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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005265 ID=TCONS_00005265|Name=TCONS_00005265|organism=Clytia hemisphaerica|type=transcript|length=2818bpRun BLAST on NCBI protein sequence of TCONS_00005265-protein >TCONS_00005265-protein ID=TCONS_00005265-protein|Name=TCONS_00005265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=896bp MINDTNLADFFSQPLQQNRSQMLSSSRPSWRRSMRKRRANSDSELPMLPIRun BLAST on NCBI transcript from alignment at sc0000052:66257..91138+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005265 ID=TCONS_00005265|Name=TCONS_00005265|organism=Clytia hemisphaerica|type=transcript|length=24882bp|location=Sequence derived from alignment at sc0000052:66257..91138+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:66257..91138+ >TCONS_00005265 ID=TCONS_00005265|Name=TCONS_00005265|organism=Clytia hemisphaerica|type=CDS|length=40365bp|location=Sequence derived from alignment at sc0000052:66257..91138+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005265 vs. Swiss-Prot (Human)
Match: DMTF1 (Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens GN=DMTF1 PE=1 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 4.282e-86 Identity = 136/270 (50.37%), Postives = 189/270 (70.00%), Query Frame = 3
Query: 765 ANRSWLTERIDREAAKEQGVAWKDGPWSLEEEELLRTNIDNYCERNSIVDPTLMIYSEIKDLRRSFYREINKGLNRTLFAIYRKIRRIYDTRNYAGKYNKXXXXXXXXXXXXXGTNWTDIGQAMGRSAASVKDKIRLLKNKKNTGHWSDDELKLLSETVHTLTKTKVGESVTTGINWKLVAEKLGTRNEKQCFGKWLNFLNWKEAGGKKWIKTDEIELISRVAYACVTCENDLDWAKLSNGWESVRSPQWLRMKWWKLKKEVPNYKTCSF 1574
+++W T + D+++ +G WK G WS EE ++L NI+ Y + I D T +I+ KD R+ FYR I GLNR LFA+YR++ R+YD RN+ GKY EE ++L EL + G +W IG A+GRSA+SVKD+ RL+K+ NTG W+++E K L+E VH LT T+ G+ VT G++W VAE++GTR+EKQC KWLN+LNWK++GG +W K DEI LI R+A V END++W L+ GW SVRSPQWLR KWW +K+++ N+K SF
Sbjct: 130 VSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSF 399 The following BLAST results are available for this feature:
BLAST of TCONS_00005265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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