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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005314 ID=TCONS_00005314|Name=TCONS_00005314|organism=Clytia hemisphaerica|type=transcript|length=2272bpRun BLAST on NCBI protein sequence of TCONS_00005314-protein >TCONS_00005314-protein ID=TCONS_00005314-protein|Name=TCONS_00005314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MAESAKPMGREESVPDLKTYVAQKKDVKCVVLLGASGDLAKKKIYPTLWERun BLAST on NCBI transcript from alignment at sc0000052:46223..55288- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005314 ID=TCONS_00005314|Name=TCONS_00005314|organism=Clytia hemisphaerica|type=transcript|length=9066bp|location=Sequence derived from alignment at sc0000052:46223..55288- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:46223..55288- >TCONS_00005314 ID=TCONS_00005314|Name=TCONS_00005314|organism=Clytia hemisphaerica|type=CDS|length=20007bp|location=Sequence derived from alignment at sc0000052:46223..55288- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005314 vs. Swiss-Prot (Human)
Match: G6PD (Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD PE=1 SV=4) HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0 Identity = 309/487 (63.45%), Postives = 389/487 (79.88%), Query Frame = 2
Query: 134 QKKDVKCVVLLGASGDLAKKKIYPTLWELFKHDWLPAHTFFVGYARSKITVDEIRRRCEQYLKVSEAQKEKLEEFWKVNSYVAGGYDDPEGYKALNDHIRMKETTAKSDRIFYLALPPSVFIPVTQKLHDHCESQTGWTRIVIEKPFGKDSASSAVLSDHLSSIFKENQIYRIDHYLGKEMVQNLMVLRFANRLFTPLFNRDNIASVTITFKENIGTYGRGGYYDEFGVIRDIMQNHITQVLCLTAMEKPASKDADDIRNEKLKVLKCIKPLTMDDIVLGQYSGNPDGKGDEKFGYSDDATVPKGSKTPTFACAVVNIQNERWDGVPFILKCGKALNEKKGEIRIQFRDVPGDIFDGETVRNELVIRVQPKEAVYFKMMTKKPGMFINPLETELDLSYSARYKDVHMPDAYDRLLLDVFYGSQLNFVRSDELAEAWRIFTPILHEYE-SKPEHQPIKYKFGSRGPKEADELARKHGFIYSGTYKWEN 1591
+ D +++GASGDLAKKKIYPT+W LF+ LP +TF VGYARS++TV +IR++ E + K + +K KLE+F+ NSYVAG YDD Y+ LN H+ ++++R+FYLALPP+V+ VT+ +H+ C SQ GW RI++EKPFG+D SS LS+H+SS+F+E+QIYRIDHYLGKEMVQNLMVLRFANR+F P++NRDNIA V +TFKE GT GRGGY+DEFG+IRD+MQNH+ Q+LCL AMEKPAS ++DD+R+EK+KVLKCI + +++VLGQY GNPDG+G+ GY DD TVP+GS T TFA V+ ++NERWDGVPFIL+CGKALNE+K E+R+QF DV GDIF + RNELVIRVQP EAVY KMMTKKPGMF NP E+ELDL+Y RYK+V +PDAY+RL+LDVF GSQ++FVRSDEL EAWRIFTP+LH+ E KP +PI Y +GSRGP EADEL ++ GF Y GTYKW N
Sbjct: 27 HQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKP--KPIPYIYGSRGPTEADELMKRVGFQYEGTYKWVN 511 The following BLAST results are available for this feature:
BLAST of TCONS_00005314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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