TCONS_00005183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005183
Unique NameTCONS_00005183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005183 ID=TCONS_00005183|Name=TCONS_00005183|organism=Clytia hemisphaerica|type=transcript|length=1742bp
tcttaaaataaacgATAATTTTAGATGCTTATAAATAGCAGGAAGATAAT
TACTTTATTGTTTATTTGACAATAAGTGATCATGCAGTTCCTAATTTATA
TTAATTGTTCATGATATCATTGAGAGAAGTATTACAATttagttttttga
atgtttattaGAGCTTGTGTTACTACTCCTCATTGAAATGTGCGCCAAAG
GTTTTGGCTTTTATTTGAAGTTCTTGACTGGCAATCGAGAAGAATTTTAT
TCGAGTTATTATCGATTGAAGCTCAAAAGTCGAAGAGatttGCACCAAGC
TGTGTTATCAAAAGAAGAGATGACGGTTTTCCAAGTCAGTGGTGCTCTTC
AATCGCACGAGAGTTACATCCGCATCATGACAGCCATCAATCATGCCGGA
CTTGAGCTCTACTTCAAAGCGTTCCATCACAGGGACGAACTACCCGGTGG
TCTTGGTCTTCCAACAGAACCGGAAAAACTTTACAAGCATCTACAAAAAC
ATCAATCAGAATTTGACGACCTTCGCTCCAAAGGACAAATCACTGAAAGA
GAGTATCTAACCATTTTCCCAGCTGGCAAGAAAGAGACTTATTCTCAGGA
ATTCTCATTCCcgcttttccaaaaattgttACAAATGTTTGACCGAGCAG
GACTTGATGCGGAAACAGCAAACTCGGATGACGAGCGAAACGTATTTTTG
CAAGAAATGTCGAAATTTGAATACATATTGAAAGATAAGAAACTGGTCAA
AAAGATTAACAATTCTGATGAGACTTTCAATGAAATTTGGGATGACGTCA
TTCAGatcttgaaaaatgtcaaatatgatataacacgaatcgAATCCTTA
CGAACAAGCGATCTAgaagaaaataataaattccGATTCGCTCTCTTAAA
ATCCGAAGTCAACGCTTTATTGTGGGAATGTGATGATTGTTTCAAGACTG
TCAAAATGAACCATCTAGCCTTGGATCGCCTCAAAGGGAACTTCCAGGCT
GCACTCTCTGAAGTCAAAACAGAAAATAACAACGCTAAAACAGCTAACGA
GTTAAAAGAACTGAATACAGTCACAGATGAActtcaaaaatctgaaaata
aaatcatGGTTCAAAAACAACAGCTAAACGAAATTGTTCCAAAtattaaa
ttttggcgggaaaagAACATTGaaggtgacgtcatcatttgtgACGAGAA
CATTTCGAAATTGAGACATGAAGTAAATGAACAGACCAGACGAGTCGGTG
ATTTGTTCAACACCGTATCTTTCGATATCATTCACCTGAAGGAGCGAGCA
TACAGTGCGACTGGAGAAGCTAAAAACATCGGACTTCCTTTACATAAATC
GCATTGAGTTTTGCGActgtttcagatttttttttttgtacataTTATTA
AGGTCTATTATctttatatttattattttaatgcaagttttatttttaat
ttgttctagGTCTTTCAATTGATTATTCCGAAATTGATGCTGAATATTTT
GGGAACTTTTTTGGATTGACCGGTTGAACCTTTAGTCTTTTGCTTTAttg
atttcagaaaaaaataaaagatagaGAATTTTGTATAGATTTCACTGGCG
TGTCATTTCATTGAGTTACTTTAAACAACACTTCTacgcgttttttttta
ttagaacctagtttataagaacatataggctgaaattcgtcgaaaaatta
agaacatcttaagaacatgcccagcctcagtttggaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000051:108262..114101-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005183 ID=TCONS_00005183|Name=TCONS_00005183|organism=Clytia hemisphaerica|type=transcript|length=5840bp|location=Sequence derived from alignment at sc0000051:108262..114101- (Clytia hemisphaerica)
TCTTAAAATAAACGATAATTTTAGATGCTTATAAATAGCAGGAAGATAAT
TACTTTATTGTTTATTTGACAATAAGTGATCATGCAGTTCCTAATTTATA
TTAATTGTTCATGATATCATTGAGAGAAGTATTACAATTTAGTTTTTTGA
ATGTTTATTAGAGCTTGTGTTACTACTCCTCATTGAAATGTGCGCCAAAG
GTTTTGGCTTTTATTTGAAGTTCTTGACTGGCAATCGAGAAGAATTTTAT
TCGAGTTATTATCGATTGAAGCTCAAAAGTCGAAGAGGTGAGAACGTGTC
TTGACTCTCGGACATTTCTTTGTACACTCACTTTTTAGTTTTACGATTAC
AAGATTTGTTAGAGAGCTTCAGAAGTATTCTGCAACAAGGAATAAAATAA
TTAACTTCGTCACCATTATACTGTAGAGGGGCTTCATGCTTTGTGTAGAA
TCTAGTGATTTATTCCATCCATTACAGAATCAATCACCAAAAAAGTATTT
GTTTCACAAATCATGGATCAGTAATTTTGTAGGGAGAGGAGGTGTTGACT
TTCCTTCTGTTTTGAATGCTACCGTAAGTTGGTCTAATGTCGACATCTGT
CTTCTAATTTCGACATCCTTCGTTGGAATCGCTGATTGAGACTAATTGTC
TTTGCTTAATGTTCAGAGAGGAAAAAATCTTTTGTCCATCAGTGATTCCA
ACCTTCCTATTATTCCTATCTCTAAGGATTAAGGGTGTCGAAATCAGAAG
ACAGATGTCGACATTTGACCAACTTACGGGTAGTAAATAAATTTTACCGG
CCATTCTCTAAATATTAGAGTCCAGTCTCCTTGAATGCGAGCATATGAAT
GTTTCAGTTTCACACAAATTCTCTTCTTACTCGAAAAAAAGCAAAAGAAC
AAATGAATAAAAGAAATTCTTGTCATCTTCCTTCTTCTCGGAAAGGAAAT
TCGATTTTTGAAAAAGCCTCTCTACGTTGAAGTGTACGGGAAAAGGAAGA
ACTGTATTCTTTTGTTTTGCTTGCTTGCACTCCACCCTACAGCTTCATTC
ATTGAAAACAATTTACGTTAATGCTTTTACGAATTACTTGAAACTTTCGG
CATGTTTTCTATACTCTCATTATTGCTCGAAAATATCGTCGTTCAAAAAA
ACAAACTTTGTCTTTTTATGATTCTTTGCCAAATAAAGTTGCCAAGAGTA
GTATAGACCAGGCTTCAAAGACTCTTGTTTGTTAAGCAAAAAAAACGTGT
TTGATTTACTTATTATAATGGCTAGGAAATCTTCAGGTAATAACATGAAA
CTAGTATTATACATGTTTTCGTATACTAATGAAAAATATCTGGTAAAAGT
CTTGTATTACAGTTTGGTGAAACTCTATCGTTTTACGAATTCATGTCTTT
CGTGGAAGTTTTGTGTTTCATTAGCTAGGAAAGAAATCTGTTGGTCACTG
AGTAGGGAAAATGCAAAAAACTCGGTATTCGCTGAGACGAGGTACAGTAA
CGATTTCGACTATCGACAGCTCTAACGAAGTTCCAGTGAGACTGGGAAGA
TTAAGACTATCCGAATGAACACTTTCACTATAATAACTATTATCTTTGAC
TCTTTTTTGAACCTTCAGTGCCTGCTTTTTAATGATTTTCCGACCCCTAG
TCCCTTCTAAAAACTAAACAAATATGCCCTCTTTGTATCCTTTGCTCTGA
GCTTAAAACTGTCTGTCTGTCTGTTTGAGCTTAAAAGTCTGGATCGTCGG
TAGAGATACTAATGCTTTCTAGCTTCAAATCACTGGATTAAAATGATCAA
TTTGACCTCCTTGGCTTAGAGTTGTGTGAACATACAAAACGATGAATTCG
TCTCTTGACCGTTGTGTTTTGAAGTACACGTTTTTTTTTTTATTAGAACA
CCTAAAATTTGGCTGAGCCTGGATGTGCTTATTTTTTTATCAATTTTCAG
CCTAGAATGTTCTTAAATGCGTTCTTAATTTTTCAGACTACTCTAAATCG
ACAATATGATACAAAATAAAGAGCACTTAAATTTGGCAAAATATTTGACT
CTCGACTTTTGAAGATCCACCCCTAAATTCAGTTAAAACTGCTTAAAAAG
AGGAAAAAATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCA
TGTTCTTAAGATGTTCTTAATTTTTCGACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTCCAAACTGAGGCTGGGCATGTTCTTAAGATGTTCTTAATTTTCGA
CGAATTTCAGCCTATATGTTCTTATAAACTAGGTTCTAATAAAAAAAAAA
ACGTGTAAATCTTTCAGATGCTGATTCAGCTTTATCAATGGTTGCCATAG
TAACACATTGATGACGTCATTATACAAGTTGATTTATGAGAGAATTTTAG
TTTAAATATTTATGGAGAATAGTATACAAAAAGTTTTTAATTCAATTCAA
AAATGAATTCAAAAATGTTTTTATTGTAGATTTGAGAGTACTAAAACGGT
TTTATTGAGGAAATCCACAACAGCTTCATAAAGAAGTTTGTATTTTTTGC
GTTTTGACTTTCCTGGCTTTTCGTGGAAGCACCTGAAAGATTTCGAGATA
GAGTCGTTTGCTGGGAGTGTTATATAGAATAATTGAGAGCGAAGCATCGA
GGGTATGTTCACATCTTGTTCTCAATACTTTTGGTAATCTTTCAGTAAAG
ATAGTACTGTACACTACAAAATACAAATTCAATGTGCATAGATGATTTAT
AAAAGGCCCCAGTACCAAATTACCTCATCTTCAGTAATTTTTATTCGTCC
TCCCAATATACTTCTTCCCTTTGGAAATGTGAAAATAACAAATATCAGTT
GATTGGTCATTTCTATAGAAGTATATTGCGCTCTTGATGATATCGTGTTG
TTATGAATGAACTGTTCTAAGCACATCCCATTTCGACTATCTTCTAGTAT
TTTCTCCCTCCTCCCTCTTTGACTGTAAGAACAAAATTTTTTCTGTTCAA
TATAATCAAGACTTTCATTGACAAGGTTCAGTTGGTTGTATGTGGTGATT
AGTACACGTTTTTTTTATAATAGAGCAAACTATACGAGAACATAAGGCTT
TGTGGACTCAAAAACACCCGTTTTCTGAGCAAAATGGGTAAAAATGGTTA
CGAAATGGTGATTTTAAGAACATTTTTAGGCTTGAAACCCAAAAAGTCAA
GAACATCCCAAAGCTTTAAAAAAACGTGTATTCCATGTCGAGTTGTATAA
GTCCATTTATTCGAATATTTGTTACTTTTATTTTGGCAAACGAATATAAA
TGTAAGAAACAAAAGATATCACAGTTTCTTATAAAAAACTTTCTTTGTAT
GTATATCCCACTTTCTTGTATAAACAGGACAATACTTCAAAGTTAATTAC
TTCCACCTTCGAAATAACTGAAATCAGCATTCTAAAAAACCTAATTGTCA
ATTATACGTATATCGTTTTCATTAACAAAATTAACAGCATAAACGAGGCT
ATTACAAACTGACGTATTTGTAAACTTTTTTAATCTCTACCAATTTTGAA
CAGAGCAGTTCATATCATCAATCTTAAGTCGGCGTGTGAGAGAAAGTTGA
TGTCAAAATCTTTATTGGATTTTTGTTGTAAATCAGTTCAAGGCTTCACT
CACTGTGCTGAATTTTTGTTATGTTTTGAAATCAAGAGAAAGAGAAAGTT
ATTTCATGCTGAAAACTTGCTAAGAAACAGGAAAAGTTTTGCTGGTTATG
TCAAAATTGCACTTTCCATTTAAGTTATGGTAATTGAAAGTTGTTGATGT
CATTTTAAATTCCTGGAAGAAAGAAATTTGGTGATACCCACAATAAGTGT
TGTATTTTTGTCAGTAAGGTCAATACGTTGTTTTTTGTTTTCGGTGGTGG
AACGGTAGTTTAGTTTTGATGAGAAAAGTTGTGTACTTGACCTCTGTAAA
TCCTTAAGGTGAGGTGTTTGGTACAAGCTCAATCAATATTTTTAAATTTC
TTCCTTCGCTTTTATTCCTTTAAGAGATAAATAACTCCTCTTGTATTATA
CATTTGGGAAGTAAGCAATTCGATACATACACCCTGTAAGGGGTTATAAC
GTTGTAAAACTCGAGCCTCTTCATGTCCATATTAAAGGAGTCGAATTATG
GAAGATTTGCCGAATGATACTCTATAATTCGAACTTGAACGGGATATCTT
ATTTGTTCGAATTACAGAGATATTCGGATAGTAGAAAGTTTCTCCTTGTG
TCTGGGACTGGGACATAAGTTCGAATAAGGGAGTCTACTGTCTACTGTAT
AAAAATGTCAAATTTTGTTGCTTTTTATTTTGTAGATTTGCACCAAGCTG
TGTTATCAAAAGAAGAGATGACGGTTTTCCAAGTCAGTGGTGCTCTTCAA
TCGCACGAGAGTTACATCCGCATCATGACAGCCATCAATCATGCCGGACT
TGAGCTCTACTTCAAAGCGTTCCATCACAGGGACGAACTACCCGGTGGTC
TTGGTCTTCCAACAGAACCGGAAAAACTTTACAAGCATCTACAAAAACAT
CAATCAGAATTTGACGACCTTCGCTCCAAAGGACAAATCACTGAAAGAGA
GTATCTAACCATTTTCCCAGCTGGCAAGAAAGAGACTTATTCTCAGGAAT
TCTCATTCCCGCTTTTCCAAAAATTGTTACAAATGTTTGACCGAGCAGGA
CTTGATGCGGAAACAGCAAACTCGGATGACGAGCGAAACGTATTTTTGCA
AGAAATGTCGAAATTTGAATACATATTGAAAGATAAGAAACTGGTCAAAA
AGATTAACAATTCTGATGAGACTTTCAATGAAATTTGGGATGACGTCATT
CAGATCTTGAAAAATGTCAAATATGATATAACACGAATCGAATCCTTACG
AACAAGCGATCTAGAAGAAAATAATAAATTCCGATTCGCTCTCTTAAAAT
CCGAAGTCAACGCTTTATTGTGGGAATGTGATGATTGTTTCAAGACTGTC
AAAATGAACCATCTAGCCTTGGATCGCCTCAAAGGGAACTTCCAGGCTGC
ACTCTCTGAAGTCAAAACAGAAAATAACAACGCTAAAACAGCTAACGAGT
TAAAAGAACTGAATACAGTCACAGATGAACTTCAAAAATCTGAAAATAAA
ATCATGGTTCAAAAACAACAGCTAAACGAAATTGTTCCAAATATTAAATT
TTGGCGGGAAAAGAACATTGAAGGTGACGTCATCATTTGTGACGAGAACA
TTTCGAAATTGAGACATGAAGTAAATGAACAGACCAGACGAGTCGGTGAT
TTGTTCAACACCGTATCTTTCGATATCATTCACCTGAAGGAGCGAGCATA
CAGTGCGACTGGAGAAGCTAAAAACATCGGACTTCCTTTACATAAATCGC
ATTGAGTTTTGCGACTGTTTCAGATTTTTTTTTTTGTACATATTATTAAG
GTCTATTATCTTTATATTTATTATTTTAATGCAAGTTTTATTTTTAATTT
GTTCTAGGTCTTTCAATTGATTATTCCGAAATTGATGCTGAATATTTTGG
GAACTTTTTTGGATTGACCGGTTGAACCTTTAGTCTTTTGCTTTATTGAT
TTCAGAAAAAAATAAAAGATAGAGAATTTTGTATAGATTTCACTGGCGTG
TCATTTCATTGAGTTACTTTAAACAACACTTCTACGCGTTTTTTTTTATT
AGAACCTAGTTTATAAGAACATATAGGCTGAAATTCGTCGAAAAATTAAG
AACATCTTAAGAACATGCCCAGCCTCAGTTTGGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002949XLOC_002949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005183-exon-sc0000051-1575043694:113815..114101TCONS_00005183-exon-sc0000051-1575043694:113815..114101Clytia hemisphaericaexon
TCONS_00005183-exon-sc0000051-1575043694:108262..109716TCONS_00005183-exon-sc0000051-1575043694:108262..109716Clytia hemisphaericaexon
TCONS_00005183-exon-sc0000051-1510915933:113815..114101TCONS_00005183-exon-sc0000051-1510915933:113815..114101Clytia hemisphaericaexon
TCONS_00005183-exon-sc0000051-1510915933:108262..109716TCONS_00005183-exon-sc0000051-1510915933:108262..109716Clytia hemisphaericaexon
TCONS_00005183-exon-sc0000051-1491911889:113815..114101TCONS_00005183-exon-sc0000051-1491911889:113815..114101Clytia hemisphaericaexon
TCONS_00005183-exon-sc0000051-1491911889:108262..109716TCONS_00005183-exon-sc0000051-1491911889:108262..109716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:108262..114101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1011	8.633	12.8915	9.19654	2.29343	0.571428	3.14789	1.36627	3.41771	3.70258	1.55733	3.88881	10.2625	8.03793	9.19432	4.80699	2.61635	3.14482	4.57373	6.9696	0.53811	1.23591	21.3361	21.2029	3.04719	2.02136	10.0913	8.67299	14.8023	20.7055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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