TCONS_00005310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005310
Unique NameTCONS_00005310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005310 ID=TCONS_00005310|Name=TCONS_00005310|organism=Clytia hemisphaerica|type=transcript|length=998bp
ACAGTTATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACATCAACCG
CCGCCACCAGTACACCGCCTTCAACCACCCCTAACACATCTTCTTACACC
CTTGCCGCCACCACGTCACCTTCTTCAATATCTTCAATATCTTCGATATC
TCCTGGTCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACGCCAAATA
CGTTGTCACTAAGAGACCATCAAACGTCAGGTTACCACCCTTCAGGGAAC
ATAACGGGTGGCAACACCATTACGAACAATGTTAGTAGTAACATTACAAC
AAACTCTCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAAAATGATT
CAGTGCCCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGAACAACAC
CCTCTAAAGGTGACATCGCTAGATGGAAAGACCTTACCTAATCATACAGT
AACCCGGAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGACGTCCAT
CGAACGAGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGAACCGGTC
AGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGG
GAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACAACA
GTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAACCA
CCCGCCCAAGATACCCTGCGTTAACTCACACTTCATAAGCACCACCAATA
AGCACCTTTAATAACCTTCTTTCCTTTTCCCACCCAATCTTTCTTTTATC
CGCCCTTAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACACCTT
GCCACCCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCCTCAC
TCCGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACACCAC
CTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAACG
Run BLAST on NCBI

transcript from alignment at sc0000052:639888..643305+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005310 ID=TCONS_00005310|Name=TCONS_00005310|organism=Clytia hemisphaerica|type=transcript|length=3418bp|location=Sequence derived from alignment at sc0000052:639888..643305+ (Clytia hemisphaerica)
ACAGTTATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACATCAACCG
CCGCCACCAGTACACCGCCTTCAACCACCCCTAACACATCTTCTTACACC
CTTGCCGCCACCACGTCACCTTCTTCAATATCTTCAATATCTTCGATATC
TCCTGGTCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACGCCAAATA
CGTTGTCACTAAGAGACCATCAAACGTCAGGTTACCACCCTTCAGGGAAC
ATAACGGGTGGCAACACCATTACGAACAATGTTAGTAGTAACATTACAAC
AAACTCTCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAAAATGATT
CAGTGCCCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGAACAACAC
CCTCTAAAGGTGACATCGCTAGATGGAAAGACCTTACCTAATCATACAGT
AACCCGGAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGACGTCCAT
CGAACGAGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGAACCGGTC
AGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGG
TATTGTGAATCTCTTatgaaatgaaataattttgaactTAAATAATTTCA
CCATCGTTAGagaaaaaatggcatttcaatAAATGAACGTCAAACAGGGA
AACAAATggatatctatatattaatagcggtgctttgtgtgtctgtgtgt
caccactttcgttttcgctttgtttgtgttttaaaattatgacttttagt
ctcttgctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaacatcc
aaaggacttttagtgcgttcagctacagcttaaccggcgtgcgaagccgg
gtaccggctagtttttCATACACAGGATAGGTGATGCTTTTAATTTTGCT
AATTCTCTATGGATATCTGTTAGACGtccaaattttttggaaaatactaG
AAGACATTGAACCTGGAGTTTTTGTCGAGCAAACAAACACAAACAAATAC
TCCATGTAGTTCGAATTCGTGGTGTCCCTCGAGGGCCGAATGACAGGGAG
TCAGCTGCACGAGTAGAGactttttttcagtgatttttttaaggatgttt
ttttttttttttttgtaaaagtgtACGAGATTTGTGAGTTGATTTACCTT
GCGCTTTGTAATGTACAGCGACATTGAGGGATATAACCTCATCTTTCTAC
TATTACAGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCA
TTCACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCA
ACAAAACCACCCGCCCAAGGTATCCTGATTGAATATTCTTGGTATTATGA
TTACACTCGTGCGTAGAACGAAATTCTACGTCATATCCCTGGCTCCGTTG
CCCAAAAAGTTACAAAAGTTCAACATTTAAAGGGAATATTTTCACTTCTT
TTGTAACATTTGGATTTTCCCCGATgaagctcgaagggctagaaaAGAAT
CTTCGATCTTTCCCAAACAAGAAAATagactttctttgttttatgcGATA
CACTTTTCGGAATATTGCGATAGGTTCTACTTTCAATTCAACGTTTGTAT
GAAAGCCACGTTGGTCCATTTTGGATAGGAAAGAAGCTAAGCTTTCGCTC
TAGCCCTTCAAGCTTTAAACTACATGACATATGGCGCAGACACCAAATTA
TCTGTGCAACGGTTTAATTTGCAGATCAACAACCTTTTGTTATTTCGAAT
TAGACGTCGATATCCCGTAGTCCATATGTAAAATAAACTAACAGCAGGAT
TTTCCGGTTTCTCTGCAGAATGCCTATGTATCATTTTGTTTATTAAGTTT
TAATGAATATTTATGTGCAATAACTTCACTGTCTATTTGTCTGTTTGTCT
GCACTGTTTCATCCGTAGCACGTATACATGTAACATACTAATTAAATGCA
CTTCTCCCCAGTTGCTTCGGGTTCCCAGGCGAGCAGTTTAGAATTCATTC
AGTAAACAGTTTGATCTATTTTCTATCTAGATACCCTGCGTTAACTCACA
CTTCATAAGCACCACCAATAAGCACCTTTAATAACCTTCTTTCCTTTTCC
CACCCAATCTTTCTTTTATCCGCCCTTAGGTCTACTCCAGCTTTTGTCGG
CCCAAAAATATCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACT
ATCCCGAACACTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCAC
AGAATACAGGCTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACC
AACACCTTATTAATAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003022XLOC_003022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005310-exon-sc0000052-1491911889:639888..640486TCONS_00005310-exon-sc0000052-1491911889:639888..640486Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1510915933:639888..640486TCONS_00005310-exon-sc0000052-1510915933:639888..640486Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1575043694:639888..640486TCONS_00005310-exon-sc0000052-1575043694:639888..640486Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1491911889:642196..642306TCONS_00005310-exon-sc0000052-1491911889:642196..642306Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1510915933:642196..642306TCONS_00005310-exon-sc0000052-1510915933:642196..642306Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1575043694:642196..642306TCONS_00005310-exon-sc0000052-1575043694:642196..642306Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1491911889:643018..643305TCONS_00005310-exon-sc0000052-1491911889:643018..643305Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1510915933:643018..643305TCONS_00005310-exon-sc0000052-1510915933:643018..643305Clytia hemisphaericaexon
TCONS_00005310-exon-sc0000052-1575043694:643018..643305TCONS_00005310-exon-sc0000052-1575043694:643018..643305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:639888..643305 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.05122	0.246736	10.7298	6.38062	4.88374	4.23351	1.42384	1.97895	2.83935	2.14039	2.08835	1.31914	1.43233	2.03381	2.25061	0.938804	0	0.353881	0.785554	2.1158	2.49089	0	0.346462	1.62675	0.754992	0.840678	0.888712	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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