAAACAGGATGACAT
CGGTGTTATTTGCATCAACCCTGGTTGGGTTCAAACAGAGCTTGGAGGTT
GGAATGCCACTTTGACAGTTGAGCAGTCAGTTGATCAGATGTTAAAAACT
TTATCAATTTTGAAGCCTGACCAAATGGGATCACTCATAGATATTGATGG
AAGTATTATTCCTTATTGATATTCCCTTTGGAAAAGCTAATTCATATTCC
TGATATATTGTCAATCAAAATTGTCTTCAATTAACCTGAATCTAGCAAGA
ACTAATTTTGGCAATCAGAAAAAATCCTAAAAAAGATTTTTCAAAGATTC
AGCAAGAGACTCATTTTGCTGAGTCAGCAATTTTTTTAGTTTTAACAAAA
CTATTTTTAGCGAATAGTTATATTTTTGTTGTCTCAGAACAAGTGTTTTG
TGGATTCGGGGCTGTTCCAGGAAGTGATAGAAAGTTTTGGCATGTAACTT
TTTGTGGCAGAGCAGCAAATTTTCAAATCTTTTATTAGTTTTGGTATCAC
AAACTAGAATAATAAAGCCCAAATAATTTTTATGCTTTCATTTATAATAC
ATACATCTTCATCAGATTTTTTTACCATACAATATTTTGAAATATAAGAA
TTTTTATAAACAATATGAATAATATTATGATGGTAGAGAGTTTTGTATAT
TTTTATGCACACATTGTATAAATCTCACATATATAATTTGGATTTTTATT
ATTTTTAATGATTTTCTCTGATTCTCTTCAGTTTCTTTCTAGTTCTTCAC
TTTACCTGCATCTATTCTTCATTTATCATGTTTACAGAAAAATAAGAAAA
TATGTCACAAAAATTTGCGAAAAACCTTCTTATAACAGGTGCCAACCGTG
GTATTGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTA
TTTGCTGGATGTCGCAAACCTTCTGAAGCTAAGGTATGAATTTATTTTTC
AGTGCAAGAAAAGATCTTTATACTCTATATACTAACAGCAACGGACTAGC
AGTACTTTCTCCTCATAGTTCGCCAACAATCGCTGTCTTACCTTTCAATA
CGCCTACATTACAGTATATTTCTTTAACTATCAACTGAGCTTTTCTGAGA
CAAAGCATTTAGATTGAGTCAACTCATCTTCAGTTTAAGACTTCAAAGAG
AACATTAGTTTTTTGTAGCCTGGAAAGAGAAAAGGTTAGTATGTAATTGG
AAGTGTCACTAATGTTGCATGCCTGTCTATGTAGAGGCTTTGTAGCTGTG
TATAAGGCTTTGAGGTTATAGCAAAATTTATAATGATTCTTATATTCCTA
ATTTGCATAGTTGATTCATTTTTCAGGAACTGAATGCTTTGAAGGATGTG
CACAACAACATCCATGTGGTGGAAATAGGTTGGTGAAATCTGAAAATTCA
GCCGGGAAAATCCGAATATCTGGGAGGGGAAAACAGTAAATTCAATTAGA
AAGAACTGAAAGCTCGGTTTGGATCTGAAAACTCAATTGGAAAACCCAAA
AACTCAATTGGAAAACCTGAAAACATGGTTTGTAATTATTTACAGTTTGA
CACACTCTTTTTGTTAAAGTATTTTCATACTTCTCTTACATCCACTCTGA
CCAGGTTATCTGAAAACCCAGCACTGCTGTTAACGAAATATAATAAATAC
CATTTGGTCAAAAAGGTACAACCTATCAAACAATTGCAACAATGTTTATT
TATTCAGACAATGTAGTGGCTGAACAATGGACTAACTGTCTTTCTTCTCC
GTTTCAGATGTCACATGCGAAAAAAACATCCAAGCTTGCATCGAAGAAGT
CTCCAAAGTTTGTNACCCTTCTTCTCCGTTTCAGATGTCACATGCGAAAA
AAACATCCAAGCTTGCATCGAAGAAGTCTCCAAAGTTTGTGGTGAAGCCG
GATTGAGTTGCTTGATCAACAATGCGGGAGCATTAATTAAACCTGATGAC
AAAGTCACTGAACTGACATTGGAAAAATTTAATCATATTTTTAGTGTTAA
TATCTTTGGCCCCTCAATAGTTTGTAAGGTAAAAGGTGTTTGGAAATCTC
TTTTCTGTTTAGTATTTTTGTCAATTCAGAGCTTTCCTTCTTATGACGAC
TAACAGTAAGAGAAAGTTTNGTTTAGTATTTTTGTTAATTCAGAGCTTTC
CTTCTTATGACGACTAACAGTAAGAGAAAGTTTCATTCGATTTTGAATCT
TTTTGGTAATTCAAAGAGAGCACCTGGCCTCCTGGACTGTAAAATTTACA
ATGATCAGATGAACTATGAAACTGTGGGAGTATCCGATCCTAATTCCAAC
TGAACTTTCTCCCATTTCAGCACTCGCTAAATTTACTCCAACAAGCTACC
AAAACACATTCAGATCAAATCATCACAAAGCCTTTAATCGTTAACATTGG
GTCAGACTTATCATCAGTCAGCATTATGGACCGCAATATGGGCTTCTACT
ATTCTTATAATATGTCCAAGGTATTGAGATAATTATATCACACTAACAAT
CAGTTCTCGACTCGCCTGTAGTTTAGCCATTTCTGGATACCGTTCTGTTG
AATGGGGTTGTATTAATTGATACGACATTACTGTATCACAAAAGAGAATA
TCAAGTTTAGGAAAGCTCTACCTTTTAAGGGAATGAATTAATCAATTAAT
GCGAATATGGTCTTTTTTCGCAAACGTAAATTTCGCAAAAACTTGAAAAT
TACGGTTGTTTGCATTAATAAGTTCCGCATTTTTTTTCTAAATTTTTCTG
ATTTATGAGGTGTAAACCCTAAATATCGTTTTCTGGGCTCCAGGGCATAA
ATAAAGCACTTGTATATTTGACATTATTCTGATACTCAATAAGTGCCTAA
ACCAGATGTTACCTTAAGAGAAGAAATTTTGGTGGGAAGGGGCCCATTTT
AGTGCAATTTGGCAGAATTTATTTTGGCGAATTGATTAAAATCTCTAAAT
TTGGCAAGGATTAATTTTGGCGAACGACACGTTATTTGTTAAAAATTTTT
AGCTGAGAATCGAGAAGGACAGGCGATTTTAGGGAAAATGGAGACTTAAG
TGAAAGAAATTTAATCTAATTTAATTTTGGAATTTTGGTGAATTTGGCAA
GATTTTTAAATTTCTTCCCTTAAAGGTAGAATGCAATAAAGAAAGACATA
AAGCAATAAAGAAAACAAGATTCTTAAAATCAATAGTTCCTCATTATTAT
AATCATACCAAATTATTTCATTGGAAATTTTTTTGGTTTGTTCTGCTTCT
TGAAAAGGAAAAAACCTTTTCAAACGCTATTTCACATAATTCCGTAAAAT
CTATAAAATGGGCCTATTCGCATTATAATTTTTTCTCCAAAACATAAAAC
TAATATTCCTGAGAAATCTTGCAGCGAAACAATGATAATGTAACCTTCAG
AAAGCTCCTTAACTTTTCTATGTTTTAAATTTGTCTAACTTTTTAGAGCT
CTTTGAACATGTTTACCAAAATGTTATCGCTGGAGATCGAACAAGACGGT
ATTGATGTCATTGCTATCCACCCTGGGTGGGTACAAACAGATATGGGCGG
TGCAAATGGCACCCTCACTGTTCAGCAATCAATTGCCATGATGTTAGATA
CGTTATCCAACCTCAGACAAGATCAAAATGGAACCTTAATCAATTTCAAA
GGAGAAAACATCCCATATTGAGAGAGACTTGAACATNGATTGACATGATG
TTAGAGACGTTATCCACCCTCAGACAAGATCAAAATGGAACCTTGATCGA
TTTCAAAGGAGAAACCATCCCATATTGAGTTAGAATCAAACCACTCGAAC
ATGCATTAGAAATCTATTAAATAGATATTAATATTATTTTTAATTTAGAA
TAAATTATTTTTACAGGTTACAGAAAAATAAAAAAATATGTCACAAAAAT
TTGCGAAAAGCCTTCTTATAACAGGTGCCAATCGTGGTATTGGTTTGGAA
TTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATTTGCTGGTTGTCG
CAAACCTTCTGAAGCTAAGGTATGAATTTATTTCAAAGCAAAAGAAAAGT
TAGTGCAAGAGAGAGCTATTGTAAAAGATGTAAATACTTCTCATTGTAGC
TCCAATCACAATCAGCGCATGCCAATAATAACATACTGTACTTCAGGTGT
ATTGAAAGATTGTAAATATCAGACAGGGATTGTTGGCGAACTATGAGGGA
AAAGTACTGTTTGTCCGCTGCTGCTGTACAGGCTGTGTATAGGCTTTGAT
GTTAAGCAAAGTTTATTATGATTCTTCTGATTTTGTATTGTTGATTAATT
TCAGGAACTGAATGCTTTGAAGGATGCGCACAACAACCTTCATGTAGTGG
AAATAGGTTGGTGAAATCTCGAAGGTCAGCCGGGAAAACTATCCAGGTGG
GAAAATCCGAATGGCCGAGTGGGGAAAACATTAATTTCGATTAGTCAATT
TGTAACTGGGGAGGGAAAACAGTAAACTCGATTAGTCAATTTGTAACTGG
GAAGGGTAAACTCAGCTTGAAAATATAACATACGTTATTGTATATATGCC
TCAAAAAAGATTGAAATATCTCTTTCGTAGATGGGATTGATGCCAGCAGG
TGCCAATACTATACAATTTCAAACTAGTCCTGTACTATCCTGTAGCACAA
TTTAGTTCTATAGCCATTCGTGAAAATGAACCACCACGGTTTCTTTATCT
ACCATTCACGCTGAATCTGTTGGTAGCATCGGATATTTGATTTCCAGACC
TCGAAAAAAACCGTTAGTAAAGGGTCCCCTTGATAAGTTCAATCGATTCA
CTAAAAATCGATTTACTCGAAAACTGCAGGAGATTCAAAGGGCATTTTCT
TTTTGTCAATTCTACACCCTATTAGAAGCATAATATCAAAAATTGACTAA
CTGATCTAAGGGGTGGCCTACGAAGTGACACAATTCACTACCTCGGCCGA
TAGTCTAGTGTTCTGGATCAACTGCTTGACCCCCCCCCCTGACATTTTGA
TACATACTTTCAAAATGTTTATTCAATCAAATAATGTAACGCCAGAACAG
TGGGCTGGGGACTAACAACACTTTATTTTTTTCCATTCATTTCAGATGTC
ACTTGCGAAAAAAACATCCAAGCTTGCATTGAAGAAGTCTCTAAAGTTTG
CGGTGAAGCCGGATTGAGTTGTTTGATTAACAATGCAGGAGCTAACAAGA
AGCCGGATAACAAAGTTACCGAACTATCATTGGATGACCTCAAACGTATT
TTTAGTGTCAACACTTTTGGTCCTCCCATAGTGTGTAAGGTAAAAAAGAT
GTTTGCGATTCTCCAAGGTTTCTTGTCTCGCCCTCTAATTTGAGCCTCTA
TGATTCCTCTATTTGTTACTCAAACTAACACATTTTTTTCTGCTCAGCTT
GGAAAGTCATACTAAACGATTCCCTATAATTGTTTTATATTTAATTCCTT
TAAAAATGTCGAATTACAGAGAGAGTTAATAGCGAGATTATGTATCGGAG
ATATTCTACGGCTACGGTTGCGGGGCTGCCCATGCGGGTCGTCACCAAAG
GCGACATGTCGTTGTCTACTTTGCTCTGTACGGGAAATACACCAAAACAC
CGTATAAGCAAAGTCGACATAATGCCGTACGTCAAATATCGGACTTGCTT
TCACCCGCCATTACTTGCCTTACTCGCCATTTCCCTCGCCCTTCAGCCGT
AGCCGTAGAGAATTCCAGATACATAATCTCGCTAATGAAAGCTGTGTACA
CGAGCTTCATCGCCTGAGCTTCCTCTCTAATCTTGATTTACTTCATGGAC
CTTTCAGCATTCCCTATCATTGCTTCAACAAGCTGCCAAAACACATTCAG
ATCAAATCATCACAAAGCCTCTTATCGTTAACATTGGGACTGGTTTATCG
TCTGTCAGCAGAATGAATCGCGATATGAGTTGCTATTATTCCTATAATAT
GTCCAAGGTAAAGATTTCTTGTTACATTAGCAATTATTTCTCGACTTGCC
TATAGTTGTGCCATTGTTATAGTTTGAAAGAGTTTAAAAGAATGTCTAAG
CTTTCTTTAAAATTTCAGAAAAATCTTGTAGCGTAACAATAAAAATGGAG
TCTTTGGAAAATCTAACTTGACGATCTTCTGTTTGTTATTTGTCTCTTGA
CTTTTTAGAGCCCTTTGAACATGTTTACCAAAATGTTATCGCTGGAAATC
GAAGAAGACGGTATTGATGTCATTGCTATCCACCCTGGGTGGGTACAAAC
AGATATGGGCGGTTCAAATGCCACCCTCACTGTTCAACAATCAATTGACA
TGATGTTAGAGACGTTATCCAATCTCAGACAAGAACAAAATGGAACCTTA
ATCAATTTCAAAGGAGAAACAATCCCATATTGAGAGAGACTTGGTTAAAT
GGATTATTTTATTGGGATGAGAGGAGAGAGACTCCAGAGACGAGAGGTCA
AAATTGCAAAAAAATTTGTATCTTATTTAAAATAGAATGAAGTTTAGAGT
GACTTCGTCTATTAGAGTAACAAGTGAAATAATATCAAGCTGATCAGGGT
AGAGACATGTAAGCTGTCAGTTAGGTAAACCACTAGAACGTTCATTATAA
TAAATCTTCCTAATATATTTTTAATTTGAGATAAATTTTTGTATGATAAT
GTAAAGAAGAATGTTTTTGAAAGTTTTACGAGTTTTTATGGATTCTACCA
ACCGAAATTGTGTGAAAGAGCAGATTTTAATGATTTTAAGGCGATTATTT
TAACATGACCTAAAGATGATGGTTAAGATGACCTTTTGGTTCGATTCTCC
ATGTTTATAATGTTTGTATGTATTTTTCAGGTAACAGTAAAAATATCAAA
GAAATAAAAACATCAATGAACATGACGGCCAATGAATTTTCATTTTCTTG
TGATCCAAACTTCTGCAGTGTTTGTGGTTCAATCCTCCCTCTCCCCGTCA
CTGGTTCAGATGTCCTCTCCTGCAAGTTATGCTCAACTTCCATCAGTGTA
GATTCTCTTGAAGGTATCGTCATCCATTCGTTCAAGAAGTTTAATCAACA
CAAACTCAAATCATCTGATGAGATGGAACGAATGAAAGAAATGGAAGAGA
GTGCGACCAACCATGGACCTGTGGTCAAACGAGAATGTTCGAAATGTCAT
CATAAGAAAATGACATATACGACGCGTCAAACGAGGTCGGCCGATGAGGG
CCAGACAGTCTTTTTCACATGCTTGAAATGCAATTTCACCGAGACCGAAT
ATTCATAATGATTCTAATCGATATTTTTCTGCTGGAAATTTGATAATAAT
TTTAGCTGGAGAAGGTAACAGTTTCTTGTACTTTTTGGAAATTGGTTGTA
CTTGCGTGAGTTATTGATATGCTGAAATTGTATCTTACATTGGTATTATT
AGATCGATGGAAGACAAAATACTTAGTTCCATTGTCATTGCATCATAGCT
AGATGGTTATGCACTACGAATATCTTTTTGGAACAAGATGTTTATAATTC
AATGTCAATTGATTTTAAAAGCTCTTAAGCTTCTTACATCTCATTCAAAC
ACACTGATGATAACTGTATCATACAGCTATATAATCTATTTCCGATTACG
TAATTACAATGATTTTTCCTCACAGTTTTTTATTCCGTATGATTATTTAT
GGTCTTTGGAAGAGATGATATCTACACATTTGTAATATATATTTGAGCAA
CTCTTGTTATGACTTGTTGTATGTCGTTAAGAAGGTCTTAGTTCTATACA
TTATTATCTATATATGCAAGATTTGAAATGAATTGGTATTCACAATATCT
AAACATTTCCAATCATATATATTTAGTCTTATACTTCTCTTTCAATACCA
ATTTGTTATGTCGTTGGAAAGGTCTTAATTCTATACATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003049XLOC_003049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005373-exon-sc0000052-1575043694:765460..765606TCONS_00005373-exon-sc0000052-1575043694:765460..765606Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:764390..764441TCONS_00005373-exon-sc0000052-1575043694:764390..764441Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:763958..764151TCONS_00005373-exon-sc0000052-1575043694:763958..764151Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:763583..763735TCONS_00005373-exon-sc0000052-1575043694:763583..763735Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:762424..763412TCONS_00005373-exon-sc0000052-1575043694:762424..763412Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:759001..759052TCONS_00005373-exon-sc0000052-1575043694:759001..759052Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:758068..758261TCONS_00005373-exon-sc0000052-1575043694:758068..758261Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:757400..757549TCONS_00005373-exon-sc0000052-1575043694:757400..757549Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1575043694:755467..757198TCONS_00005373-exon-sc0000052-1575043694:755467..757198Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:765460..765606TCONS_00005373-exon-sc0000052-1510915933:765460..765606Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:764390..764441TCONS_00005373-exon-sc0000052-1510915933:764390..764441Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:763958..764151TCONS_00005373-exon-sc0000052-1510915933:763958..764151Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:763583..763735TCONS_00005373-exon-sc0000052-1510915933:763583..763735Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:762424..763412TCONS_00005373-exon-sc0000052-1510915933:762424..763412Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:759001..759052TCONS_00005373-exon-sc0000052-1510915933:759001..759052Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:758068..758261TCONS_00005373-exon-sc0000052-1510915933:758068..758261Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:757400..757549TCONS_00005373-exon-sc0000052-1510915933:757400..757549Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1510915933:755467..757198TCONS_00005373-exon-sc0000052-1510915933:755467..757198Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:765460..765606TCONS_00005373-exon-sc0000052-1491911889:765460..765606Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:764390..764441TCONS_00005373-exon-sc0000052-1491911889:764390..764441Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:763958..764151TCONS_00005373-exon-sc0000052-1491911889:763958..764151Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:763583..763735TCONS_00005373-exon-sc0000052-1491911889:763583..763735Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:762424..763412TCONS_00005373-exon-sc0000052-1491911889:762424..763412Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:759001..759052TCONS_00005373-exon-sc0000052-1491911889:759001..759052Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:758068..758261TCONS_00005373-exon-sc0000052-1491911889:758068..758261Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:757400..757549TCONS_00005373-exon-sc0000052-1491911889:757400..757549Clytia hemisphaericaexon
TCONS_00005373-exon-sc0000052-1491911889:755467..757198TCONS_00005373-exon-sc0000052-1491911889:755467..757198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:755467..765606 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.60348	9.2201	0.897616	0.342156	4.90232	3.38009	8.95662	9.75372	3.21356	4.4567	5.03619	3.29643	3.37262	3.57553	6.6327	5.67269	5.7196	4.92311	1.74902	2.47018	5.67964	2.96986	7.00768	5.88815	2.26466	5.05873	5.28255	1.69231	8.06527	6.25091
Blast
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BLAST of TCONS_00005373 vs. Swiss-Prot (Human)
Match: RPA12 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.321e-25
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 2 
Query: 2639 MNMTANEFSFSCDPNFCSVCGSILPLPVTGSDVLSCKLCSTSISVDSLEGIVIHSFKKFNQHKLKSSDEMERMKEMEESATNHGPVVKRECSKCHHKKMTYTTRQTRSADEGQTVFFTCLKCNFTETEYS 3028
            M++     SF  D +FCS CGS+LPLP    D ++C  C  +I+V   EG V+ +   F  H+L ++  M     +EE     GPVV R C +C H+ M Y TRQ RSADEGQTVF+TC  C F E E S
Sbjct:    4 MDLANTCSSFQSDLDFCSDCGSVLPLP-GAQDTVTCIRCGFNINVRDFEGKVVKTSVVF--HQLGTAMPMS----VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126
The following BLAST results are available for this feature:
BLAST of TCONS_00005373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPA124.321e-2544.62DNA-directed RNA polymerase I subunit RPA12 OS=Hom... [more]
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