TCONS_00005265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005265-protein
Unique NameTCONS_00005265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005265-protein ID=TCONS_00005265-protein|Name=TCONS_00005265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=896bp
MINDTNLADFFSQPLQQNRSQMLSSSRPSWRRSMRKRRANSDSELPMLPI
IDYDSHGINDDSAIDLLSDSIDRFDRATMDPSQMFIGLSNNMSKSFTSVN
ANALNLMMDDNHINTNDDAYGLYNENITGPILPAQMFYGTNADDDDDDND
ADDSQNKLTDDDDDDDEPVMEKNTNFTEDELNDLFPMAGESQPETVLRHI
PAKYRKSSLPAEVLNRPLETVEVKDNYIANRSWLTERIDREAAKEQGVAW
KDGPWSLEEEELLRTNIDNYCERNSIVDPTLMIYSEIKDLRRSFYREINK
GLNRTLFAIYRKIRRIYDTRNYAGKYNKEEEDRLMELHEELGTNWTDIGQ
AMGRSAASVKDKIRLLKNKKNTGHWSDDELKLLSETVHTLTKTKVGESVT
TGINWKLVAEKLGTRNEKQCFGKWLNFLNWKEAGGKKWIKTDEIELISRV
AYACVTCENDLDWAKLSNGWESVRSPQWLRMKWWKLKKEVPNYKTCSFLE
ILTHLQGPYVDAILEQCKKKTKKKKKSKVKAEHVDNEGTTQPDQPEAVTS
ITLTIHNTETVPTQIYTFPTNMTYEPLRVGLVLTPSISTNQNSSFTLSTN
QHELNQSASNQNVPSFDSLINAAQSIVTTTTNQLPGYVLPEHLRTSNHLN
NTPSIAPNIRLVNSSNQQDIPSFAPSLQLASNSNPKLALEPPRTLNQQDV
PYFASNLQSANSSNKKLTLEPSRTLKQQEISSFSSNLQSSNKTSQKLTLD
SSKTINQAMILPKIESTFRTNRNKHPSVFTNTNARPVTTNNQKVSPQNGS
NLNIKNITSSNAGLILQTPTTVKMEIPNLQDSVLNDNETLTLNGTLVVDQ
NSDLNLNQNENSSMGINLDNVANSGSDGTINIQVLDASINYAISST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003006XLOC_003006Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005265TCONS_00005265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR017877Myb-like_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 251..319
e-value: 35.0
score: 3.9
coord: 322..369
e-value: 2.2E-7
score: 40.6
coord: 371..430
e-value: 6.3E-8
score: 42.3
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 324..364
e-value: 1.9E-7
score: 31.0
coord: 372..428
e-value: 2.5E-9
score: 37.0
NoneNo IPR availableGENE3D1.10.10.60coord: 368..429
e-value: 1.6E-9
score: 37.1
NoneNo IPR availableGENE3D1.10.10.60coord: 318..367
e-value: 2.0E-8
score: 33.5
NoneNo IPR availableGENE3D1.10.10.60coord: 239..317
e-value: 0.13
score: 11.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 773..801
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 525..544
NoneNo IPR availableCDDcd00167SANTcoord: 325..367
e-value: 4.42235E-4
score: 37.9402
NoneNo IPR availableCDDcd00167SANTcoord: 375..428
e-value: 1.61767E-5
score: 42.5626
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 367..432
score: 11.575
IPR017877Myb-like domainPROSITEPS50090MYB_LIKEcoord: 437..487
score: 4.252
IPR017877Myb-like domainPROSITEPS50090MYB_LIKEcoord: 318..362
score: 6.179
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 303..374
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 370..432

Blast
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BLAST of TCONS_00005265-protein vs. Swiss-Prot (Human)
Match: DMTF1 (Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens GN=DMTF1 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.650e-91
Identity = 137/278 (49.28%), Postives = 193/278 (69.42%), Query Frame = 0 
Query:  229 ANRSWLTERIDREAAKEQGVAWKDGPWSLEEEELLRTNIDNYCERNSIVDPTLMIYSEIKDLRRSFYREINKGLNRTLFAIYRKIRRIYDTRNYAGKYNKEEEDRLMELHEELGTNWTDIGQAMGRSAASVKDKIRLLKNKKNTGHWSDDELKLLSETVHTLTKTKVGESVTTGINWKLVAEKLGTRNEKQCFGKWLNFLNWKEAGGKKWIKTDEIELISRVAYACVTCENDLDWAKLSNGWESVRSPQWLRMKWWKLKKEVPNYKTCSFLEILTHLQ 506
             +++W T + D+++   +G  WK G WS EE ++L  NI+ Y +   I D T +I+   KD R+ FYR I  GLNR LFA+YR++ R+YD RN+ GKY  EE ++L EL  + G +W  IG A+GRSA+SVKD+ RL+K+  NTG W+++E K L+E VH LT T+ G+ VT G++W  VAE++GTR+EKQC  KWLN+LNWK++GG +W K DEI LI R+A   V  END++W  L+ GW SVRSPQWLR KWW +K+++ N+K  SF  ++  L+
Sbjct:  130 VSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLK 407
The following BLAST results are available for this feature:
BLAST of TCONS_00005265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMTF11.650e-9149.28Cyclin-D-binding Myb-like transcription factor 1 O... [more]
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