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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005192 ID=TCONS_00005192|Name=TCONS_00005192|organism=Clytia hemisphaerica|type=transcript|length=347bp
ACCACGATTTCAAGACTCGCAACTTTCATTCCCAATCGACAGAATCAAAC
GGTATTTAGAGATTGCAACCACACGAGAATACCAGAGTGTGGAACAAAGA
GAACTTAGACGTTCCAAAAGGCATGTCTTGGAGCAAGTGCATCGCTGGCC
AAACAAACTCATACCATACCATATATGGACACAACCAGGAAAAGGATCAT
TTCAAGCTAACGGTGATTCTTACAACAAGATCAGAGAGGTGATGAAGAGC
ATTGAAGACGTCAGTTGTTTAAAGTTCAAGGAATTATCCTACCAACAAAT
CAATAAGATGGAAGAACAAAGTTACCTCAAAATATTCGCAGCACAAG Run BLAST on NCBI protein sequence of TCONS_00005192-protein >TCONS_00005192-protein ID=TCONS_00005192-protein|Name=TCONS_00005192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
PRFQDSQLSFPIDRIKRYLEIATTREYQSVEQRELRRSKRHVLEQVHRWP
NKLIPYHIWTQPGKGSFQANGDSYNKIREVMKSIEDVSCLKFKELSYQQI
NKMEEQSYLKIFAAQ Run BLAST on NCBI transcript from alignment at sc0000051:174433..175875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005192 ID=TCONS_00005192|Name=TCONS_00005192|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at sc0000051:174433..175875- (Clytia hemisphaerica)
ACCACGATTTCAAGACTCGCAACTTTCATTCCCAATCGACAGAATCAAAC
GGTATTTAGGTAAGAAAAGGTCTGACAGGTCAGCATTACACAAACCATTT
ATGGTTTGAATTCCCACTCGATCGAAAAGAAAAAGACTGTATAAAAGTCC
TAGGTTACTGGGCTATCCACGAAAAATATTAGCTGCTTTATAGAGAAAAC
TTTTCTCGGATGTTATAATCAGGGGAGACGACTTTGAACGATTTGGCCAT
ATTTATTAGAACATATTTGTGTTGATTCGTAAAAATTAAATTCTTTCAAA
ACACCCAGAGCTTTCTAATATTAAAACACTTGTCTTGACATAATTTTGGT
GTTCTATACACATTTAGCGCCAAAACTGCGTAAATAAAAATACGTCGAAA
TATGTAATTACAGGAAAGGAACAAATATTCTAAATGAGGAATAAGATGTA
TTTTTCGCGTCATAAAAATCATTAATTTTGCAGACCGGAAAATGTGGTTT
TGCATAATGTAAACAAACTTTCGTGCAAGGAATCACTAGCATCGCCATTC
ACATTAATTGAATGAGAAGAGACGGTTATGAGTTCCAAATTAAGAAAGTG
TTAACCATGCTAAGTCATCATGTGCAAAATCCTCAAACCCTAAAATATAT
ACAGGAAAATCCTGAAAATCAGGCTCCAATACATCCGAGTCAGCTTGAAA
ATGTGTGACAGTTATACAGTTATGCTTCAAACATTTAGGCACCATTCTAT
TGATAGAGATTCGAGCTCCTGTATAGAATCGGTCGAAAACCCTAGAGCCA
TCAATTTTTTGAGGTCAGCAATGGGTGGTCTAATATTGAATTACCAATCT
TTCTCAACATTTTAGAGATTGCAACCACACGAGAATACCAGAGTGTGGAA
CAAAGAGAACTTAGACGTTCCAAAAGGCATGTCTTGGAGCAAGTGCATCG
CTGGCCAAACAAACTCATACCATACCATATATGGACACAACCAGGAAAAG
GATCATTTCGTAAGTAATTGAAATGTCACTACGATTTTAGGAAATTTGTA
GTTCTATATGCTACTAAAGTTATCATGAGGTTGGGGGCGAGGTTGTGGAT
TTGGAATAACTATATGATTTAATGGGTATAATAGTCTCTGAGCTGTTTAG
GTAGTAAGGATGATCTCAGAACATATCTTCTCGAACAACCAAAGAACCTC
AAAACTGCCTAGTTATAATCGTTAGAACAACGAGTATATTTCATCCAGCC
ACCAACAGTCCTTGTTCACCACACAAATAATTCATTCTTTCTCATTCAGA
AGCTAACGGTGATTCTTACAACAAGATCAGAGAGGTGATGAAGAGCATTG
AAGACGTCAGTTGTTTAAAGTTCAAGGAATTATCCTACCAACAAATCAAT
AAGATGGAAGAACAAAGTTACCTCAAAATATTCGCAGCACAAG Coding sequence (CDS) from alignment at sc0000051:174433..175875- >TCONS_00005192 ID=TCONS_00005192|Name=TCONS_00005192|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000051:174433..175875- (Clytia hemisphaerica)
AAGCTAACGGTGATTCTTACAACAAGATCAGAGAGGTGATGAAGAGCATT
GAAGACGTCAGTTGTTTAAAGTTCAAGGAATTATCCTACCAACAAATCAA
TAAGATGGAAGAACAAAGTTACCTCAAAATATTCGCAGCACAAAGATTGC
AACCACACGAGAATACCAGAGTGTGGAACAAAGAGAACTTAGACGTTCCA
AAAGGCATGTCTTGGAGCAAGTGCATCGCTGGCCAAACAAACTCATACCA
TACCATATATGGACACAACCAGGAAAAGGATCATTTCCCACGATTTCAAG
ACTCGCAACTTTCATTCCCAATCGACAGAATCAAACGGTATTTAGAAGCT
AACGGTGATTCTTACAACAAGATCAGAGAGGTGATGAAGAGCATTGAAGA
CGTCAGTTGTTTAAAGTTCAAGGAATTATCCTACCAACAAATCAATAAGA
TGGAAGAACAAAGTTACCTCAAAATATTCGCAGCACAAAGATTGCAACCA
CACGAGAATACCAGAGTGTGGAACAAAGAGAACTTAGACGTTCCAAAAGG
CATGTCTTGGAGCAAGTGCATCGCTGGCCAAACAAACTCATACCATACCA
TATATGGACACAACCAGGAAAAGGATCATTTCCCACGATTTCAAGACTCG
CAACTTTCATTCCCAATCGACAGAATCAAACGGTATTTAGAAGCTAACGG
TGATTCTTACAACAAGATCAGAGAGGTGATGAAGAGCATTGAAGACGTCA
GTTGTTTAAAGTTCAAGGAATTATCCTACCAACAAATCAATAAGATGGAA
GAACAAAGTTACCTCAAAATATTCGCAGCACAAAGATTGCAACCACACGA
GAATACCAGAGTGTGGAACAAAGAGAACTTAGACGTTCCAAAAGGCATGT
CTTGGAGCAAGTGCATCGCTGGCCAAACAAACTCATACCATACCATATAT
GGACACAACCAGGAAAAGGATCATTTCCCACGATTTCAAGACTCGCAACT
TTCATTCCCAATCGACAGAATCAAACGGTATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005192-exon-sc0000051-1575043694:175817..175875 | TCONS_00005192-exon-sc0000051-1575043694:175817..175875 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1575043694:174867..175010 | TCONS_00005192-exon-sc0000051-1575043694:174867..175010 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1575043694:174433..174576 | TCONS_00005192-exon-sc0000051-1575043694:174433..174576 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1510915933:175817..175875 | TCONS_00005192-exon-sc0000051-1510915933:175817..175875 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1510915933:174867..175010 | TCONS_00005192-exon-sc0000051-1510915933:174867..175010 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1510915933:174433..174576 | TCONS_00005192-exon-sc0000051-1510915933:174433..174576 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1491911889:175817..175875 | TCONS_00005192-exon-sc0000051-1491911889:175817..175875 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1491911889:174867..175010 | TCONS_00005192-exon-sc0000051-1491911889:174867..175010 | Clytia hemisphaerica | exon |
| TCONS_00005192-exon-sc0000051-1491911889:174433..174576 | TCONS_00005192-exon-sc0000051-1491911889:174433..174576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:174433..175875 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024079 | MetalloPept_cat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008237 | metallopeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
The following BLAST results are available for this feature:
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