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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005316 ID=TCONS_00005316|Name=TCONS_00005316|organism=Clytia hemisphaerica|type=transcript|length=1349bpRun BLAST on NCBI protein sequence of TCONS_00005316-protein >TCONS_00005316-protein ID=TCONS_00005316-protein|Name=TCONS_00005316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp MKTAAIIVILVALNVATATHKSGCRDLSSTCSKYSKTNCRSSKFNKYCKKRun BLAST on NCBI transcript from alignment at sc0000052:92114..101299- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005316 ID=TCONS_00005316|Name=TCONS_00005316|organism=Clytia hemisphaerica|type=transcript|length=9186bp|location=Sequence derived from alignment at sc0000052:92114..101299- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:92114..101299- >TCONS_00005316 ID=TCONS_00005316|Name=TCONS_00005316|organism=Clytia hemisphaerica|type=CDS|length=11691bp|location=Sequence derived from alignment at sc0000052:92114..101299- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005316 vs. Swiss-Prot (Human)
Match: OVCH1 (Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 1.077e-35 Identity = 78/199 (39.20%), Postives = 113/199 (56.78%), Query Frame = 2
Query: 767 RIIGGKDAKPHSWPWQVGIYRNGKYGCGGTLINSRWIVTAAHCVYRR--PVRIFTAKLGDHNRDIVEG-EQSIQVSNYIVNENYQNTRLNNDLALVQLEKPVIFGRTVQPIYLPEQGERTDVGKKCYVTGWGKTSNPGMVNNILQQLAMTVQNKTRCSTMNSKYAP--LTGQMLCAANTEVVENQSVCHGDSGSPFVCQ 1348
RI GG++A PH WPWQVG+ G Y CGG +IN WI+TAAHCV + P+ +T GDH+R++ E EQ + + IV+E++ ++D+AL+QL P+ + V+P+ LP E + C VTGWG S G + + LQQ+ + V + C P +T +M+CA E + C GDSG P VC+
Sbjct: 574 RIAGGEEACPHCWPWQVGLRFLGDYQCGGAIINPVWILTAAHCVQLKNNPLS-WTIIAGDHDRNLKESTEQVRRAKHIIVHEDFNTLSYDSDIALIQLSSPLEYNSVVRPVCLPHSAEPLFSSEICAVTGWGSISADGGLASRLQQIQVHVLEREVCEHTYYSAHPGGITEKMICAGFAASGE-KDFCQGDSGGPLVCR 770 HSP 2 Score: 107.842 bits (268), Expect = 7.776e-25 Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 2
Query: 764 SRIIGGKDAKPHSWPWQVGIYRNGKYGCGGTLINSRWIVTAAHCV---YRRPVRIFTAKLGDHN---RDIVEGEQSIQVSNYIVNENYQNTR--LNNDLALVQLEKPVIFGRTVQPIYLPEQGERTDVGKKCYVTGWGKTSNPGMVNNILQQLAMTVQNKTRCSTM--NSKYAPLTGQMLCAANTEVVENQSVCHGDSGSPFVCQ 1348
SRI +++ PWQV + + + CGG+LI +VTAAHC+ + ++ T G+++ +D + EQ+I VS I + Y N+R ++ D+AL+ L+ V FG VQPI LP+ ++ + G C +GWGK S +N+LQ++ + + + C+T+ + PL MLCA + C GDSG P VC+
Sbjct: 45 SRISSWRNSTVTGHPWQVSLKSDEHHFCGGSLIQEDRVVTAAHCLDSLSEKQLKNITVTSGEYSLFQKD--KQEQNIPVSKIITHPEY-NSREYMSPDIALLYLKHKVKFGNAVQPICLPDSDDKVEPGILCLSSGWGKISKTSEYSNVLQEMELPIMDDRACNTVLKSMNLPPLGRTMLCAGFPD--WGMDACQGDSGGPLVCR 244 The following BLAST results are available for this feature:
BLAST of TCONS_00005316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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