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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005312 ID=TCONS_00005312|Name=TCONS_00005312|organism=Clytia hemisphaerica|type=transcript|length=2897bp
TGAGCATCAAGAGAAAGCAGTAAAAAAAGGTTTCGGCATCTGTTGTAGTT
TTGAAGCCTAGGGAGCACTGATTCAAATTCGAGGTCTTGCGTTTCAAGGT
TTTTGGCGTTTCACGCGTTTTCGTTCAGTCTAGACCCACTGGATATGTTA
GAAGATGGAAGAAGGGCTGACACATGCAAGTTTGAGAAATAACATTGGAC
GAGCAGGTGACGGTGAATCTACTTTTGACGATGAAGAATTCTGGGAAAGT
GTCCCCGTTTTCCCCGATCGTGAGAAAGAAGCCCGATCTGTAATCCGAGA
AAAATTGAACGAACGGAAACAAGCTTTTAAGAGTGAGTATGAGGAGAGGA
ATAAATTGGAACGTGCGCAACGAGCGGAGGAGGAAATCGATGTCTCATTG
CACGCGCGCAAACAAGCGTTCTTCGACGACGCCAGTGATCGGGAAACGGT
GATCAAAACTTCTACCGCACTATCTGTACATTTAGATGAAACATCTTTGA
ACGATCGAAAACAAGCGTTTCTGGATGACGCAGCGGAGAGAAATAATAGA
CGAGGCTCTAGTCTATCGGATGATATCACCGAAGGCTCGCTTCACGAACG
GAAAAAAGCGTTTTTCGATGACGCAAAAAATCGAGAGAAAGTCGATAAAA
CTTCGACAGCTTTGAGTGAACATTTAGAGGAGACAACTTTGCATGATCGG
AAACAGGCGTTTCTACAGGACGCGGACGAACGGGGAAGATTTCAACGTAC
AGAAGCGTCCGAAATTCAAGAATCCTTATTATCGGACAGGAAGAAAGCAT
TTTTTCAAGATGCAAGCGAAAGAGAGAAATTTAGCAAAACTGAGGCATCT
GAGATTCAAGGTTCGATACATTCGGAACGTACGAAGGCGTTTTTCGATGA
GGCCTCACAGAGAGAGAAATTCAGGCGGACTGATACACAAGAGGGCGTTG
ATATGGGCGTGATTGCCAATCGACGCGCAAGTTTTCGTAAAAAGGATGCT
GAAATTCAAGCAGAGAAAGCGGTAGATGTGCGGGAAAATGTGAGCAAGAC
ACAACATCGAGCTCGAATGATTAAAGATGAGAATCAATTGTTTAAAGTTT
TGAATCGAAGGCGCGCCAAACTGGAAGTTGAGGAGGAAATAAAAGAACAA
TTCCCAGAGGAAGGGAGTGTGAATTCACAAGAAGATTCTGTTGATGGGAA
CAACAATTCTGTTGAGGAATCAACGAGTGAGAAGATTCTGGATGAAAGTA
AAAGCGAGTACGGATGGAAAGTGTGAAGAGATCGTTTGAGAAAGATGCTG
ATTCACCTTGTATGAATCTTGAAATTTCGTTGTCGAGGGGAAGGAGGAGT
CGTATTCGAAGGGTAGAGCATAATTCGGCAAAACAGATGCACGTAAAGAA
AATCGAGAAGTCTTCCCATAATGAAACATTGATGGAGAGAGATTGATGAT
ACGAAAGCGTAATGTATTTACTCGGTGTCTAGCGGAGTAAATGTTCTTGG
AAAGTGTAAAATTGTGATATTTTGTATAAACATTTTCGAACAAGTTTTGT
ATCCTAGGTGAATGAATATtgtcaaaaatgaagaaacaaataaaaataat
tcaccGATAATTCACTACCTCTATCTTATTCAATACCAAATTCGAAAAta
acataccttatcggggaaaacttcgtccgggaaaagtgacgaaattttgg
acatgtgacgaatattttccccggccttaatgcatttaccaactaccagc
cagtgacgaatttttccccgtcgaaaatttttcccgacgaagttttcccc
gttAAGGTAATAAAAGTCTATACTAGAATACTAATTTTATAAAATATGCA
GTAAAAGTCTTTAAAATACATTGAAATAGTTATAAattaaagaaagtttg
agttttAAAAACTCACATAATCTACATAATCTATAAGCACTGGGCTATCT
ACTCCAAAAATGTGTGGGTACAAATTCATTTAAATGTATTCCAGTGGGCT
GGAGACTTAACACAACAAATTACACATAATCTTGAAACTTTTgtgaattt
tgcaaaatttttagatGGAAAAGCCTCTTTATACTTCGCCGAGAGGGAAG
AACTTTAATCATTGGtatttaataaaattcaaaaacataaaAGCTTCCAT
TTTGTTCTCCGAAATGATTCATAAATGATTTAGGAATAAagcaaaatttg
ttttcaagtATTTCTGATTTATACCTCGTTCGCATTGTCAACTTTAACAT
ACTTTgtgtttttattcatttttacaaaatttgtcAATGTATCAAAATCT
tactattttaaagattttcttttcacTGATCATTTTGGATATTCCATTTC
GATTTTCGAACACTTTTACATCCTGGAAGTTAATCATCCTTCTTTCCTTG
GTCGGGTTTTTCTTTCGCTGCGAACATTCTTTGCGGAACTTCCGAGAAGA
TGAGAGTTCCGGTAAACACAAGTAGCGTACCCATCCAGTGGTAAAAAGTG
AACGGATTGCGGAAGTAAACAATAGAAACAATGAGACTCATGAACTTCCG
GAGTGTCAAGATAACGGTAATCGCCAGAGCGGACAGTTCCGATGTCAAAG
TAGTTACGGAAGTCACAcataaaaatctattttttttaaatgggtTTGTA
AAGGAAAATTGGAATAACATTTTGTTTTTGCACATACCTTAAGTGGGTAC
AAAATGACatatgatgataaaacaatacaatacaactacagttgacactc
tctaattcgacgttctactattcgatcggctcccttattcgataaaattt
aaagtCCTCGTCAAccaaaaactctcataaacgacgttcccttcttcgat
aagctcccttatttgatgaaaatccaattccacttgaagatcgaatt Run BLAST on NCBI protein sequence of TCONS_00005312-protein >TCONS_00005312-protein ID=TCONS_00005312-protein|Name=TCONS_00005312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MEEGLTHASLRNNIGRAGDGESTFDDEEFWESVPVFPDREKEARSVIREK
LNERKQAFKSEYEERNKLERAQRAEEEIDVSLHARKQAFFDDASDRETVI
KTSTALSVHLDETSLNDRKQAFLDDAAERNNRRGSSLSDDITEGSLHERK
KAFFDDAKNREKVDKTSTALSEHLEETTLHDRKQAFLQDADERGRFQRTE
ASEIQESLLSDRKKAFFQDASEREKFSKTEASEIQGSIHSERTKAFFDEA
SQREKFRRTDTQEGVDMGVIANRRASFRKKDAEIQAEKAVDVRENVSKTQ
HRARMIKDENQLFKVLNRRRAKLEVEEEIKEQFPEEGSVNSQEDSVDGNN
NSVEESTSEKILDESKSEYGWKV Run BLAST on NCBI transcript from alignment at sc0000052:742993..746383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005312 ID=TCONS_00005312|Name=TCONS_00005312|organism=Clytia hemisphaerica|type=transcript|length=3391bp|location=Sequence derived from alignment at sc0000052:742993..746383+ (Clytia hemisphaerica)
TGAGCATCAAGAGAAAGCAGTAAAAAAAGGTTTCGGCATCTGTTGTAGTT
TTGAAGCCTAGGGAGCACTGATTCAAATTCGAGGTCTTGCGTTTCAAGGT
TTTTGGCGTTTCACGCGTTTTCGTTCAGTCTAGACCCACTGGATATGTTA
GAAGATGGAAGAAGGGCTGACACATGCAAGTTTGAGAAATAGTAAGGAAT
TTTCTTCTTATCTCTCTCTTTTTCTGTGCTTGCAGAGAAAATCTCTCAtt
tcgaacattttcaaaataccATCATAACAAGCgaacaaaaaagtgaattt
ctctgtctttgaaaattagaaCTACTGTAGATGATATCAAAAGGCAACGT
TTTGTATATAAGATTTTAGTTTAAATGGAAACTTCAGTCCAAGGTAAGAA
GGTTTCGTTATaaaatcaaagaagaaaaatacTGAAGTTGCTTTATTGAC
GTCGAGCAAAATCTAGCTTGAGAGTCTAAATACAAGGCTTAAGACATCAT
TTAGTCTGAAGAATATTAAACTCAAAGAACTGTTCAGCAACTATGTATTT
TGTCGACTTTTGACAGTTTGACAGTTTCTCATCCCGGTAGATGTATAGCA
CGTTTCAAGTCATGAAGTGGAAAATAGGTAAAACGACatgttttgtaaaa
aattatCTGTTTACTTTGTCTAATTCTTATTTTAGACATTGGACGAGCAG
GTGACGGTGAATCTACTTTTGACGATGAAGAATTCTGGGAAAGTGTCCCC
GTTTTCCCCGATCGTGAGAAAGAAGCCCGATCTGTAATCCGAGAAAAATT
GAACGAACGGAAACAAGCTTTTAAGAGTGAGTATGAGGAGAGGAATAAAT
TGGAACGTGCGCAACGAGCGGAGGAGGAAATCGATGTCTCATTGCACGCG
CGCAAACAAGCGTTCTTCGACGACGCCAGTGATCGGGAAACGGTGATCAA
AACTTCTACCGCACTATCTGTACATTTAGATGAAACATCTTTGAACGATC
GAAAACAAGCGTTTCTGGATGACGCAGCGGAGAGAAATAATAGACGAGGC
TCTAGTCTATCGGATGATATCACCGAAGGCTCGCTTCACGAACGGAAAAA
AGCGTTTTTCGATGACGCAAAAAATCGAGAGAAAGTCGATAAAACTTCGA
CAGCTTTGAGTGAACATTTAGAGGAGACAACTTTGCATGATCGGAAACAG
GCGTTTCTACAGGACGCGGACGAACGGGGAAGATTTCAACGTACAGAAGC
GTCCGAAATTCAAGAATCCTTATTATCGGACAGGAAGAAAGCATTTTTTC
AAGATGCAAGCGAAAGAGAGAAATTTAGCAAAACTGAGGCATCTGAGATT
CAAGGTTCGATACATTCGGAACGTACGAAGGCGTTTTTCGATGAGGCCTC
ACAGAGAGAGAAATTCAGGCGGACTGATACACAAGAGGGCGTTGATATGG
GCGTGATTGCCAATCGACGCGCAAGTTTTCGTAAAAAGGATGCTGAAATT
CAAGCAGAGAAAGCGGTAGATGTGCGGGAAAATGTGAGCAAGACACAACA
TCGAGCTCGAATGATTAAAGATGAGAATCAATTGTTTAAAGTTTTGAATC
GAAGGCGCGCCAAACTGGAAGTTGAGGAGGAAATAAAAGAACAATTCCCA
GAGGAAGGGAGTGTGAATTCACAAGAAGATTCTGTTGATGGGAACAACAA
TTCTGTTGAGGAATCAACGAGTGAGAAGATTCTGGATGAAAGTAAAAGCG
AGTACGGATGGAAAGTGTGAAGAGATCGTTTGAGAAAGATGCTGATTCAC
CTTGTATGAATCTTGAAATTTCGTTGTCGAGGGGAAGGAGGAGTCGTATT
CGAAGGGTAGAGCATAATTCGGCAAAACAGATGCACGTAAAGAAAATCGA
GAAGTCTTCCCATAATGAAACATTGATGGAGAGAGATTGATGATACGAAA
GCGTAATGTATTTACTCGGTGTCTAGCGGAGTAAATGTTCTTGGAAAGTG
TAAAATTGTGATATTTTGTATAAACATTTTCGAACAAGTTTTGTATCCTA
GGTGAATGAATATtgtcaaaaatgaagaaacaaataaaaataattcaccG
ATAATTCACTACCTCTATCTTATTCAATACCAAATTCGAAAAtaacatac
cttatcggggaaaacttcgtccgggaaaagtgacgaaattttggacatgt
gacgaatattttccccggccttaatgcatttaccaactaccagccagtga
cgaatttttccccgtcgaaaatttttcccgacgaagttttccccgttAAG
GTAATAAAAGTCTATACTAGAATACTAATTTTATAAAATATGCAGTAAAA
GTCTTTAAAATACATTGAAATAGTTATAAattaaagaaagtttgagtttt
AAAAACTCACATAATCTACATAATCTATAAGCACTGGGCTATCTACTCCA
AAAATGTGTGGGTACAAATTCATTTAAATGTATTCCAGTGGGCTGGAGAC
TTAACACAACAAATTACACATAATCTTGAAACTTTTgtgaattttgcaaa
atttttagatGGAAAAGCCTCTTTATACTTCGCCGAGAGGGAAGAACTTT
AATCATTGGtatttaataaaattcaaaaacataaaAGCTTCCATTTTGTT
CTCCGAAATGATTCATAAATGATTTAGGAATAAagcaaaatttgttttca
agtATTTCTGATTTATACCTCGTTCGCATTGTCAACTTTAACATACTTTg
tgtttttattcatttttacaaaatttgtcAATGTATCAAAATCTtactat
tttaaagattttcttttcacTGATCATTTTGGATATTCCATTTCGATTTT
CGAACACTTTTACATCCTGGAAGTTAATCATCCTTCTTTCCTTGGTCGGG
TTTTTCTTTCGCTGCGAACATTCTTTGCGGAACTTCCGAGAAGATGAGAG
TTCCGGTAAACACAAGTAGCGTACCCATCCAGTGGTAAAAAGTGAACGGA
TTGCGGAAGTAAACAATAGAAACAATGAGACTCATGAACTTCCGGAGTGT
CAAGATAACGGTAATCGCCAGAGCGGACAGTTCCGATGTCAAAGTAGTTA
CGGAAGTCACAcataaaaatctattttttttaaatgggtTTGTAAAGGAA
AATTGGAATAACATTTTGTTTTTGCACATACCTTAAGTGGGTACAAAATG
ACatatgatgataaaacaatacaatacaactacagttgacactctctaat
tcgacgttctactattcgatcggctcccttattcgataaaatttaaagtC
CTCGTCAAccaaaaactctcataaacgacgttcccttcttcgataagctc
ccttatttgatgaaaatccaattccacttgaagatcgaatt Coding sequence (CDS) from alignment at sc0000052:742993..746383+ >TCONS_00005312 ID=TCONS_00005312|Name=TCONS_00005312|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at sc0000052:742993..746383+ (Clytia hemisphaerica)
ATGGAAGAAGGGCTGACACATGCAAGTTTGAGAAATAACATTGGACGAGC
AGGTGACGGTGAATCTACTTTTGACGATGAAGAATTCTGGGAAAGTGTCC
CCGTTTTCCCCGATCGTGAGAAAGAAGCCCGATCTGTAATCCGAGAAAAA
TTGAACGAACGGAAACAAGCTTTTAAGAGTGAGTATGAGGAGAGGAATAA
ATTGGAACGTGCGCAACGAGCGGAGGAGGAAATCGATGTCTCATTGCACG
CGCGCAAACAAGCGTTCTTCGACGACGCCAGTGATCGGGAAACGGTGATC
AAAACTTCTACCGCACTATCTGTACATTTAGATGAAACATCTTTGAACGA
TCGAAAACAAGCGTTTCTGGATGACGCAGCGGAGAGAAATAATAGACGAG
GCTCTAGTCTATCGGATGATATCACCGAAGGCTCGCTTCACGAACGGAAA
AAAGCGTTTTTCGATGACGCAAAAAATCGAGAGAAAGTCGATAAAACTTC
GACAGCTTTGAGTGAACATTTAGAGGAGACAACTTTGCATGATCGGAAAC
AGGCGTTTCTACAGGACGCGGACGAACGGGGAAGATTTCAACGTACAGAA
GCGTCCGAAATTCAAGAATCCTTATTATCGGACAGGAAGAAAGCATTTTT
TCAAGATGCAAGCGAAAGAGAGAAATTTAGCAAAACTGAGGCATCTGAGA
TTCAAGGTTCGATACATTCGGAACGTACGAAGGCGTTTTTCGATGAGGCC
TCACAGAGAGAGAAATTCAGGCGGACTGATACACAAGAGGGCGTTGATAT
GGGCGTGATTGCCAATCGACGCGCAAGTTTTCGTAAAAAGGATGCTGAAA
TTCAAGCAGAGAAAGCGGTAGATGTGCGGGAAAATGTGAGCAAGACACAA
CATCGAGCTCGAATGATTAAAGATGAGAATCAATTGTTTAAAGTTTTGAA
TCGAAGGCGCGCCAAACTGGAAGTTGAGGAGGAAATAAAAGAACAATTCC
CAGAGGAAGGGAGTGTGAATTCACAAGAAGATTCTGTTGATGGGAACAAC
AATTCTGTTGAGGAATCAACGAGTGAGAAGATTCTGGATGAAAGTAAAAG
CGAGTACGGATGGAAAGTGTGAATGGAAGAAGGGCTGACACATGCAAGTT
TGAGAAATAACATTGGACGAGCAGGTGACGGTGAATCTACTTTTGACGAT
GAAGAATTCTGGGAAAGTGTCCCCGTTTTCCCCGATCGTGAGAAAGAAGC
CCGATCTGTAATCCGAGAAAAATTGAACGAACGGAAACAAGCTTTTAAGA
GTGAGTATGAGGAGAGGAATAAATTGGAACGTGCGCAACGAGCGGAGGAG
GAAATCGATGTCTCATTGCACGCGCGCAAACAAGCGTTCTTCGACGACGC
CAGTGATCGGGAAACGGTGATCAAAACTTCTACCGCACTATCTGTACATT
TAGATGAAACATCTTTGAACGATCGAAAACAAGCGTTTCTGGATGACGCA
GCGGAGAGAAATAATAGACGAGGCTCTAGTCTATCGGATGATATCACCGA
AGGCTCGCTTCACGAACGGAAAAAAGCGTTTTTCGATGACGCAAAAAATC
GAGAGAAAGTCGATAAAACTTCGACAGCTTTGAGTGAACATTTAGAGGAG
ACAACTTTGCATGATCGGAAACAGGCGTTTCTACAGGACGCGGACGAACG
GGGAAGATTTCAACGTACAGAAGCGTCCGAAATTCAAGAATCCTTATTAT
CGGACAGGAAGAAAGCATTTTTTCAAGATGCAAGCGAAAGAGAGAAATTT
AGCAAAACTGAGGCATCTGAGATTCAAGGTTCGATACATTCGGAACGTAC
GAAGGCGTTTTTCGATGAGGCCTCACAGAGAGAGAAATTCAGGCGGACTG
ATACACAAGAGGGCGTTGATATGGGCGTGATTGCCAATCGACGCGCAAGT
TTTCGTAAAAAGGATGCTGAAATTCAAGCAGAGAAAGCGGTAGATGTGCG
GGAAAATGTGAGCAAGACACAACATCGAGCTCGAATGATTAAAGATGAGA
ATCAATTGTTTAAAGTTTTGAATCGAAGGCGCGCCAAACTGGAAGTTGAG
GAGGAAATAAAAGAACAATTCCCAGAGGAAGGGAGTGTGAATTCACAAGA
AGATTCTGTTGATGGGAACAACAATTCTGTTGAGGAATCAACGAGTGAGA
AGATTCTGGATGAAAGTAAAAGCGAGTACGGATGGAAAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005312-exon-sc0000052-1491911889:742993..743183 | TCONS_00005312-exon-sc0000052-1491911889:742993..743183 | Clytia hemisphaerica | exon |
| TCONS_00005312-exon-sc0000052-1510915933:742993..743183 | TCONS_00005312-exon-sc0000052-1510915933:742993..743183 | Clytia hemisphaerica | exon |
| TCONS_00005312-exon-sc0000052-1575043694:742993..743183 | TCONS_00005312-exon-sc0000052-1575043694:742993..743183 | Clytia hemisphaerica | exon |
| TCONS_00005312-exon-sc0000052-1491911889:743678..746383 | TCONS_00005312-exon-sc0000052-1491911889:743678..746383 | Clytia hemisphaerica | exon |
| TCONS_00005312-exon-sc0000052-1510915933:743678..746383 | TCONS_00005312-exon-sc0000052-1510915933:743678..746383 | Clytia hemisphaerica | exon |
| TCONS_00005312-exon-sc0000052-1575043694:743678..746383 | TCONS_00005312-exon-sc0000052-1575043694:743678..746383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:742993..746383 + |
Blast
The following BLAST results are available for this feature:
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