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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005349 ID=TCONS_00005349|Name=TCONS_00005349|organism=Clytia hemisphaerica|type=transcript|length=2035bp
TTGCTGAGGATATAATctaaagaaagtcaaaaaatgttaGTAATTCAACC
ATTTTTTCTCACCGCATTAATGGAACAAATCTTATATATAACATTTCTTG
GAAatggacattgtgacttttgaccccccgggCAACAGGTCTAACCAATT
ATCtcttttcactacccccggacaagctcTCTTCACGACCTTCCGAAATC
CGCTTTTATTATAAAACATTCAATTGTTATATACCTCTTTAATACTTTTG
CATATAATCTTTTTTATACATGCTTAGCACCTTGTGCTTTactaattctt
ctttttttaaggCATATACTCTTCTTTTTAGGCATAAATCCCTTAACCCT
CAGTAAGCTGAATGCAGGAACTAAGATGTTTAAACAAAATCCACAATGGG
CAAAGGTAGTCTAAATAGATTACGACGCCCCTCAAAACAACATCACACAT
CATCATCTACCCCCGGACacaatatcctccaccccctcccCCATGTACGG
TCATTTTCTGAAAGagcccaattcaaatctttctctaatttgtaAAGCTC
AATACAATACTCCTAACAATTTCATTATAATGAAGCATAATGCAAAtcga
ttattattttttatatatatttgtAACGAATCTTGCTGGGTACATTTAAT
TTGTACCCGAgataattttttacattcaaactTGTCATAATTATTTATTA
CTTTATTATAGCATGTGTGTTGTTTTTGGAAGCGAGTTGCTTATGTTATA
AATCACTTAAATTCTATCCCGAAGTTTCGAAGGCGTTTATTCTATTATGT
CATTTTGGGCGTTTCTTTTTCGTTGAAACTCTTTAATTTATTATTCTGTT
TTTGTGTAGTATATTTACATTTCACCTTgttaggctggacttaaaaaatt
gttggtttgccgtcacccgaccgaccttacctcgaaacctgccgaccgac
ccaaaaaattttattgccattttaaagaagatttttttccttcaaaaact
tcaaacaataaaaaatcaaaactcgtatcttgtttgtcttAAGCgaaaga
atcgtaaattccctgctagcacttctgttttttattaaacaaactgttaa
cccttccatggacgaaaatttcataaatcgccaaaataaaaaaaattccg
accgaccgacccacctccaaaatctagggtcgggtgacggcaaaccaaca
attttttaaatccagCCTTATTCTTTTGATCTCTTAACCATTTTTGACAG
CTCTTTTAATAGTCTGTAGTTATATCATGTTTTTGTTCAGTAATTCTTAA
ACACAGGCTCATTTTGTTCTACactaaattatcttttcaacaatgTTTGA
TTAATTACAATAACGATTAATACGATAACGTTCTAGTTAATACACTCTGG
TAAAGATCGTCATTGTAGAATCTTGAAAAGATTTTGCAAGATTCCAACCT
ATTCTTACATATTCTTACCTATCCTTACCTATTCTTACTGTGTTTTCTAA
GAGTAATAAGAATCTTTGTTCACTAAAGTTTTTTTGTAGATTTGGAGAAA
ATCTTGATAAACCTAGGCTCATtcaattaaaaatatcaatttataCGTTT
TGAGCTAACAAAATTTGATATATATGCCTTTTAGTGTGTAATATTTCact
atttcaaattttagcaatttatttttttaaatttcaaaatgtgtttgtat
attttttgattcttttcGACACAAataattattaattttttacacctttt
tagaaaaattcaagtgttaatttttttattttgttcgtttttgtgaattt
ttgtcTCATTTTTGTCGCTGTTATTATTATACATTGTTAAtttgtattat
ttttgtttgttcgtttgtggttatttttttgtttatattatgTTTAGGTG
TTTGGGAAAATGACTCATCTACTATGATCACGGTTTTagttaaaaatact
tttttaagcTCTAATTTGTTTTTGAGAATTTCCCGTCTTGCTGATGTTAC
TCAGaaaattttcggcaaaattttcCCTATATTAT Run BLAST on NCBI transcript from alignment at sc0000052:515779..517813- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005349 ID=TCONS_00005349|Name=TCONS_00005349|organism=Clytia hemisphaerica|type=transcript|length=2035bp|location=Sequence derived from alignment at sc0000052:515779..517813- (Clytia hemisphaerica)
TTGCTGAGGATATAATCTAAAGAAAGTCAAAAAATGTTAGTAATTCAACC
ATTTTTTCTCACCGCATTAATGGAACAAATCTTATATATAACATTTCTTG
GAAATGGACATTGTGACTTTTGACCCCCCGGGCAACAGGTCTAACCAATT
ATCTCTTTTCACTACCCCCGGACAAGCTCTCTTCACGACCTTCCGAAATC
CGCTTTTATTATAAAACATTCAATTGTTATATACCTCTTTAATACTTTTG
CATATAATCTTTTTTATACATGCTTAGCACCTTGTGCTTTACTAATTCTT
CTTTTTTTAAGGCATATACTCTTCTTTTTAGGCATAAATCCCTTAACCCT
CAGTAAGCTGAATGCAGGAACTAAGATGTTTAAACAAAATCCACAATGGG
CAAAGGTAGTCTAAATAGATTACGACGCCCCTCAAAACAACATCACACAT
CATCATCTACCCCCGGACACAATATCCTCCACCCCCTCCCCCATGTACGG
TCATTTTCTGAAAGAGCCCAATTCAAATCTTTCTCTAATTTGTAAAGCTC
AATACAATACTCCTAACAATTTCATTATAATGAAGCATAATGCAAATCGA
TTATTATTTTTTATATATATTTGTAACGAATCTTGCTGGGTACATTTAAT
TTGTACCCGAGATAATTTTTTACATTCAAACTTGTCATAATTATTTATTA
CTTTATTATAGCATGTGTGTTGTTTTTGGAAGCGAGTTGCTTATGTTATA
AATCACTTAAATTCTATCCCGAAGTTTCGAAGGCGTTTATTCTATTATGT
CATTTTGGGCGTTTCTTTTTCGTTGAAACTCTTTAATTTATTATTCTGTT
TTTGTGTAGTATATTTACATTTCACCTTGTTAGGCTGGACTTAAAAAATT
GTTGGTTTGCCGTCACCCGACCGACCTTACCTCGAAACCTGCCGACCGAC
CCAAAAAATTTTATTGCCATTTTAAAGAAGATTTTTTTCCTTCAAAAACT
TCAAACAATAAAAAATCAAAACTCGTATCTTGTTTGTCTTAAGCGAAAGA
ATCGTAAATTCCCTGCTAGCACTTCTGTTTTTTATTAAACAAACTGTTAA
CCCTTCCATGGACGAAAATTTCATAAATCGCCAAAATAAAAAAAATTCCG
ACCGACCGACCCACCTCCAAAATCTAGGGTCGGGTGACGGCAAACCAACA
ATTTTTTAAATCCAGCCTTATTCTTTTGATCTCTTAACCATTTTTGACAG
CTCTTTTAATAGTCTGTAGTTATATCATGTTTTTGTTCAGTAATTCTTAA
ACACAGGCTCATTTTGTTCTACACTAAATTATCTTTTCAACAATGTTTGA
TTAATTACAATAACGATTAATACGATAACGTTCTAGTTAATACACTCTGG
TAAAGATCGTCATTGTAGAATCTTGAAAAGATTTTGCAAGATTCCAACCT
ATTCTTACATATTCTTACCTATCCTTACCTATTCTTACTGTGTTTTCTAA
GAGTAATAAGAATCTTTGTTCACTAAAGTTTTTTTGTAGATTTGGAGAAA
ATCTTGATAAACCTAGGCTCATTCAATTAAAAATATCAATTTATACGTTT
TGAGCTAACAAAATTTGATATATATGCCTTTTAGTGTGTAATATTTCACT
ATTTCAAATTTTAGCAATTTATTTTTTTAAATTTCAAAATGTGTTTGTAT
ATTTTTTGATTCTTTTCGACACAAATAATTATTAATTTTTTACACCTTTT
TAGAAAAATTCAAGTGTTAATTTTTTTATTTTGTTCGTTTTTGTGAATTT
TTGTCTCATTTTTGTCGCTGTTATTATTATACATTGTTAATTTGTATTAT
TTTTGTTTGTTCGTTTGTGGTTATTTTTTTGTTTATATTATGTTTAGGTG
TTTGGGAAAATGACTCATCTACTATGATCACGGTTTTAGTTAAAAATACT
TTTTTAAGCTCTAATTTGTTTTTGAGAATTTCCCGTCTTGCTGATGTTAC
TCAGAAAATTTTCGGCAAAATTTTCCCTATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005349-exon-sc0000052-1575043694:515779..517813 | TCONS_00005349-exon-sc0000052-1575043694:515779..517813 | Clytia hemisphaerica | exon |
| TCONS_00005349-exon-sc0000052-1510915933:515779..517813 | TCONS_00005349-exon-sc0000052-1510915933:515779..517813 | Clytia hemisphaerica | exon |
| TCONS_00005349-exon-sc0000052-1491911889:515779..517813 | TCONS_00005349-exon-sc0000052-1491911889:515779..517813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:515779..517813 - |
Blast
The following BLAST results are available for this feature:
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