TCONS_00005221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005221
Unique NameTCONS_00005221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1934

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005221 ID=TCONS_00005221|Name=TCONS_00005221|organism=Clytia hemisphaerica|type=transcript|length=1934bp
AGGTGACTGGTTCACGACGAAGACTTCAGCATGCGGTCTCTTTGCAAGTT
GTTATGCACGAGTAAATAACACAATCAAGGCAGATTTAAGAAGTGCCTTC
AAAACGTTATGTTGTGATGAGACTCCGATGGTCAGAAGAGCTGCCACTGG
AAAACTTGGGGAATTCGCAAAAACAGTAGAAATCGATAACCTAAAAGCAG
ATATCATCCCATCGTTTCAAAGTCTGGCGGTTGACGACCACGATTCTGTC
CGTCTACTGGCAGTTGAAGCGTGTGTCAGTATAGCTGGTATTCTTCCCGA
CAGTGATAAAGAAGCCCTTATAATGCCAACACTCCGAAACGTTGCTCAAG
ATAAGTCATGGAGGGTTCGATACATGGTGGCCgataaaattgttgattta
CAAAAAGCATTGGGACCAGAATTGAGTAAAGTAGACTTAGTACCAGCGTA
TTTCCAACTCCTCAAAGATGTTGAATCAGAAGTAAAGACAGCTGCTGCCC
ACAAAGTCAAAGAATTCTGCGAAGGACTCCCTGACGATATCAAAGAACAA
GCAATTATGTCGAATATTCTTCCATGTGTAAAGgaTTTGGTTATTGACCC
AAACATGCACGTCAAATCAGCCTTAGCTGGTGTTATCATGGGATTGGCTC
CTATGCTGGGTAAAGATAATACAATCGAACATTTGTTACCATTATTTCTA
ACCATGCTTAAAGACGAGTTCCCAGATGTCAGACTGAATATCATTTCCAA
TATTGATAGTGTAAATAAAGTAATTGGCATCCATCAATTATCACAATCTT
TGTTacctgccattatggaattggcCGAAGATCCAAAATGGCGCGTCCGA
CTCGCTATCATCGAATATATGCCTCTCCTTGCCGGACAACTGGGTGTCCA
ATTTTTCGATGAGAAGTTGAATCAATTGTGTATGAGCTGGTTGGTTGATC
ACGTTTATGCAATCCGTGAAGCAGCTGCAATCAACTTGAAAAAACTGATC
GAGAAATTCGGTTTGGAATGGGCTCAAAACACAGTCATTCCTAAAGTACT
TGCCATGGCAAAAGACACTAACTACCTTCACCGCATGACCACCCTCTTCA
CCATCAACACCATGTTAGATGTGGCGGGACCTGAAATCACCGCCCAATTC
ATCCTCCCAACCGTTGTCGGTCTCGCCAAAGATAATGTCGCTAACGTCCG
CTTCAATGTGGCCAAAACTCTACAAAAGATCGCCACTATACTCGACCCAA
ATTCGATCCAGGGGACAATCAAACCATGCTTAAACCAATTGAATACTGAT
ATTGATGTCGACGTCAAATATTTCGCCGGTGAAGCTTTATTAGTTTGTTG
ATTCACAAGAATGGTGCTTCAATTCAATCCAGTGCAAATATTTGCAAGGC
TCTATTCACATCTCGACGAAAGATAATAATTTATGAACTGAATACACGAA
CGAAACCAGACGCCTCTTTTCTTTTCGAGGAAATGTTTTattcaattcaa
attcaaatggaatgaaagatgttttaaaaattcacGAATCAAAAAATATG
GCTTAGCTTAGCTTGTTGGTGAATCGTTTTTCATatcgtaaaaaataaaa
aactttcatcTTTTTTATGTTGCTCTGCTCCAAACTTACAGACAGGCAGA
CAGACAAAATTATTTGTAAATTATAGAAAATTCTCTTCAACGATTATGAA
CTTATTGTAAATGgcgtttttgttgtttttttcggaTCGGAAAAGGAAAA
TTAACTAATTCTTCTTTCTACtactaatttttcttttaaaaatataacTT
CATGTGATCAAAATGACATATTCTACATAAATGTAAAATAGGATGTTTTC
AGCTCCAAGAGATTGTGGTGAGAATAATCGAGTACACACTTCACGAAATG
ATCTCTTTTGTTGTTTATGTCCCTTAAAGTTGCC
Run BLAST on NCBI

transcript from alignment at sc0000051:520613..531347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005221 ID=TCONS_00005221|Name=TCONS_00005221|organism=Clytia hemisphaerica|type=transcript|length=10735bp|location=Sequence derived from alignment at sc0000051:520613..531347- (Clytia hemisphaerica)
AGGTGACTGGTTCACGACGAAGACTTCAGCATGCGGTCTCTTTGCAAGTT
GTTATGCACGAGTAAATAACACAATCAAGGCAGATTTAAGAAGGTAAAGT
ATTTAAACCTTCTTCATCCTAATCACGAATCTTTGCTGGAAAATTTCTTT
TTTGGCAAAAACTCCAGTCAAAAAGAAATTTATGTTAGAAATTTTGATCA
CTAATTTTGTTTATTACTTGACCATCTATGTTTATGAAATAAGAATGTAT
AATGAGAATTTTATATTCGTTTTATTTTTTATTGTCAGTGCCTTCAAAAC
GTTATGTTGTGATGAGACTCCGATGGTCAGAAGAGCTGCCACTGGAAAAC
TTGGGGTATGTAACGAATCTAGAACCAGGGTTCAAACAGACCTGAAAAGA
GGTTTTCCCTAAAGAATGTCAGGGGGACCAAAATATGTCTAAAATGTGTT
TTACGATAATTTGGGAAAAGTCGGGAGAAAGCTGGAAAAATGCTGCTCCA
ATTTAGTAGGATTATGTCTGAATTATATTAAAAATTACAGGGAAGACTCA
GTTGTCTTTTACAACAAATAAGTTTGGAAAATTTGTTCTATTGACACTAA
AGTTGAGGATTACCTTTTGTATTAAAGATAGATACGAGCTTGCTTTGCTT
TATTTTTTCAACAGGAATTCGCAAAAACAGTAGAAATCGATAACCTAAAA
GCAGATATCATCCCATCGTTTCAAAGTCTGGCGGTTGACGACCACGATTC
TGTCCGTCTACTGGCAGTTGAAGCGTGTGTCAGTATAGCTGGTATTCTTC
CCGACAGTGATAAAGAAGCCCTTATAATGCCAACACTCCGAAACGTTGCT
CAAGATAAGTCATGGAGGGTTCGATACATGGTGGCCGATAAAATTGTTGA
TTTACAAAAAGCATTGGGACCAGAATTGAGTAAAGTAGACTTAGTACCAG
CGTATTTCCAACTCCTCAAAGATGTTGAATCAGAAGTAAAGACAGCTGCT
GCCCACAAAGTCAAAGGTGAATATATGTTCACTGGTTTACATAAAGATTA
AGAAACGGTGTATTTCTTCTCAATACTTAAAGTTTGTTGCTTACGCATTC
ATCAGTTGATTAGAAATAACTATCAAAACAAAATTCTACGTTTATTTAAA
AAAATTGACGTCAATCATTAGAATCGAAGTTTTCGAGTTCACTGGTTTAA
ATATTTCAGAGAATAATTGGATTGCAAAACATGGAAGTCATTAGAGTGTT
ATATCGGGAATCAAAAATGAGTAGGGTACTAATCGCACTCTTGAAGACAA
AAAGGTCAAATTTCTGTGAATATATTTACTCATATCGAAACTATTCTTTT
TCTAGAAATTTAATTTTTTAAATTTCAGGGGCCAAAAATAGGACTTTTCT
TAGGAGGACTGAAATCTCTCCAGTTACCCTGATATGTCAACTACTCTTGA
AGTAGACAACTTTAACTGTATTGATGAGTTGTATATGTAATTTATNATGA
AAAAGACATCACCCCCTGGTAAGCTAATCAAGCAGTGTTGTGATTAATAA
TTCATTGTTTCTGTTATAGTTACGTCTCAACTCGATAAAGAAACTATCCA
CAATTGCATTGGCACTTGGAGTGACACGAACAAGAACAGAATTAGTTCCA
TTCCTCACAGACACTATATATGATGAAGATGAAGTCTTGTTAGCCCTTGC
TGAGCAACTGGCTACATTCACGCCACTCATTGGAGGACCAGAATACGTCA
ATATCTTGATCCCACCATTAGAAAGTCTTGCAACAGTTGAGGAAACAGTC
GTTCGTGATAAAGCTGTCGAATCTCTTCGACAAATCGCTGCTGATCACTC
CAATGCTGACTTAGAAAATTATTTTGTTCCACTTGTAAAACGACTTGCAC
AAGGTTTGCTTTCTTTTCATTTGTAATAGCCTGAAATGAAAATAAAAGGC
ATTCTTATTTGTATCAATTTCCTCAAATCCCTCTTAGGCGAGGCCAATTT
AATTTGTTGTTTTACAGGCCAAGCTACCCAAAAAAGAGGGTCGGTTGGTC
GGCGAAAAAATAAAAATAAAAGTAGAATTTCACCTATAAAATCTCCTAAA
AAGACAAAAAAAACTACATCTTGACAAATATGCAAAAAAGAAGAAAAAAG
ACACAAAAAGCTCGAATTCATAGATAAAATGAAAAATTGAACATAAAACC
TTGGAAAAACTACCAAAATTTTGATAATTTGGCAGACTGTAAAGCAATAA
AAATAAAAATACAATACAAAAAATTATTTTGTTTTTATTTCGAGTTTTGA
AATTTCAGGGTCGGTCGGGCCCGTAAAACACCTAATCAAATTGGTCTCGC
CTTACAATGTCTTGATCAATTAACATTTTTGTCCTCTCACTGTTCATTTA
CTCCAAGGAAATATTAAGTTCATTTGACAAACTTGTGACTAATGGCTAAT
ACATTTTATTAGGTGACTGGTTCACGACGAAGACTTCAGCATGCGGTCTC
TTTGCAAGTTGTTATGCACGAGTAAATAACACAATCAAGGCAGATTTAAG
AAGGTAAAGTATTTAAACCTTCTTCATCCTAATCACGAATCTTTGCTGGA
AAATTTCTTTTTTGGCAAAAACTCCAGTCAAAAAGAAATTTATGTTAGAA
ATTTTGATCACTAATTTTGTTTATTACTTGACCATCTATGTTTATGAAAT
AAGAATGTATAATGAGAATTTTATATTCGTTTTATTTTTTATTGTCAGTG
CCTTCAAAACGTTATGTTGTGATGAGACTCCGATGGTCAGAAGAGCTGCC
ACTGGAAAACTTGGGGTATGTAACGAATCTAGAACCAGGGTTCAAACAGA
CCTGAAAAGAGGTTTTCCCTAAAGAATGTCAGGGGGACCAAAATATGTCT
AAAATGTGTTTTACGATAATTTGGGAAAAGTCGGGAGAAAGCTGGAAAAA
TGCTGCTCCAATTTAGTAGGATTATGTCTGAATTATATTAAAAATTACAG
GGAAGACTCAGTTGTCTTTTACAACAAATAAGTTTGGAAAATTTGTTCTA
TTGACACTAAAGTTGAGGATTACCTTTTGTATTAAAGATAGATACGAGCT
TGCTTTGCTTTATTTTTTCAACAGGAATTCGCAAAAACAGTAGAAATCGA
TAACCTAAAAGCAGATATCATCCCATCGTTTCAAAGTCTGGCGGTTGACG
ACCACGATTCTGTCCGTCTACTGGCAGTTGAAGCGTGTGTCAGTATAGCT
GGTATTCTTCCCGACAGTGATAAAGAAGCCCTTATAATGCCCACACTCCG
AAACGTTGCTCAAGATAAGTCATGGAGGGTTCGATACATGGTGGCCGATA
AAATTGTTGATTTACAAAAAGCATTGGGACCAGAATTGAGTAAAGTAGAC
TTAGTACCAGCGTATTTCCAACTCCTCAAAGATGTTGAATCAGAAGTAAA
GACAGCTGCTGCCCACAAAGTCAAAGGTGAATATATGTTCACTGGTTTAC
ATAAAGATTAAGAAACGGTGTATTTCTTCTCAATACTTAAAGTTTGTTGC
TTACGCATTCATCAGTTGATTAGAAATAACTATCAAAACAAAATTCTACG
TTTATTTAAAAAAATTGACGTCAATCATTAGAATCGAAGTTTTCGAGTTC
ACTGGTTTAAATATTTCAGAGAATAATTGGATTGCAAAACATGGAAGTCA
TTAGAGTGTTATATCGGGAATCAAAAATGAGTAGGGTACTAATCGCACTC
TTGAAGACAAAAAGGTCAAATTTCTGTGAATATATTTACTCATATCGAAA
CTATTCTTTTTCTAGAAATTTAATTTTTTAAATTTCAGGGGCCAAAAATA
GGACTTTTCTTAGGAGGACTGAAATCTCTCCAGTTACCCTGATATGTCAA
CTACTCTTGAAGTAGACAACTTTAACTGTATTGATGAGTTGTATATGTAA
TTTATATTTCATTCAGTCATTCGCTCATTCATTTTTTACTCTTCAGAATT
CTGCGAAGGACTCCCTGACGATATCAAAGAACAAGCAATTATGTCGAATA
TTCTTCCATGTGTAAAGGTAAGACTTAAGTACTCTCACATTCCAATTTGA
CAAAGAATGGTACATCATTTTCTGAATTATCCTTATTGCTAAGGGTCGTT
TTATGCCGACTTATTGACTCGTTCAACGTGTAATGTTTCAGTCGTCGTAC
TGTTTTGTGTTCAGATTTTTACAGTCAATATATTTTTTTCTTTTTCTTTC
AGGATTTGGTTATTGACCCAAACATGCACGTCAAATCAGCCTTAGCTGGT
GTTATCATGGGATTGGCTCCTATGCTGGGTAAAGATAAGTAAGTCTTTGT
GTCTATTATGTCGATCTCAATTATACTGTCTTTAGTTTTCACCCAAAATG
GAAGAAAAGTCTTGAAAGCTAGGCTCCAGCAGCAATCTAGTGATGCATTC
TGTTTACTTAAGACCGATCTCCACTTGTGCGCGCTGCGATTGCATCTTTT
GGCTTCAATCCTTTTTGCTTGGAAAAAAGATTACGTCATAAAAATGTAGC
GCGCGCTCGAAAAAAAAGTGGAACACATTTCAACTTTTTTCAACCGTTAC
CTTAAAGGCCAGTCTCCACTAGCGCACGCTTCGATCAAATGAAAAAAGAA
GCAATTCCATTGGCGCGATCTGACGTAACGGTTGAAAAAAGTTGAAATGT
GTTTAACTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAAC
CCATGTTCGTTCGTTCGTTAGTTAGTGTGTTAGTTACCAGCTTTTCTCGA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGGGCCAAA
AAACGGCTTAAAAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCATTA
ATTTTTTCTGATTTTTAGCATGAAAGTAGGGTACAATCATAATTAAAGGA
TGGCTCAAGCAGATTTTTGCAAAAAAATTTTTTTGGCTCAAAAATCGTAT
TTTTATCTATAAGAACCACTTTTAATAAGAATACATCAATGTTCTTAGCC
ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGGCTGAAAAACGAATCTTTATCTATAAGAATCA
CTATTTATGAGCATATATCAATGTTATTAGCCAAATTGTTTTTTTATTAT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGTATTTTGACCA
GTTATGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATA
ACCAGGTAGGTCCATAAAAGTATCGCTTGTTTTTTTCAAGCGCGCACTAC
ATTTTTATGACGTAATCTTTTTTCCAAGTAAAAAAGATTACAGCTTAAAA
GTGCGATCGCAGCGCGCGCAAGTGGAGATCGGCCTTTACGCCTCAATTAA
AGTGCAGTGAGTCTTGCTAGGGAAGTCTCTTGCTCACCTTTCGTTTCACA
ACAATCGAAGGTTCGCCATTCAAGTAATTTTGCTTTCTTTTTCCATATCT
TTAGTACAATCGAACATTTGTTACCATTATTTCTAACCATGCTTAAAGAC
GAGGTAAGGTTTCTTGTTATGTGTACGACTAGTTTATTGTTTAAATCTGC
GTTGCTACATTTAAGTGTGTAGTTCCAAATTTAAATCTGTTCCAAAAGCT
TCTTAAACCTTTAAAATGAGCCGTTTCCAGTTTTTTCTGCCATTTTGGCT
TTATCAAACCCCAACTAATATTAACTTGGTTCCTGTCTAGGATAATAGCG
AGTTTATGTATTCGAGATAAAGTGAGGGGGTGGTATAAAGCAAAGTTGAT
ATGTCTCTAAAATCACCGTCCACTTTGCTCGACGACGGTAAAAACACCAA
AATACCGTCGTCTGTTTAGGTGATATAGAGCCGTACATCAACTATCGACT
TTGTTTTGTGTCGATCTCACTTACCGTCGCCTTCGATATCCTCCGATATG
TAAACTCGGTAATGTCTTTAATTGCTGGGGTTACTGAATGAAGGAATAGC
CAGGCATAGTCAAGTTTTTAAGCAGACAGTCCAATTTCAACATCAACTGT
GCATTTTTCTTCAGTTCCCAGATGTCAGACTGAATATCATTTCCAATATT
GATAGTGTAAATAAAGGTGAGATTCGTCTATTTGTCATCATGTGTTATTA
TTGTTTGGTCTTTCATGTATGAGCCTCAAAGAATTGTTCTCTTGACTCCT
AGATTAACTTAGGTGTCTCGTTTCCCCTGGCCCATCCTTGAGTCTTTAAA
GTGATAACCAGATGGCTTGGGATTTTTGGCATTACGAAACCATCTGTGTT
CATTAGTAAACCCTATGTTGTTCTTTTTCTTGCTAAAAGTCGAATGATTT
TCTGCTTCGGAAAAAGGTTTGGTAAAGAGATACAACCTAGAACTCTCAAA
CTTTCTGATTTTGAGGTCAACCAATCATCGAATGTTTTCAAGAAGCACTG
GACAGAGTTGACTATACAGCCCACATACATGTGTTTTTTTATAAGCATAA
CGCTTATAAGCATATGAACGCTCAGATTTGCAGAATTCCTAAGCATAGCA
TAAGCATATATGTCAGCCTTCAATATTTTTCAAGTGGTCATTTTTTATCT
GTTTGAATAGGTTTGGTAGAGGTCAAGTAGAAAAAGACATTCCACGGGCT
AGCTGCATATTCCATTGCTCCCAAAATCTGAACAAATTTTTACAAAATTT
CTGACATTTCACTAAAAATTTGGCTCGGGTGAATCATAAGCATGATTCAT
AAGCATATAATAAGCATAAGCTATGCCTGGATGCTTTGAGAACTTAAGCA
TACACGAGCCTGACCAAGGGGCATACTCTTGCTTATAAAAAAAAACAAAG
GAAAATATCTAGGTAACTACTTGGAAGTCTCTTTTTGCTGATGAGATTAT
TTACAACCACAAAATGTGACCACTTTCATCTTATTTCAGTAATTGGCATC
CATCAATTATCACAATCTTTGTTACCTGCCATTATGGAATTGGCCGAAGA
TCCAAAATGGCGCGTCCGACTCGCTATCATCGAATATATGCCTCTCCTTG
CCGGACAACTGGTGGGTCTTCTTTTCCGCTTATTTTCTGCTTGATTTTCC
CCCAATTTACAATGAACACTAAGACAATTATCAGACCCGAATCATACTTG
ATTTTCCCACTCGCATTGGACTTCANTGCTTCTTTTCTGCTTGATTTTCC
CCCAATTTACAATGAACGCTAGGACAACAATCAGAACTGGATCATACTTG
ATTTGCCGAATTAGATTCCAAAGCAATTATGAGCCAATCTTAAACCTAAC
CTGACCATCTAACAAGAATCTTGATATGCCCTTTATTCTTTAGGGTGTCC
AATTTTTCGATGAGAAGTTGAATCAATTGTGTATGAGCTGGTTGGTTGAT
CACGGTAAGTCCTTTCCAAAGTCAATTCCTCTGTCTATTTGTGAACCTCA
AAACGATTAAAGGCTCTTCTTGACGCTTTCCATTTCCCTTTCATATTTAA
TGCTTTGTAATCTCTTCAACCAGACCGTTCTTGATATGATTGTAGCTGGA
TGGATGGTTTATTAATAGAGATTTGCATATGGTACGTTAGTATTCGGGGA
ATTTTTATAATGCAATTATTAATTCTCACTGAACGACTGAATCGCTGAAA
AAACTTAACCTCTTATAATCGTTTTTCAAATCTCTTCACTCAATCCTATC
TACATGTTTTTGTTATCGTATAGTTTATGCAATCCGTGAAGCAGCTGCAA
TCAACTTGAAAAAACTGATCGAGAAATTCGGTTTGGAATGGGCTCAAGTA
AGAATCGTAATATCATTTTTAATTTTTTTATAACTGGCGACCTCTTGTCA
TTTAGTATGAGAAGCAACCAAGTTAAGATTTGTCCTATGACTCAAGCTTG
CCTGAACAAGTATTACAAAAGTAACAAAAGACGATGACGCTGTTTTGAAG
TGCAAGTTAAAAGGTCATTAAGAGAGGATATTATGAAGATTACATTTCCT
CAAAACAAAAGTCAAATTAATGAATTCTTAAGCAATATCATTAAGGAGTT
AATGACTTTTATCGTTAATTGCTTCTGTTTGTTGTACTTCTCGTTACTTC
CCTTACTCCTTCACAACATTCTGTGTTTTCGTCATACGTCAAATTGCTTT
CTCTACCTGTTTCCGCTCGCTCGTCCAACCACTTAGACAATGTTTGGACA
AGACTATTGCATATGCCAAAACATATTGCTTATTTTATAAGCATTCAAAT
TGAAATTGAGATCAAGAGCAAACAAAGCAATAAATAACTTTCCCTTTCAC
CTAAAATAACCTTCCTTCTGNAAATTGAAATTGAGATCAATAGCAAACAA
AGCAATAAATAACTTTCCCTTTCACCTAAAATAACCTTCCTTCTGACACC
CCTCTCATAAAAATGTAATGTCAGAATTGATGGAAAATTCCTTCCCTCTC
GTTTCAGAACACAGTCATTCCTAAAGTACTTGCCATGGCAAAAGACACTA
ACTACCTTCACCGCATGACCACCCTCTTCACCATCAACACCATGTTAGAT
GTGGCGGGACCTGAAATCACCGCCCAATTCATCCTCCCAACCGTTGTCGG
TCTCGCCAAAGATAATGTCGCTAACGTCCGCTTCAATGTGGCCAAAACTC
TACAAAAGATCGCCACTATACTCGACCCAAAGTACGAATCTACTGCTACT
TTGACATTTTCTTAAACGAGGTTTTGTAAATGTAAACCTTGTGTGCTGAA
AATTTAGGCCTTCATATTTAAAGTGCTAGAGCATGGTATAATTTTTTTTG
CTTTAATCAAGTCATCGAATGTTTGTTAATTCCACTGCATTATTTCTTTT
AGTTCGATCCAGGGGACAATCAAACCATGCTTAAACCAATTGAATACTGA
TATTGATGTCGACGTCAAATATTTCGCCGGTGAAGCTTTATTAGGTAAGA
CAGGCCCATAGTATTGTGTTTGTTTGAACCAACTTGGTTTAAAGCTTATT
TGGGAGATTTCGCTCTATACTGTGTTTGTCTGCACTTCTTTTGGAAAAAT
TAACGTCAACGATTTTGAGCCATGACAGTCACGAGCTTTGCGAATAAAAT
TGGTCTACACGTTTTATTCTTGTAAGAATATCAAAAATTTTTGAAGCATT
TGGATGTTCTTAACTTTTTGAGTTTTAAGTCTAAAAATATTCTCAACATG
TTCTTATTTTCACTATTTTTTGAGAATTTTTGTCCATTTTCCTAAGAAAT
CAGGTGTTTTAGGGTCCGCAAAGCCTTAAAATGTTCTTAACTTGTTCTTA
ACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAT
AAACGTGTATTATACGTTTTTTTGTCAGCATCCGTTCTGCTCGCAATAGA
AACTATTTGAAGATTTTTTGTGACAATTTTTCACTTCTTTGAATCATTTT
GAATCATTTTGCTTCAGTGTGTGAAAGTGAAACTAGCTAAAAGTTGCAGA
ATTTTGTTTTGGATTTTCCTGTTGCTACCTGACCCCTCTCTCCTCTCAGT
GAAGAGGCTTTTTTAATTATAAGATATTTTGTTTTCTTTTGTAGTTTGTT
GATTCACAAGAATGGTGCTTCAATTCAATCCAGTGCAAATATTTGCAAGG
CTCTATTCACATCTCGACGAAAGATAATAATTTATGAACTGAATACACGA
ACGAAACCAGACGCCTCTTTTCTTTTCGAGGAAATGTTTTATTCAATTCA
AATTCAAATGGAATGAAAGATGTTTTAAAAATTCACGAATCAAAAAATAT
GGCTTAGCTTAGCTTGTTGGTGAATCGTTTTTCATATCGTAAAAAATAAA
AAACTTTCATCTTTTTTATGTTGCTCTGCTCCAAACTTACAGACAGGCAG
ACAGACAAAATTATTTGTAAATTATAGAAAATTCTCTTCAACGATTATGA
ACTTATTGTAAATGGCGTTTTTGTTGTTTTTTTCGGATCGGAAAAGGAAA
ATTAACTAATTCTTCTTTCTACTACTAATTTTTCTTTTAAAAATATAACT
TCATGTGATCAAAATGACATATTCTACATAAATGTAAAATAGGATGTTTT
CAGCTCCAAGAGATTGTGGTGAGAATAATCGAGTACACACTTCACGAAAT
GATCTCTTTTGTTGTTTATGTCCCTTAAAGTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002967XLOC_002967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005221-exon-sc0000051-1575043694:531255..531347TCONS_00005221-exon-sc0000051-1575043694:531255..531347Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:530993..531059TCONS_00005221-exon-sc0000051-1575043694:530993..531059Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:530332..530683TCONS_00005221-exon-sc0000051-1575043694:530332..530683Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:527281..527351TCONS_00005221-exon-sc0000051-1575043694:527281..527351Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:527010..527095TCONS_00005221-exon-sc0000051-1575043694:527010..527095Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:525245..525293TCONS_00005221-exon-sc0000051-1575043694:525245..525293Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:524682..524733TCONS_00005221-exon-sc0000051-1575043694:524682..524733Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:523737..523858TCONS_00005221-exon-sc0000051-1575043694:523737..523858Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:523394..523454TCONS_00005221-exon-sc0000051-1575043694:523394..523454Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:523001..523074TCONS_00005221-exon-sc0000051-1575043694:523001..523074Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:522117..522340TCONS_00005221-exon-sc0000051-1575043694:522117..522340Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:521854..521945TCONS_00005221-exon-sc0000051-1575043694:521854..521945Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1575043694:520613..521203TCONS_00005221-exon-sc0000051-1575043694:520613..521203Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:531255..531347TCONS_00005221-exon-sc0000051-1510915933:531255..531347Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:530993..531059TCONS_00005221-exon-sc0000051-1510915933:530993..531059Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:530332..530683TCONS_00005221-exon-sc0000051-1510915933:530332..530683Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:527281..527351TCONS_00005221-exon-sc0000051-1510915933:527281..527351Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:527010..527095TCONS_00005221-exon-sc0000051-1510915933:527010..527095Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:525245..525293TCONS_00005221-exon-sc0000051-1510915933:525245..525293Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:524682..524733TCONS_00005221-exon-sc0000051-1510915933:524682..524733Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:523737..523858TCONS_00005221-exon-sc0000051-1510915933:523737..523858Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:523394..523454TCONS_00005221-exon-sc0000051-1510915933:523394..523454Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:523001..523074TCONS_00005221-exon-sc0000051-1510915933:523001..523074Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:522117..522340TCONS_00005221-exon-sc0000051-1510915933:522117..522340Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:521854..521945TCONS_00005221-exon-sc0000051-1510915933:521854..521945Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1510915933:520613..521203TCONS_00005221-exon-sc0000051-1510915933:520613..521203Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:531255..531347TCONS_00005221-exon-sc0000051-1491911889:531255..531347Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:530993..531059TCONS_00005221-exon-sc0000051-1491911889:530993..531059Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:530332..530683TCONS_00005221-exon-sc0000051-1491911889:530332..530683Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:527281..527351TCONS_00005221-exon-sc0000051-1491911889:527281..527351Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:527010..527095TCONS_00005221-exon-sc0000051-1491911889:527010..527095Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:525245..525293TCONS_00005221-exon-sc0000051-1491911889:525245..525293Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:524682..524733TCONS_00005221-exon-sc0000051-1491911889:524682..524733Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:523737..523858TCONS_00005221-exon-sc0000051-1491911889:523737..523858Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:523394..523454TCONS_00005221-exon-sc0000051-1491911889:523394..523454Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:523001..523074TCONS_00005221-exon-sc0000051-1491911889:523001..523074Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:522117..522340TCONS_00005221-exon-sc0000051-1491911889:522117..522340Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:521854..521945TCONS_00005221-exon-sc0000051-1491911889:521854..521945Clytia hemisphaericaexon
TCONS_00005221-exon-sc0000051-1491911889:520613..521203TCONS_00005221-exon-sc0000051-1491911889:520613..521203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:520613..531347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8282	3.17723e-05	5.70029	23.1835	21.0341	17.5884	18.8588	21.5212	22.7299	24.3607	23.2742	17.4599	25.2493	23.0814	0.411235	1.14188	0.272867	0.570261	0.662906	1.43043	0	2.06504	13.2093	1.33284	38.7193	40.1571	6.91138	2.99955	0.80805	0.0126762
Blast
[Close]
BLAST of TCONS_00005221 vs. Swiss-Prot (Human)
Match: 2AAA (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4)

HSP 1 Score: 671.774 bits (1732), Expect = 0.000e+0
Identity = 318/448 (70.98%), Postives = 374/448 (83.48%), Query Frame = 2 
Query:    2 GDWFTTKTSACGLFASCYARVNNTIKADLRSAFKTLCCDETPMVRRAATGKLGEFAKTVEIDNLKADIIPSFQSLAVDDHDSVRLLAVEACVSIAGILPDSDKEALIMPTLRNVAQDKSWRVRYMVADKIVDLQKALGPELSKVDLVPAYFQLLKDVESEVKTAAAHKVKEFCEGLPDDIKEQAIMSNILPCVKDLVIDPNMHVKSALAGVIMGLAPMLGKDNTIEHLLPLFLTMLKDEFPDVRLNIISNIDSVNKVIGIHQLSQSLLPAIMELAEDPKWRVRLAIIEYMPLLAGQLGVQFFDEKLNQLCMSWLVDHVYAIREAAAINLKKLIEKFGLEWAQNTVIPKVLAMAKDTNYLHRMTTLFTINTMLDVAGPEITAQFILPTVVGLAKDNVANVRFNVAKTLQKIATILDPNSIQGTIKPCLNQLNTDIDVDVKYFAGEALLV 1345
            GDWFT++TSACGLF+ CY RV++ +KA+LR  F+ LC D+TPMVRRAA  KLGEFAK +E+DN+K++IIP F +LA D+ DSVRLLAVEACV+IA +LP  D EAL+MPTLR  A+DKSWRVRYMVADK  +LQKA+GPE++K DLVPA+  L+KD E+EV+ AA+HKVKEFCE L  D +E  IMS ILPC+K+LV D N HVKSALA VIMGL+P+LGKDNTIEHLLPLFL  LKDE P+VRLNIISN+D VN+VIGI QLSQSLLPAI+ELAED KWRVRLAIIEYMPLLAGQLGV+FFDEKLN LCM+WLVDHVYAIREAA  NLKKL+EKFG EWA  T+IPKVLAM+ D NYLHRMTTLF IN + +V G +IT + +LPTV+ +A D VANVRFNVAK+LQKI  ILD +++Q  +KP L +L  D DVDVKYFA EAL V
Sbjct:  138 GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 585
The following BLAST results are available for this feature:
BLAST of TCONS_00005221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
2AAA0.000e+070.98Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
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