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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005224 ID=TCONS_00005224|Name=TCONS_00005224|organism=Clytia hemisphaerica|type=transcript|length=3045bp
CTCTGAGGTAAACAGAGAGAAATGTGACTTCTTCATTTAGGGTTTAGAAA
AAACATCAGTCAAGAAAGCACTTTTACCaaagatgaaaattttccaattt
ttgacaATCGCGTCAATTCTTATAGGAGCAACACTTTGCATCAGTCCATC
ATGGCAACGTATCTCGCAAGACGACGGTAAAATGTTGAGTGTCTCATGGG
ACTTCAACGCTAACGAAACCCTCCTCAACGCTCGTATTAAACACAATGAC
GGACGTATAGTGGCCGGAATGAACAAAACCCAGGTTTTGACCTTCGATCC
GGATTTTACCATGGTATACGGGACTTCAATCAGTATGTTTATCAAACCAT
TCAACGTCTCTCTACACTTTGGCTCCTACAACCTAAACATCAAGACAACA
AACGGTGTCAAAGATTTTGCCTACAATGCCGCGTTTGAGTTGGCCAAGAA
AACTATCGAAGATGTTGAAGAAGTGTTGATTGAGGAAATCGAAAGTGGCG
AAGGAGGGCTGGACACGAACGTCATTCTGATTATCGTTGCAGCCAGTGTG
TTCCTTTGTGTGGTTGTCATGGTGATTCTTATTTGCTACAAGAAACACTA
CATGAAGGAAGCGAACATGGAAAATCCGAAAAAAGTTGCTCCTGGAATTT
GATCATAACAAAGTCCACAATGTTCAGGCCATATCGATATAAACAATCCA
AGTAAGACAAAAGGCAGGACGGTGATGTTATCAAAGCAATTATAAAAACT
ACCTTTCGAAAGACATTTTGGTTAAGAAGATGGGACTTTCCGAGTTATGT
TATATATACAAAGTAAAAGACTAATAAAAACCAAGAAATATTATGACAAT
AATTCCCTAATCGTGAaatcaatttgtttttttctccgtTTTTCGAAGTT
CAATATTATCTCTGTTCTGAGCAATTGGAACAAATTCTGGTTTCAAGAGT
TGTACAGAAGATTTAGGCTTCATGACCACACCGTTCGGCGTTTTATACAA
GTCTATGTGTTGTTGACGACCATTCGAAAGTGTTTTTAAAGTCCCTGACA
CACTCTCTTTGGGAATCTGATCTTTCACGTGGAGGTCAAAGTCCACTTGA
AAACCATTGGCAGTTTTCTGGAGGTGTGTCGGTGGAAGCGCTCTGTTGCT
GGAGATATCGTTCGGAGATTCTTTGATCAGATTCTTTAACAAGTCACTTG
TTGAAACAGGTGATTTCCCTGTCAGTCCAACGTGAGTGAAATTCGATAAC
AAATTATTACAGTCATATTTTATACTAAATCCGCGTTTCGACAGTAAATT
ATTGAGAATATGGCGCTTCATCATTTTATTACACATTGTTTTGTTGATAT
TGTTGTTAGTTGCAACATCTTGACGTGTAGATGTAGTCTTAGCGGCTAAA
GCTTTTTGAAGCAGAGACATAATTTGTTGTGGGTTAGATTGATCGGTTTC
GGTCGGTGTTTTCAACAAATTGACGTTTGATGGATGTGAATTATCAACTG
CATCAGGAGTGCTATCGACAGCATCTTTGTGTTCCATCAGTTTTTGCACC
AGGGCGGAGGGTGATATAGAAATGCTTTGTTTTGAATCATCGCCTCCTTT
CTTCGCTTTTTCAAGGTACCCTCCCTCATTGATGATTTTACCATGTAGAC
ATTTGGGATCATCGGAGGATCGAACACAAGTTTCGAGTAATTTTGTGAAC
TTGGAGCCATCTTCCCCGAAAGTTGTCAGGTTGATTTTTTCGTCTCCCAT
TTTCTTTGTATCTGTCATTCCGAGAAGTTTCTTCAATCCGTTAGTTATGT
CTTCGTTTGCGAGATCTTGTGTTGGTTGTGTCGCTGTTGCTAAAGTGTTG
TTGGcttgttgttgtggttgttgttgttgagtatCTGTTGCGTATGTGTT
ATTCTTTGGCAGGTTTAAGTAATCGAACGAAGGTTTATTCAGCTCTGGTG
TTGTTGCAGCTGTTTCAGCACCTTTCGGCGTTTGTTGTTGTTGGTTTGAT
AGAACGCCTTTCAAGACTCCAAGGAGTTCATCTTTGGAGAGTTTCGATGC
CTGATCCATAAGCTTAGTGTTTGGGTTTTTACTTTCTGGGTTGACTAAGG
TATCACTGAGAAGGGTGGTCTTTGGCGCTTCTTTAGAGGGCGTTTCTTTT
GAAGCGATTTCATTGGATGGTGTCTCTGGTGGCTTAGATGGTGTTTCTGG
CAATGGAGCAGGGTTGACCAGGTTGAATCCATTGCTGGACACTGTATTGT
GTGGGAGATCTGACGTTGAAGAAGTCTTGGTGTCAACGCTTGGTGAAAGA
TTTGGAATGTTATTCGGTAGAAGACTAGCACCGATTTGAGAGATGTTGTT
TGGAGTAGTAGGGTGTGTATTGGTGAGGGTTGAAAGAAGTGGAGTTAAAG
CTGATAGTGGAAGCATTGTTTTTTGTTTCTCATCGGGTGGTGTGTTGCCA
GAGTTTTGATGGATGTTGGTTGGTTTACTATCTGTGAGTGGTTGGTTTGT
GTTGGATTCTTTCATATTCTGCGCAGTGTTCAAACCCGGTTTTTTGTCTT
GTTCGAAGATACTGACGTTGTTCTGCAAAAGGTTTTGAATTGTGTTGACC
AGAGCTGTCTTATCAACCATCGCCGTCGAAGAATTGGTGTGCTCGTTAGT
TTGTGGAGACGTATTTTCCAAAGAAGCACCCACAGGTTGTTTCGAAGATT
GCTTCTCTGGTGTGTTCGAAACAGTCAGCAGTTTGGATAAATCGTTATGA
TTTAATTGTTGGTGAGGAGCTTGTTGCGGTGAAGGTAGATGAAGGTCAGG
GTTACCAGCAGCCATCTGACTATCTGAAGGGTTGGTTGCATTCTCGACTG
ATGGCTGAGAGGCTGTGGAGAGGTTGGCAGCACCTCCATCATATTGTTGC
TTGATTTCTGGGTAATTCTTCAGCAGGTCTTTGAGAGCGTCAGGAGGAAC
GTTGAAGGATAATGTGGCTTTATCGTCATCAGCTTTAGTGATGGAGGAAC
GTTCGTGTCCACCTTCCAACTTCTCGTGCTCTCCAAGAAGGCTCT Run BLAST on NCBI transcript from alignment at sc0000051:566662..571561- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005224 ID=TCONS_00005224|Name=TCONS_00005224|organism=Clytia hemisphaerica|type=transcript|length=4900bp|location=Sequence derived from alignment at sc0000051:566662..571561- (Clytia hemisphaerica)
CTCTGAGGTAAACAGAGAGAAATGTGACTTCTTCATTTAGGGTTTAGAAA
AAACATCAGTCAAGAAAGCACTTTTACCAAAGATGAAAATTTTCCAATTT
TTGACAATCGCGTCAATTCTTATAGGAGGTAAGATCGAGTTCTCAACTCT
CCTGCTGAATTTCAACTCGAGGATTTTTTCGAAGCTTTGGATGAACTTTC
GATGAAAATTGCGTTGTGATGATTCATCAAGCTTCTCGAATGACCTCTTT
TGACCTTTGTGTGGTCGATGATGTCAATTAATGATTTTGAAAATTCATTT
TTCAATTTGTGTTTTCGTGCTGTCAAGGTCGTCTGTTTCAGTTTAACAGC
GTGACAAAATATACTCACCGAGCGTGTATTGTGTAGGAGGATTGTTTCTT
GCTATGATGCTAAGATATGTTGCATGCAATAGCAAAGTAATACGCGACTT
CTTTTAACCAAGAACAGGCAAGATGGAAAAGTTTAGATCAGGTCAATCTT
CTCTTACAGAAGAAAATGTAAAAAATGAAAAAATTATTTAATTACAGATC
AAAATATTTTCACTTAAAATGGACAGACTATAACTTTGTCCGAGACAGAA
ATCCGTCAGAGGGGAAACTTATAAATAAGATATTTAACTTACATTGACTT
TGTTTTCATTTCCATAGCAACACTTTGCATCAGTCCATCATGGCAACGTA
TCTCGCAAGACGACGGTAAAATGTTGAGTGTCTCATGGGACTTCAACGCT
AACGAAACCCTCCTCAACGCTCGTATTAAACACAATGACGGACGTATAGT
GGCCGGAATGAACAAAACCCAGGTTTTGACCTTCGATCCGGATTTTACCA
TGGTATACGGGACTTCAATCAGTATGTTTATCAAACCATTCAACGTCTCT
CTACACTTTGGCTCCTACAACCTAAACATCAAGACAACAAACGGTGTCAA
AGATTTTGCCTACAATGCCGCGTTTGAGTTGGCCAAGAAAACTATCGAAG
ATGTTGAAGAAGGTACACTTCGTCACCAGTTCCCTAGAAATCAAACTTTC
TCTTGTGCTTAGTCCTCTTAACTGGCTAATCCCTTAGTTCTAATTGGAAA
AGCCCAAATCGAGTAATTATTATGACAATGGAGTGAATAAACCCAAAAAA
CCGGGAAATTGAAAATTGTTCCAATATCTATGCTATAGTCTAGGACGAGT
TTCATCTAAGAGGAACAAACGTTAAGACGGGAGTTTTTTTCGGGGGTAGC
TGTTGACACAGATTCTATTTTCCACCGCGCAACATATTACGTTTTATAAT
ATACAAACTATGTTATATCATGATAATATATTGTAGTATACGGACGATGG
CATCGTCTAAGAAGTAACCAATATTTTGTAAAATATGCAAGATTTCAGTT
ACCTACTTTTTAAATTTACAGGGATGTTTCTAGTGAAAAGGGCTGTTATG
CAAACCTTAACTGGCCCATCTACATAAGTCAAACAGTAAAGTAACCGATT
TGTGCAAACACAACAAAATTACGAACCTTAATCTTGAACATTTCTTTTCA
TACAGTGTTGATTGAGGAAATCGAAAGTGGCGAAGGAGGGCTGGACACGA
ACGTCATTCTGATTATCGTTGCAGCCAGTGTGTTCCTTTGTGTGGTTGTC
ATGGTGATTCTTATTTGCTACAAGAAACACTGTAAGTACATGTTCTTAAA
AAAAATAGAACGAACAAAAAGGTGCAAGATGAGAATGGGCTCTTCCAGAA
AAAAATTTTACATGGGAGGTGGAGGATATATTGTCCGGGGAATAGCAAAA
AATCATCAAAATTTGCCTTGTCCGGAGTGTAAATTTGCTCTGTCCGGGGG
TAATTTCGTGTCTGGGGGGTCAGCAGATGCTTGTCCGGGGGGTAGAACCT
ATTGTCCGGGGGGCCAAAAGTCACCCTGTCCGGGGGGTAAATCACTAAAA
ATTGTTATATCCTCCACCCTCCATGTAAAATTTTTTTCTGGAAGAGCTCA
ATACATGAAGTGGATTTAATTTGGCTATCAACCAACATGAGATTTTTGGC
GGAGACTCAATTTGACGATTGTTCAATTTTCTAAAATTTGTCAGGGATTC
AATTTGGCGACTGGGAGATTCTTAAGCTCTGGTAAACTATAAAGAGTAAG
TGGTATTTTATTACAGATGCATTTCAACCCTATTCGCCAAATATAATCCT
AGTCCAAAATAAATTCACTTTAGGTAATCTCTTTCACATACCCCTTTACT
TCCTGTATGAGTTTTTTCGTTAAAAGATGAAAAAATCCTAGAAGGAACCA
CCATTGATCGAACTTCTTCTTTCTCTAAGAGTGAAACTTCATGAGAAATC
TTACGCCCAGAGAAATCAGACGCAATCCACGCCCTTTTTCCTGCGTACAA
AAATTCAGCGTATTATCTAAACCTAAAATCATCTTCAATATTTTTCCCTT
TTAGACATGAAGGAAGCGAACATGGAAAATCCGAAAAAAGTTGCTCCTGG
AATTTGATCATAACAAAGTCCACAATGTTCAGGCCATATCGATATAAACA
ATCCAAGTAAGACAAAAGGCAGGACGGTGATGTTATCAAAGCAATTATAA
AAACTACCTTTCGAAAGACATTTTGGTTAAGAAGATGGGACTTTCCGAGT
TATGTTATATATACAAAGTAAAAGACTAATAAAAACCAAGAAATATTATG
ACAATAATTCCCTAATCGTGAAATCAATTTGTTTTTTTCTCCGTTTTTCG
AAGTTCAATATTATCTCTGTTCTGAGCAATTGGAACAAATTCTGGTTTCA
AGAGTTGTACAGAAGATTTAGGCTTCATGACCACACCGTTCGGCGTTTTA
TACAAGTCTATGTGTTGTTGACGACCATTCGAAAGTGTTTTTAAAGTCCC
TGACACACTCTCTTTGGGAATCTGATCTTTCACGTGGAGGTCAAAGTCCA
CTTGAAAACCATTGGCAGTTTTCTGGAGGTGTGTCGGTGGAAGCGCTCTG
TTGCTGGAGATATCGTTCGGAGATTCTTTGATCAGATTCTTTAACAAGTC
ACTTGTTGAAACAGGTGATTTCCCTGTCAGTCCAACGTGAGTGAAATTCG
ATAACAAATTATTACAGTCATATTTTATACTAAATCCGCGTTTCGACAGT
AAATTATTGAGAATATGGCGCTTCATCATTTTATTACACATTGTTTTGTT
GATATTGTTGTTAGTTGCAACATCTTGACGTGTAGATGTAGTCTTAGCGG
CTAAAGCTTTTTGAAGCAGAGACATAATTTGTTGTGGGTTAGATTGATCG
GTTTCGGTCGGTGTTTTCAACAAATTGACGTTTGATGGATGTGAATTATC
AACTGCATCAGGAGTGCTATCGACAGCATCTTTGTGTTCCATCAGTTTTT
GCACCAGGGCGGAGGGTGATATAGAAATGCTTTGTTTTGAATCATCGCCT
CCTTTCTTCGCTTTTTCAAGGTACCCTCCCTCATTGATGATTTTACCATG
TAGACATTTGGGATCATCGGAGGATCGAACACAAGTTTCGAGTAATTTTG
TGAACTTGGAGCCATCTTCCCCGAAAGTTGTCAGGTTGATTTTTTCGTCT
CCCATTTTCTTTGTATCTGTCATTCCGAGAAGTTTCTTCAATCCGTTAGT
TATGTCTTCGTTTGCGAGATCTTGTGTTGGTTGTGTCGCTGTTGCTAAAG
TGTTGTTGGCTTGTTGTTGTGGTTGTTGTTGTTGAGTATCTGTTGCGTAT
GTGTTATTCTTTGGCAGGTTTAAGTAATCGAACGAAGGTTTATTCAGCTC
TGGTGTTGTTGCAGCTGTTTCAGCACCTTTCGGCGTTTGTTGTTGTTGGT
TTGATAGAACGCCTTTCAAGACTCCAAGGAGTTCATCTTTGGAGAGTTTC
GATGCCTGATCCATAAGCTTAGTGTTTGGGTTTTTACTTTCTGGGTTGAC
TAAGGTATCACTGAGAAGGGTGGTCTTTGGCGCTTCTTTAGAGGGCGTTT
CTTTTGAAGCGATTTCATTGGATGGTGTCTCTGGTGGCTTAGATGGTGTT
TCTGGCAATGGAGCAGGGTTGACCAGGTTGAATCCATTGCTGGACACTGT
ATTGTGTGGGAGATCTGACGTTGAAGAAGTCTTGGTGTCAACGCTTGGTG
AAAGATTTGGAATGTTATTCGGTAGAAGACTAGCACCGATTTGAGAGATG
TTGTTTGGAGTAGTAGGGTGTGTATTGGTGAGGGTTGAAAGAAGTGGAGT
TAAAGCTGATAGTGGAAGCATTGTTTTTTGTTTCTCATCGGGTGGTGTGT
TGCCAGAGTTTTGATGGATGTTGGTTGGTTTACTATCTGTGAGTGGTTGG
TTTGTGTTGGATTCTTTCATATTCTGCGCAGTGTTCAAACCCGGTTTTTT
GTCTTGTTCGAAGATACTGACGTTGTTCTGCAAAAGGTTTTGAATTGTGT
TGACCAGAGCTGTCTTATCAACCATCGCCGTCGAAGAATTGGTGTGCTCG
TTAGTTTGTGGAGACGTATTTTCCAAAGAAGCACCCACAGGTTGTTTCGA
AGATTGCTTCTCTGGTGTGTTCGAAACAGTCAGCAGTTTGGATAAATCGT
TATGATTTAATTGTTGGTGAGGAGCTTGTTGCGGTGAAGGTAGATGAAGG
TCAGGGTTACCAGCAGCCATCTGACTATCTGAAGGGTTGGTTGCATTCTC
GACTGATGGCTGAGAGGCTGTGGAGAGGTTGGCAGCACCTCCATCATATT
GTTGCTTGATTTCTGGGTAATTCTTCAGCAGGTCTTTGAGAGCGTCAGGA
GGAACGTTGAAGGATAATGTGGCTTTATCGTCATCAGCTTTAGTGATGGA
GGAACGTTCGTGTCCACCTTCCAACTTCTCGTGCTCTCCAAGAAGGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005224-exon-sc0000051-1575043694:571434..571561 | TCONS_00005224-exon-sc0000051-1575043694:571434..571561 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1575043694:570550..570894 | TCONS_00005224-exon-sc0000051-1575043694:570550..570894 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1575043694:569881..570006 | TCONS_00005224-exon-sc0000051-1575043694:569881..570006 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1575043694:566662..569107 | TCONS_00005224-exon-sc0000051-1575043694:566662..569107 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1510915933:571434..571561 | TCONS_00005224-exon-sc0000051-1510915933:571434..571561 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1510915933:570550..570894 | TCONS_00005224-exon-sc0000051-1510915933:570550..570894 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1510915933:569881..570006 | TCONS_00005224-exon-sc0000051-1510915933:569881..570006 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1510915933:566662..569107 | TCONS_00005224-exon-sc0000051-1510915933:566662..569107 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1491911889:571434..571561 | TCONS_00005224-exon-sc0000051-1491911889:571434..571561 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1491911889:570550..570894 | TCONS_00005224-exon-sc0000051-1491911889:570550..570894 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1491911889:569881..570006 | TCONS_00005224-exon-sc0000051-1491911889:569881..570006 | Clytia hemisphaerica | exon |
| TCONS_00005224-exon-sc0000051-1491911889:566662..569107 | TCONS_00005224-exon-sc0000051-1491911889:566662..569107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:566662..571561 - |
Blast
The following BLAST results are available for this feature:
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