TCONS_00005170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005170
Unique NameTCONS_00005170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005170 ID=TCONS_00005170|Name=TCONS_00005170|organism=Clytia hemisphaerica|type=transcript|length=1304bp
CAACCATACTCCAAACATCCTATTCTCTACATTCCGACACTGTTTCTAAA
AGTTTCTCTTCGTTCTTTGATTTGCAGTTTGTTGAAATCGAGTGAGATGT
TGAAGCCTTCTACAATCTCACACAACAGTGCACAAGACGGATCCAACAAC
AATTCGGATGACCTGAACAATTAATTCTACCCTCATCTTGTGTTTGTCTA
CACATCATGTGACACGCGGTCTTTcgaatatgacgtcatcaaatccACCT
GTCAGGTCACGTGGAAGTTGTTTGAAAATTCGCGTCTTCATGTCCGTGAT
GAGGAAGATTACGAAAACCAGTTGACGTATCAAGGCTTCCCTTCCTCCCA
AACAATCATCTCACTACTCCGCCAACAACTCTCCGCCCTTCCTCGAACGC
CCTTCACGCATCACGTGCTTTCGGAGAAAAACTGGTTTCATTACGCAGCT
CGCACGTGGGAAGCGTGAAAAAGTCCAACCTCATCGCCGAATACCATCGC
CTATTGACCAATTAAAATCCTTTCCAAATCTTGTTTTTGTATATATCGTC
TACTTTTTGTTGGAGTGTCGAAAAAGTTGGAAAACTGAATTTATTATTTT
CCTTGTATACTGTTCCATGTAATGTACCAGCATCTTATGTAGGATTTGAA
gcaatacagtagagtctcttttaCTCGAACCTTCATAACTCAAATGTCTT
TTAACTCAAACAAGTGTTGTGGTCCCttaagttaacaatgccttataagc
cttactccataactcgacaTTTCCTAAACTCGAACAAATtagtgttcccc
gtgcgtgctCGAGTTATGGATACTACACTGTATTTTTTACGTAAATTAAA
TCGGCTGCGATTCATCCAATATTACAATGGACCAAGCACCTGGTACGTGG
CCATGTTAACATATGCTTTCAAGAAACCATGAAATTCCTCTTTCgaaaaa
ctgaataaaatttTCCTCGTAGTTAAGGGCTAGTTCTTAGAGCTCATTGC
CATGGCAACTATGAGAGAAGGCATGCGAATAAAGCCTGATGAAGCTTTTC
ATGACCATTTTTATGGTCTCTCAACTAAAATAAACTCTATTGCGCCAGCA
TGAAATCAATGTTCCAAGCTACTTAATAAAATTCCTAAATACAACATATA
ATCactctatgttttcattttaaaatgaatGTCGTTCTTTGTCAAATTAG
CCCATCAGTTAAATTACAGGCGAGAATAGCTTTTGATATTAGTTTGAATT
AGATTATGCATTCGTGCTCGTTGTAAAGATAATAATAATGTAAACATCTT
ACGA
Run BLAST on NCBI

transcript from alignment at sc0000051:763255..765827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005170 ID=TCONS_00005170|Name=TCONS_00005170|organism=Clytia hemisphaerica|type=transcript|length=2573bp|location=Sequence derived from alignment at sc0000051:763255..765827+ (Clytia hemisphaerica)
CAACCATACTCCAAACATCCTATTCTCTACATTCCGACACTGTTTCTAAA
AGTTTCTCTTCGTTCTTTGATTTGCAGTTTGTTGAAATCGAGTGAGATGT
TGAAGCCTTCTACAATCTCACACAACAGTGCACAAGACGGATCCAAGTAA
GTTCTGTGTTGTCTTTCAATGATTCTGACAGTCCCTTTAATACAAGTAAG
ATTAGATCATTAAATGCCAGCTAGGACTGAATTTTTGAAAGGTCTTTTTA
ACTAGAAGATTGAACGAAGGACAAAGGAACAAAATTTCAGTTCGAGAAAT
TTAGAACACTTTAAATTACTGgcaaaaattattatttgacTACGATTCAA
ATTGAGGAGGCTTTTAAAAGAATTACCCAGGCTGTCCTGCGGCAGTCCTA
GGTGGACCAGGGGGTGGCCAGTTCATCTATTTTCTCATTCAGTCAAATGT
CTAAAATATTTGCTCAATTCAAGTACCGTTTAAAAGTATcaatttgtgca
aaaaaaatcaaaattgttgaGAACAAGGAGACGAAATTAGGATGGAGATT
CATAATTATACCCTATTTTACCAATTCTCAAAATTGGTGTTGTGGTATGC
AAAAATTTCTCGAAATCATATATGTAAAAGATTCAAGGTTCAAACATCCA
TTTGGTATacgtttctttttttaatttttattcagCAACAATTCGGATGA
CCTGAACAATTAATTCTACCCTCATCTTGGTAAGTTGTCCGTCCAGCCGC
CCGCCCGTTCGCCGACCCGTTCGCTCTTTCGTTCGGTTCATCTTCGCATA
cttttgtcaaataaaaaatgaaattgtattaaatttagaaatttcaacgT
AACGAAGCACTGTTAACATTTCTCGTTCACTTTTCAGTGTTTGTCTACAC
ATCATGTGACACGCGGTCTTTcgaatatgacgtcatcaaatccACCTGTC
AGGTCACGTGGAAGTTGTTTGAAAATTCGCGTCTTCATGTCCGTGGTGAG
TTTCGAacggttttgtttttgttttgtttttagttgTTCGAAGGTTTTTT
CACGCATCGAGTCGCCGACAAATAGTTTCAAAGAGACGTCAATCTTTACT
TCATTCCTTCGCTCTTTCCGTCAAAAGATGAGGAAGATTACGAAAACCAG
TTGACGTATCAAGGCTTCCCTTCCTCCCAAACAATCATCTCACTACTCCG
CCAACAACTCTCCGCCCTTCCTCGAACGCCCTTCACGCATCACGTGCTTT
CGGAGAAAAACTGGTAAGCACACTCTCTTATCACTTTTCTACGAACTAAA
GTGGACAGAGCTTCTACTATAGAAAACCTTCTTTACCCTTAAAATTGGAG
GAATGCGTTTATATACGCGTTTCAAAATAGGTCAAAATACAAGACTTATA
GCCCTAGCTCTTGACCACTTTATTTAAAAGGGCATAACGGAAGACTTTTA
GAGcgattatgaaatatttcaataaaaaatgaaaaaagcaaaatcaattt
tttcaaaacagagTTGATGATTGTATAAAGGTGGACACTTCTAGATAACA
AATCGAGGAAATTTCTTAACAAGTTAAAGATTAAATCAGAGACACCGACT
GTGTTTGATTATAATAAACTAAATAAGACACCTTTGATCGTGTAATTCAA
TCATTGCTGTTGTTTATCGCTGTTGTTGATCGTTGCATTTTCTTCTTTGG
TAGGTTTCATTACGCAGCTCGCACGTGGGAAGCGTGAAAAAGTCCAACCT
CATCGCCGAATACCATCGCCTATTGACCAATTAAAATCCTTTCCAAATCT
TGTTTTTGTATATATCGTCTACTTTTTGTTGGAGTGTCGAAAAAGTTGGA
AAACTGAATTTATTATTTTCCTTGTATACTGTTCCATGTAATGTACCAGC
ATCTTATGTAGGATTTGAAgcaatacagtagagtctcttttaCTCGAACC
TTCATAACTCAAATGTCTTTTAACTCAAACAAGTGTTGTGGTCCCttaag
ttaacaatgccttataagccttactccataactcgacaTTTCCTAAACTC
GAACAAATtagtgttccccgtgcgtgctCGAGTTATGGATACTACACTGT
ATTTTTTACGTAAATTAAATCGGCTGCGATTCATCCAATATTACAATGGA
CCAAGCACCTGGTACGTGGCCATGTTAACATATGCTTTCAAGAAACCATG
AAATTCCTCTTTCgaaaaactgaataaaatttTCCTCGTAGTTAAGGGCT
AGTTCTTAGAGCTCATTGCCATGGCAACTATGAGAGAAGGCATGCGAATA
AAGCCTGATGAAGCTTTTCATGACCATTTTTATGGTCTCTCAACTAAAAT
AAACTCTATTGCGCCAGCATGAAATCAATGTTCCAAGCTACTTAATAAAA
TTCCTAAATACAACATATAATCactctatgttttcattttaaaatgaatG
TCGTTCTTTGTCAAATTAGCCCATCAGTTAAATTACAGGCGAGAATAGCT
TTTGATATTAGTTTGAATTAGATTATGCATTCGTGCTCGTTGTAAAGATA
ATAATAATGTAAACATCTTACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002943XLOC_002943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005170-exon-sc0000051-1491911889:763255..763400TCONS_00005170-exon-sc0000051-1491911889:763255..763400Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1510915933:763255..763400TCONS_00005170-exon-sc0000051-1510915933:763255..763400Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1575043694:763255..763400TCONS_00005170-exon-sc0000051-1575043694:763255..763400Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1491911889:763940..763983TCONS_00005170-exon-sc0000051-1491911889:763940..763983Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1510915933:763940..763983TCONS_00005170-exon-sc0000051-1510915933:763940..763983Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1575043694:763940..763983TCONS_00005170-exon-sc0000051-1575043694:763940..763983Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1491911889:764142..764249TCONS_00005170-exon-sc0000051-1491911889:764142..764249Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1510915933:764142..764249TCONS_00005170-exon-sc0000051-1510915933:764142..764249Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1575043694:764142..764249TCONS_00005170-exon-sc0000051-1575043694:764142..764249Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1491911889:764382..764517TCONS_00005170-exon-sc0000051-1491911889:764382..764517Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1510915933:764382..764517TCONS_00005170-exon-sc0000051-1510915933:764382..764517Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1575043694:764382..764517TCONS_00005170-exon-sc0000051-1575043694:764382..764517Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1491911889:764958..765827TCONS_00005170-exon-sc0000051-1491911889:764958..765827Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1510915933:764958..765827TCONS_00005170-exon-sc0000051-1510915933:764958..765827Clytia hemisphaericaexon
TCONS_00005170-exon-sc0000051-1575043694:764958..765827TCONS_00005170-exon-sc0000051-1575043694:764958..765827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:763255..765827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1906	10.5568	6.65783	5.46099	4.05973	3.38593	5.23549	5.24617	4.64614	4.18633	6.53715	7.04575	8.96472	11.2551	8.54043	7.78618	7.21625	6.13955	11.5931	8.179	6.09105	6.2062	10.2657	8.76745	13.3778	13.9742	4.91342	5.72052	4.6746	6.22663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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