TCONS_00005240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005240
Unique NameTCONS_00005240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005240 ID=TCONS_00005240|Name=TCONS_00005240|organism=Clytia hemisphaerica|type=transcript|length=388bp
GAAATATACATGGTCAGGAAGTCGGCTTGGTTCGGAACTCGAggttggtt
ttttttttattttggtcacgtgatcgattcGTATGTGCAGATTTCGGCGA
GGCGACAAGACGAAGGTGCTACTTCAGGActgaaatttttgattattatt
atttattataatttattaCTGATCACCAACACAACAAAAACTAAACaaaa
aaaataaaaacaacctcAAAAAAATGGTGAGAACGAGTGGGACTTGTTGT
GTTTTTCCTGGTTGTCCTGTCTATTCTGGTTTACCTCAGTACAAGGGAGT
TAGTCCATATTAGAGCTGACTTGTAAACTAAAAGTTGTTGTAACCGTATC
TGATGGAGCTTCCTTCAATAGAGCTTTCTTTATATGTC
Run BLAST on NCBI

transcript from alignment at sc0000051:42483..42870

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005240 ID=TCONS_00005240|Name=TCONS_00005240|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0000051:42483..42870 (Clytia hemisphaerica)
GACATATAAAGAAAGCTCTATTGAAGGAAGCTCCATCAGATACGGTTACA
ACAACTTTTAGTTTACAAGTCAGCTCTAATATGGACTAACTCCCTTGTAC
TGAGGTAAACCAGAATAGACAGGACAACCAGGAAAAACACAACAAGTCCC
ACTCGTTCTCACCATTTTTTTgaggttgtttttattttttttGTTTAGTT
TTTGTTGTGTTGGTGATCAGtaataaattataataaataataataatcaa
aaatttcagTCCTGAAGTAGCACCTTCGTCTTGTCGCCTCGCCGAAATCT
GCACATACgaatcgatcacgtgaccaaaataaaaaaaaaaccaaccTCGA
GTTCCGAACCAAGCCGACTTCCTGACCATGTATATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002981XLOC_002981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005240-exon-sc0000051-1491911889:42483..42870TCONS_00005240-exon-sc0000051-1491911889:42483..42870Clytia hemisphaericaexon
TCONS_00005240-exon-sc0000051-1510915933:42483..42870TCONS_00005240-exon-sc0000051-1510915933:42483..42870Clytia hemisphaericaexon
TCONS_00005240-exon-sc0000051-1575043694:42483..42870TCONS_00005240-exon-sc0000051-1575043694:42483..42870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:42483..42870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1982	0.193276	0.897647	0	2.81184	1.9009	0.509634	1.78583	0.94146	0.452877	1.54197	0.95799	0.863857	0.547833	0.337633	0.120777	0	0.152503	0.210691	0.440945	0.574892	0.352999	0	0.41321	0.70657	0.949587	0.795758	0.451298	0.219986	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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