TCONS_00005212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005212
Unique NameTCONS_00005212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005212 ID=TCONS_00005212|Name=TCONS_00005212|organism=Clytia hemisphaerica|type=transcript|length=146bp
GAAAGTGTTTCTTATCGAGCGACTGGATTTCAAAATAATGAAGTTACTGA
CAGTGCATTGATTCAACTGGACAAATTAGGGTTATCCACAACAACTCAAA
CTAAACCAACCGCATGCCCAAACACGAAGCAAGCTTTAGAATCAGG
Run BLAST on NCBI

transcript from alignment at sc0000051:445579..449069-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005212 ID=TCONS_00005212|Name=TCONS_00005212|organism=Clytia hemisphaerica|type=transcript|length=3491bp|location=Sequence derived from alignment at sc0000051:445579..449069- (Clytia hemisphaerica)
GAAAGTGTTTCTTATCGAGCGACTGGATTTCAAAATAATGAAGTTACTGA
CAGTGCATTGATTCAACTGGACAAATGTAAGTTCCACTGTTTTGAAAATC
TTATAAACCATTATGTGCTCCTCATAGTGAGTGGTCAGTCTTGCTCTTTG
TAAAAATTGACTTTGACGGCTTTTTCTATCACAGCTATAGATAACTCCTA
ATAAAAGAGTTTGAATGGGGGGAGGGTGATAAAACTGTACTTCAAATAAA
TGTGTATATCATTTTTAAACAACATTGAGTGCCTATAAAGGTCAAAGTCC
TTTTCCCTTTCATTTTTTTTAAAGTCGATATTTCGAATGTCTGATTTATC
ATCTATCAGTGAAGTTTATTATATATATGTTTTTTTCTGTGCAGATGACA
TTTCGAATGTAATATTCATTCAAGACGGCCCATGTCCAATTTTGACATGG
AATGCTGATGACCATGGATTATGTGAAGTGGATTTGTTTCTGTCTTTTGC
ACAGAAAAACAGCATCCCGAGAAATATTATTTTTTTTTTTTTTTTTTTTN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTGGGTCTGAGGAATTGGAGAATTGCTT
GCTTAAAAGACTTAATAGTTGGAAGATTCCGTATATGATCTCCGAGGTTA
TTCCATTCATTTATGCAAAAAGGAATTATTGTTCCCGTTGGCAACCAAAC
TTTTCAAAATTGCTATTACACTACAAATGCATCGATGGATGGTGTAAGCT
ATCAGACAAATGTCTACCTGAAAACATTAAACGGTAATAGAACTCAAACA
AGCTATAATGGGCAATTGACAACTGTCGGGCTCATGACAACAACAACAAC
AACAACAACCACGACCACACCGACTACAACGGGTACCAATCATTTCATTT
GCATGAATAACTCTTATTAATGTGTCTAAATTCGTTTTGTAGTACTAATG
ATAAGTACTACTAATGGTAAGTGTTTCCAATTTTCAATTGATATCTATTG
ATGTTTCTCAGGTAAAACAGAAGAAATGAAGCGACTGCTTTTAAGGGCTC
TGACCATAGTCAGAAAATTAGGTTTTAAGTGATTTGAAGAAATAACTTCT
GTTTTGGATTCCTTAATACTCTTAACAAAAAATTGCCTTTATACAAATTT
AATCACAAAAAGACGTTATAAACTTTAAAACGACGTTAGTAAAACTATTA
CAAAAGTGCTAAAAAAATATGCTGACAATAGGGTCTTCAAAGTTGCAATA
CTCTTCTTTGCAAAAGTCTTCATTTTCTTCTTCATTAAACTTTTTCAGAT
TCAGAAATAATAGCCCTAACAGAATATGTATAACATGTCATAGTTTTGTT
GGCTATGTGTTCTGAGAGCATATTTTAGCTAGAAATTTGATCTGTTCTGA
TCAGATCTTCGAAATTAATCAGCTAGTAACAATGATGTGTTCTGACGAGA
CAGAGGTATAATCAAGGGCATCTAAGGTGTTCTTGTTGCCTAGTAACCCT
AGAAAGCTTCAGAACACATCATTTAAGGAGACAGGGGTATAATCAAGGGA
TAATTGATGTAATCTTGTGCTTAGCAACCCTAGAAATTTTCAGAACACGT
CTTTCGTGGAGAAAAACAAATATACTATATTACAAGTTTATCTTGGCAAA
CTGTTTTTCTTAGATTTCAGAACACATCAATCCATAAAGTAGTCAGGCAA
ATAGGGCGATAAAGGTTTCCTAGAAATCAGAACACATCATTTGTATAGAA
AATTAAAAGGTCATAACATTTGGTCTCCTAGAAGAAAAGAACACGTATTT
CTAAAAAATCTCTCCGCTAGCTGCTTCTGAATACAGTATTTCACAGAGCC
ATTAAGGGCTCTGACCATAGTGAATATTTAATATTTGCCACGTACAAAAT
ATGAATTTCTACTTGATGTAGCCCACAAAAATGTGGCACGTTATACATTT
TCTGTTAGGCCAATGATCCTTGAGTCTGAAAATTTAAGAATTGCAATGAT
AGAATTTGATGAAGAAGAAAATGAAGACTTTCACGAAGAAGAGTATTTCA
ACTTTGAAAAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAATTTTTG
TTCGGTAGATGGTGTATCTTTTATCGAACTAAAATAAACTTTTCGGAAAA
TTTTTCTGAAAGCTTATTTGCTTCAAAATTTTGAAAATAGTGCTTTTTGA
CCAATTTTCCATCCCAATTTTTCATAGAAAAACAGCCATAATTTTTGATG
TATTAACTTAGAAAATTTTTCCGAAAAATTTAAAACAGTTTAATTCTTTG
CGGACAGTTTGAAATAACTTCGAAACAAAAAAGTTAATTACCCATTAAAG
CTTAGCACTTTTTATAAAAGAAGGTGATGCAACCTATTATTAACGTCTTT
TTAAAGTTCATAACGTCATTTTTGCAATTAAATTCTTAATTACTCTTAAG
GGATTTGATTAAAAAGCAATTTATAAAGGCAAATCCTTCTTAAAAGTTTT
AAAGAACCTAAAACATAACTTTATGTTCAAATTCTAAAATCGATTTTCCG
ACTATGGTCGGAACCTTGACCTAAAAAATCTAGTCTGCAAAAAAGTGAAG
TTGTCATGCCCCCGATGACAGGACCCATGTTTAGTGCCATAAAATATTAT
AAAAACCGTTTCTTTCACCAGTAGGGTTATCCACAACAACTCAAACTAAA
CCAACCGCATGCCCAAACACGAAGCAAGCTTTAGAATCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002961XLOC_002961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005212-exon-sc0000051-1575043694:448994..449069TCONS_00005212-exon-sc0000051-1575043694:448994..449069Clytia hemisphaericaexon
TCONS_00005212-exon-sc0000051-1575043694:445579..445648TCONS_00005212-exon-sc0000051-1575043694:445579..445648Clytia hemisphaericaexon
TCONS_00005212-exon-sc0000051-1510915933:448994..449069TCONS_00005212-exon-sc0000051-1510915933:448994..449069Clytia hemisphaericaexon
TCONS_00005212-exon-sc0000051-1510915933:445579..445648TCONS_00005212-exon-sc0000051-1510915933:445579..445648Clytia hemisphaericaexon
TCONS_00005212-exon-sc0000051-1491911889:448994..449069TCONS_00005212-exon-sc0000051-1491911889:448994..449069Clytia hemisphaericaexon
TCONS_00005212-exon-sc0000051-1491911889:445579..445648TCONS_00005212-exon-sc0000051-1491911889:445579..445648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:445579..449069 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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