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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005171 ID=TCONS_00005171|Name=TCONS_00005171|organism=Clytia hemisphaerica|type=transcript|length=1990bp ctGTCTGTCTCAAGTAGACTAGCAAAAGTCTAGCGCAACCTATGGCATTt gttcaaatttaatatttatataatTCATGATTTCTTGTATTTGTGTCTCG TGGGGCTCATGGCACACCTTTCTCTCACCTTTCTGTGATGCCTGACAGAG AATCTTtgacttttatcaaaaatttccaacGACACTAATAATTGAAACCT TACATATTTtagtataaaaaaaataatggcTGACATCCCCTCAGATGCGG TTAtaaagaaatggaaaaacaaaCGGTGGTGGATGACACTGCTCACAACA ATTCAAAGCAGTTTACAATTTTTTGAGTACTCTGTTTTCCAAATCACAGc tttattttactttaaaaagaatttcgaCTTAGAAAATCCACGATTATTTT ACAGTATCTCAATGGGGATTATCTTCGCTTCAGGACTTGTCagCTCAGTG ATTTGTGGACATTACATGGATCGGACAAGAGACCTGCGATCAATCTTCAT CTTCACTTTAACACTGAACGTTCTTGGCAATCTGATGTATACATGGACGA TATCACCTTATTTTCCTGTGTTTGGGCGTTTCTTAACAGGCTTTGTATGT GGAGTACCTACTGCCGCAACAGggGAATTTTCGCGTGTTTACAGACAAGA CCAATTAGTTGGTGTTTTATCTCGCTACACAATCATTTCAACGGCAGCAA ACACACTTGGTCCTTGCAGCGCACCTTTATTTCATGGTGTGGATATCAAA CTAGGTTGGTGGCATTTAACTCAATATAATTTCATTGGGCTTGTCTTGGC AATCCTTGCACTCTTAACAACGATAGTCGGCTATTtcaaattgagtaatt taacgAGGGAACCCGTTTACGATAGAATTAAAGGAGAGTTTACAGAGGGT TTCATGCAAAATGAACCTTCCTCCGATGATGGGAAAGAATCTAAGAGGAG AGAAAAGGAAACTGATCATAAGGACCATGAAAATGTTACAACGAGAGATA CACAGCGCGAAGACGGTGATCAGATTAACAAATGTACTGAGAGCAAAACG AAACTGATATCTTTGAAAGCAATATTGCGTGATCGTGAGGTGATCACTTT ATTGATTGGTGAGTTATTTTTATCGTATCAAAGCCAAACTGAGATGTTGA CCAACATGGTTGCAGTGTTCGTGTTCAAATGGTCAATGACACATGTCAGC ATCACATTATCTGCCACCATTGTTATCTTAGCTTTTGTTATGTTCTTGGT TGAACGATGGTTACGACTCGATAACccaatcaatgttttttatcTCTACG TTTTGGCGTTTATTGCTACGATGACGGCGAATAGTCTTTTAATGTTTTCT ATAAGCATATCTGAAATTGGACTATTTTATCAAACTATCTTGATTGGAGC GTTACTGACGTTTAGTGCGTTTCCTTTCTACGCGTCAACGGCTTATTGTA GATCACTCTTGTTTTTTATCACGCCGTCAGACTCCGCAAGTACCGTTGAA TCGTACCGTAACGTCGTACAACAATTCATGTTAGCTGTCTCAATGTTCCT GGCTAGTCATGTTTTTGATCATTTAACGACTGCTACTATGACTTACTTTG CCATTGCGTACTCTATTTTTCTTATGTTGCTATGCTGGTATAAGAAGAGA TATTTTCAACGGCTATCAAAAGGACGGACAAAAAGAGACAACTGAAGTGA AGAAGGATTTTTGCCCctgcaggagcgcagcgacgaggaggcactcatag tttcacgcgtagatattggactggaatctcgaaattttgttgtttttgtt gtttttttgtcgcgcaagcatccccgtagttagtctcttccgtaaatgtt cggtttttttttcgggacagTATGTAtgtcgtgggttcaatccccactcg CTTCGTTACCTTTGTTCTGGTCTTTGTCCCTTGTTTTGTTCTGCATTTTA TAcacaattcaattttaaaataatttatataatttatata Run BLAST on NCBI protein sequence of TCONS_00005171-protein >TCONS_00005171-protein ID=TCONS_00005171-protein|Name=TCONS_00005171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
MADIPSDAVIKKWKNKRWWMTLLTTIQSSLQFFEYSVFQITALFYFKKNF DLENPRLFYSISMGIIFASGLVSSVICGHYMDRTRDLRSIFIFTLTLNVL GNLMYTWTISPYFPVFGRFLTGFVCGVPTAATGEFSRVYRQDQLVGVLSR YTIISTAANTLGPCSAPLFHGVDIKLGWWHLTQYNFIGLVLAILALLTTI VGYFKLSNLTREPVYDRIKGEFTEGFMQNEPSSDDGKESKRREKETDHKD HENVTTRDTQREDGDQINKCTESKTKLISLKAILRDREVITLLIGELFLS YQSQTEMLTNMVAVFVFKWSMTHVSITLSATIVILAFVMFLVERWLRLDN PINVFYLYVLAFIATMTANSLLMFSISISEIGLFYQTILIGALLTFSAFP FYASTAYCRSLLFFITPSDSASTVESYRNVVQQFMLAVSMFLASHVFDHL TTATMTYFAIAYSIFLMLLCWYKKRYFQRLSKGRTKRDN Run BLAST on NCBI transcript from alignment at sc0000051:12772..15507- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005171 ID=TCONS_00005171|Name=TCONS_00005171|organism=Clytia hemisphaerica|type=transcript|length=2736bp|location=Sequence derived from alignment at sc0000051:12772..15507- (Clytia hemisphaerica) CTGTCTGTCTCAAGTAGACTAGCAAAAGTCTAGCGCAACCTATGGCATTT
GTTCAAATTTAATATTTATATAATTCATGATTTCTTGTATTTGTGTCTCG
TGGGGCTCATGGCACACCTTTCTCTCACCTTTCTGTGATGCCTGACAGAG
AATCTTTGACTTTTATCAAAAATTTCCAACGACACTAATAATTGAAACCT
TACATATTTTAGTATAAAAAAAATAATGGCTGACATCCCCTCAGATGCGG
TTATAAAGAAATGGAAAAACAAACGGTGGTGGATGACACTGCTCACAACA
ATTCAAAGCAGTTTACAATTTTTTGAGTACTCTGTTTTCCAAATCACAGC
TTTATTTTACTTTAAAAAGAATTTCGACTTAGAAAATCCACGATTATTTT
ACAGTATCTCAATGGGGATTATCTTCGCTTCAGGACTTGTCAGGTTTGTT
GTTTTTTTACTTTGGTTAGGCTTCGTTTAATTCACAATAAGCATTTTCAT
AAATGACGTCATGAACAACACTTGCCTCATTTTCGAAATAATGCTATGAC
AACTAATTCCCAACAGATTTTCTTAGAGGTGCGCTCTTTTCATAAAAGTA
TGATTTAAGGCCTCGACGGAGATAATCACCTTGAGTAATCGTTTCAAAAC
GAGGCAAGTGTTGTTCCTGACGTAATTCATAAAAAGGCCTATTCATAGTT
AAAGCAAGTACCCAGGTTTTAAGATAATAGAAAAGAGACTGAGACAGAAA
AGGAAAAGGACAAATCAAGATTTTGGTTAACCCCAGCTGGCACACAGCGT
TGTTTCAACGTTCATTTAACTGATCAACCCTGCCCTTTCTCAAAATTTTA
CAAATTTTGTCACTTTCTTTGGGGGAAAAAACAACCACCCGCTTCCTATT
AGTCATGGCATACTAATGTAATATAACATGATTATTATGATTTCTAGCTC
AGTGATTTGTGGACATTACATGGATCGGACAAGAGACCTGCGATCAATCT
TCATCTTCACTTTAACACTGAACGTTCTTGGCAATCTGATGTATACATGG
ACGATATCACCTTATTTTCCTGTGTTTGGGCGTTTCTTAACAGGCTTTGT
ATGTGGAGTACCTACTGCCGCAACAGGTAAAATATTGGCTAGTCCATGTA
ACCAACAGTCTGTACGACGGCGATAAATAGCAATCGATATTCATATATGC
ACGACACTATTTTAACTTTGTGAACTGAGATCGACGTAAGAGTTAAGTTT
TTTTGTCATCTTATCTTGCCGGCGTGGGTACATAAACTTGTTATTGACAG
GGGATAATAAGGGCTTACCACGCTGATAACTGGACACTTTATTCTATTTT
TATTTGTTTTTATTTCAGGGGAATTTTCGCGTGTTTACAGACAAGACCAA
TTAGTTGGTGTTTTATCTCGCTACACAATCATTTCAACGGCAGCAAACAC
ACTTGGTCCTTGCAGCGCACCTTTATTTCATGGTGTGGATATCAAACTAG
GTTGGTGGCATTTAACTCAATATAATTTCATTGGGCTTGTCTTGGCAATC
CTTGCACTCTTAACAACGATAGTCGGCTATTTCAAATTGAGTAATTTAAC
GAGGGAACCCGTTTACGATAGAATTAAAGGAGAGTTTACAGAGGGTTTCA
TGCAAAATGAACCTTCCTCCGATGATGGGAAAGAATCTAAGAGGAGAGAA
AAGGAAACTGATCATAAGGACCATGAAAATGTTACAACGAGAGATACACA
GCGCGAAGACGGTGATCAGATTAACAAATGTACTGAGAGCAAAACGAAAC
TGATATCTTTGAAAGCAATATTGCGTGATCGTGAGGTGATCACTTTATTG
ATTGGTGAGTTATTTTTATCGTATCAAAGCCAAACTGAGATGTTGACCAA
CATGGTTGCAGTGTTCGTGTTCAAATGGTCAATGACACATGTCAGCATCA
CATTATCTGCCACCATTGTTATCTTAGCTTTTGTTATGTTCTTGGTTGAA
CGATGGTTACGACTCGATAACCCAATCAATGTTTTTTATCTCTACGTTTT
GGCGTTTATTGCTACGATGACGGCGAATAGTCTTTTAATGTTTTCTATAA
GCATATCTGAAATTGGACTATTTTATCAAACTATCTTGATTGGAGCGTTA
CTGACGTTTAGTGCGTTTCCTTTCTACGCGTCAACGGCTTATTGTAGATC
ACTCTTGTTTTTTATCACGCCGTCAGACTCCGCAAGTACCGTTGAATCGT
ACCGTAACGTCGTACAACAATTCATGTTAGCTGTCTCAATGTTCCTGGCT
AGTCATGTTTTTGATCATTTAACGACTGCTACTATGACTTACTTTGCCAT
TGCGTACTCTATTTTTCTTATGTTGCTATGCTGGTATAAGAAGAGATATT
TTCAACGGCTATCAAAAGGACGGACAAAAAGAGACAACTGAAGTGAAGAA
GGATTTTTGCCCCTGCAGGAGCGCAGCGACGAGGAGGCACTCATAGTTTC
ACGCGTAGATATTGGACTGGAATCTCGAAATTTTGTTGTTTTTGTTGTTT
TTTTGTCGCGCAAGCATCCCCGTAGTTAGTCTCTTCCGTAAATGTTCGGT
TTTTTTTTCGGGACAGTATGTATGTCGTGGGTTCAATCCCCACTCGCTTC
GTTACCTTTGTTCTGGTCTTTGTCCCTTGTTTTGTTCTGCATTTTATACA
CAATTCAATTTTAAAATAATTTATATAATTTATATA Coding sequence (CDS) from alignment at sc0000051:12772..15507- >TCONS_00005171 ID=TCONS_00005171|Name=TCONS_00005171|organism=Clytia hemisphaerica|type=CDS|length=4410bp|location=Sequence derived from alignment at sc0000051:12772..15507- (Clytia hemisphaerica) GGGAATTTTCGCGTGTTTACAGACAAGACCAATTAGTTGGTGTTTTATCT CGCTACACAATCATTTCAACGGCAGCAAACACACTTGGTCCTTGCAGCGC ACCTTTATTTCATGGTGTGGATATCAAACTAGGTTGGTGGCATTTAACTC AATATAATTTCATTGGGCTTGTCTTGGCAATCCTTGCACTCTTAACAACG ATAGTCGGCTATTTCAAATTGAGTAATTTAACGAGGGAACCCGTTTACGA TAGAATTAAAGGAGAGTTTACAGAGGGTTTCATGCAAAATGAACCTTCCT CCGATGATGGGAAAGAATCTAAGAGGAGAGAAAAGGAAACTGATCATAAG GACCATGAAAATGTTACAACGAGAGATACACAGCGCGAAGACGGTGATCA GATTAACAAATGTACTGAGAGCAAAACGAAACTGATATCTTTGAAAGCAA TATTGCGTGATCGTGAGGTGATCACTTTATTGATTGGTGAGTTATTTTTA TCGTATCAAAGCCAAACTGAGATGTTGACCAACATGGTTGCAGTGTTCGT GTTCAAATGGTCAATGACACATGTCAGCATCACATTATCTGCCACCATTG TTATCTTAGCTTTTGTTATGTTCTTGGTTGAACGATGGTTACGACTCGAT AACCCAATCAATGTTTTTTATCTCTACGTTTTGGCGTTTATTGCTACGAT GACGGCGAATAGTCTTTTAATGTTTTCTATAAGCATATCTGAAATTGGAC TATTTTATCAAACTATCTTGATTGGAGCGTTACTGACGTTTAGTGCGTTT CCTTTCTACGCGTCAACGGCTTATTGTAGATCACTCTTGTTTTTTATCAC GCCGTCAGACTCCGCAAGTACCGTTGAATCGTACCGTAACGTCGTACAAC AATTCATGTTAGCTGTCTCAATGTTCCTGGCTAGTCATGTTTTTGATCAT TTAACGACTGCTACTATGACTTACTTTGCCATTGCGTACTCTATTTTTCT TATGTTGCTATGCTGGTATAAGAAGAGATATTTTCAACGGCTATCAAAAG GACGGACAAAAAGAGACAACTGACTCAGTGATTTGTGGACATTACATGGA TCGGACAAGAGACCTGCGATCAATCTTCATCTTCACTTTAACACTGAACG TTCTTGGCAATCTGATGTATACATGGACGATATCACCTTATTTTCCTGTG TTTGGGCGTTTCTTAACAGGCTTTGTATGTGGAGTACCTACTGCCGCAAC AGATGGCTGACATCCCCTCAGATGCGGTTATAAAGAAATGGAAAAACAAA CGGTGGTGGATGACACTGCTCACAACAATTCAAAGCAGTTTACAATTTTT TGAGTACTCTGTTTTCCAAATCACAGCTTTATTTTACTTTAAAAAGAATT TCGACTTAGAAAATCCACGATTATTTTACAGTATCTCAATGGGGATTATC TTCGCTTCAGGACTTGTCAGGGGAATTTTCGCGTGTTTACAGACAAGACC AATTAGTTGGTGTTTTATCTCGCTACACAATCATTTCAACGGCAGCAAAC ACACTTGGTCCTTGCAGCGCACCTTTATTTCATGGTGTGGATATCAAACT AGGTTGGTGGCATTTAACTCAATATAATTTCATTGGGCTTGTCTTGGCAA TCCTTGCACTCTTAACAACGATAGTCGGCTATTTCAAATTGAGTAATTTA ACGAGGGAACCCGTTTACGATAGAATTAAAGGAGAGTTTACAGAGGGTTT CATGCAAAATGAACCTTCCTCCGATGATGGGAAAGAATCTAAGAGGAGAG AAAAGGAAACTGATCATAAGGACCATGAAAATGTTACAACGAGAGATACA CAGCGCGAAGACGGTGATCAGATTAACAAATGTACTGAGAGCAAAACGAA ACTGATATCTTTGAAAGCAATATTGCGTGATCGTGAGGTGATCACTTTAT TGATTGGTGAGTTATTTTTATCGTATCAAAGCCAAACTGAGATGTTGACC AACATGGTTGCAGTGTTCGTGTTCAAATGGTCAATGACACATGTCAGCAT CACATTATCTGCCACCATTGTTATCTTAGCTTTTGTTATGTTCTTGGTTG AACGATGGTTACGACTCGATAACCCAATCAATGTTTTTTATCTCTACGTT TTGGCGTTTATTGCTACGATGACGGCGAATAGTCTTTTAATGTTTTCTAT AAGCATATCTGAAATTGGACTATTTTATCAAACTATCTTGATTGGAGCGT TACTGACGTTTAGTGCGTTTCCTTTCTACGCGTCAACGGCTTATTGTAGA TCACTCTTGTTTTTTATCACGCCGTCAGACTCCGCAAGTACCGTTGAATC GTACCGTAACGTCGTACAACAATTCATGTTAGCTGTCTCAATGTTCCTGG CTAGTCATGTTTTTGATCATTTAACGACTGCTACTATGACTTACTTTGCC ATTGCGTACTCTATTTTTCTTATGTTGCTATGCTGGTATAAGAAGAGATA TTTTCAACGGCTATCAAAAGGACGGACAAAAAGAGACAACTGACTCAGTG ATTTGTGGACATTACATGGATCGGACAAGAGACCTGCGATCAATCTTCAT CTTCACTTTAACACTGAACGTTCTTGGCAATCTGATGTATACATGGACGA TATCACCTTATTTTCCTGTGTTTGGGCGTTTCTTAACAGGCTTTGTATGT GGAGTACCTACTGCCGCAACAGATGGCTGACATCCCCTCAGATGCGGTTA TAAAGAAATGGAAAAACAAACGGTGGTGGATGACACTGCTCACAACAATT CAAAGCAGTTTACAATTTTTTGAGTACTCTGTTTTCCAAATCACAGCTTT ATTTTACTTTAAAAAGAATTTCGACTTAGAAAATCCACGATTATTTTACA GTATCTCAATGGGGATTATCTTCGCTTCAGGACTTGTCAGGGGAATTTTC GCGTGTTTACAGACAAGACCAATTAGTTGGTGTTTTATCTCGCTACACAA TCATTTCAACGGCAGCAAACACACTTGGTCCTTGCAGCGCACCTTTATTT CATGGTGTGGATATCAAACTAGGTTGGTGGCATTTAACTCAATATAATTT CATTGGGCTTGTCTTGGCAATCCTTGCACTCTTAACAACGATAGTCGGCT ATTTCAAATTGAGTAATTTAACGAGGGAACCCGTTTACGATAGAATTAAA GGAGAGTTTACAGAGGGTTTCATGCAAAATGAACCTTCCTCCGATGATGG GAAAGAATCTAAGAGGAGAGAAAAGGAAACTGATCATAAGGACCATGAAA ATGTTACAACGAGAGATACACAGCGCGAAGACGGTGATCAGATTAACAAA TGTACTGAGAGCAAAACGAAACTGATATCTTTGAAAGCAATATTGCGTGA TCGTGAGGTGATCACTTTATTGATTGGTGAGTTATTTTTATCGTATCAAA GCCAAACTGAGATGTTGACCAACATGGTTGCAGTGTTCGTGTTCAAATGG TCAATGACACATGTCAGCATCACATTATCTGCCACCATTGTTATCTTAGC TTTTGTTATGTTCTTGGTTGAACGATGGTTACGACTCGATAACCCAATCA ATGTTTTTTATCTCTACGTTTTGGCGTTTATTGCTACGATGACGGCGAAT AGTCTTTTAATGTTTTCTATAAGCATATCTGAAATTGGACTATTTTATCA AACTATCTTGATTGGAGCGTTACTGACGTTTAGTGCGTTTCCTTTCTACG CGTCAACGGCTTATTGTAGATCACTCTTGTTTTTTATCACGCCGTCAGAC TCCGCAAGTACCGTTGAATCGTACCGTAACGTCGTACAACAATTCATGTT AGCTGTCTCAATGTTCCTGGCTAGTCATGTTTTTGATCATTTAACGACTG CTACTATGACTTACTTTGCCATTGCGTACTCTATTTTTCTTATGTTGCTA TGCTGGTATAAGAAGAGATATTTTCAACGGCTATCAAAAGGACGGACAAA AAGAGACAACTGACTCAGTGATTTGTGGACATTACATGGATCGGACAAGA GACCTGCGATCAATCTTCATCTTCACTTTAACACTGAACGTTCTTGGCAA TCTGATGTATACATGGACGATATCACCTTATTTTCCTGTGTTTGGGCGTT TCTTAACAGGCTTTGTATGTGGAGTACCTACTGCCGCAACAGATGGCTGA CATCCCCTCAGATGCGGTTATAAAGAAATGGAAAAACAAACGGTGGTGGA TGACACTGCTCACAACAATTCAAAGCAGTTTACAATTTTTTGAGTACTCT GTTTTCCAAATCACAGCTTTATTTTACTTTAAAAAGAATTTCGACTTAGA AAATCCACGATTATTTTACAGTATCTCAATGGGGATTATCTTCGCTTCAG GACTTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005171-exon-sc0000051-1575043694:15065..15507 | TCONS_00005171-exon-sc0000051-1575043694:15065..15507 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1575043694:14382..14560 | TCONS_00005171-exon-sc0000051-1575043694:14382..14560 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1575043694:12772..14139 | TCONS_00005171-exon-sc0000051-1575043694:12772..14139 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1510915933:15065..15507 | TCONS_00005171-exon-sc0000051-1510915933:15065..15507 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1510915933:14382..14560 | TCONS_00005171-exon-sc0000051-1510915933:14382..14560 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1510915933:12772..14139 | TCONS_00005171-exon-sc0000051-1510915933:12772..14139 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1491911889:15065..15507 | TCONS_00005171-exon-sc0000051-1491911889:15065..15507 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1491911889:14382..14560 | TCONS_00005171-exon-sc0000051-1491911889:14382..14560 | Clytia hemisphaerica | exon |
TCONS_00005171-exon-sc0000051-1491911889:12772..14139 | TCONS_00005171-exon-sc0000051-1491911889:12772..14139 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000051 | supercontig | sc0000051:12772..15507 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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