TCONS_00005152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005152
Unique NameTCONS_00005152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005152 ID=TCONS_00005152|Name=TCONS_00005152|organism=Clytia hemisphaerica|type=transcript|length=2120bp
CAGAGAATGGCGAAAAATTTCAACATTGCGAAGATGTTAGAAGATCCAGC
TAACATAACAACAAGCAATTCAAAAGAAGTACTGAAAACTTTCAACCGGA
GAAGCAAAGGAAAATCATGGATGTAtacttttgatgacgtcacttcaGCC
GTTAATTTGGTTTCTCTTCTGTCAGCATTATTGATATTACAAATATTGAG
GATCAAAAACACAACGAAAATCGTAATCCACAAGAATTTGATTCTTTCGT
TCGCACTCTCAATTATATCTCACAAATTTCCAAGATGGTTTTGGAATGGT
TTGGAGAGTACTTCCAACAATGGTTGCATTAGTGTCTTGTTCATATCATA
TTATACCAAATTGTGTTTGTTTTCATGGACGACGGTCGAGGGATTGAATC
TAGTGATAGTGGTTGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTATCCA
CAAATGTTCTGCTTTGGTTACGgtattcCTTTCTTGGTCACATTGCTGGT
GGGGGTGATTTTCTTCGATGATTTCAAGACCACAACTGATTGTATAGGTT
TCAAGAAGAATGTGTGGATCATCAAAATCCCTGTCATGTGTTACGTCATC
ACCAATTGCATACTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCCACGA
GAGGAGGAGGGaaagtcaaaacaaaagtaACAAAAGTGACATCAACAGCG
CAAAAACCTTACAATCCATTCGAACCCTTTTGATCTTGACATCGCTACTg
ggtctaccatttttgttgacCATCTTTATCGcctatgatgacgtcatctt
aaGCATGTATTTGGTCTTGAATGGACTTGCAGGGTTATATCTTTTGGTTG
GTCAAGTCCTACGCGATGAAGAGGTCAAGAAGGAAATACGAAAAAGATTG
CTCATTTGGAGAAAGAATAAGCGAGATAATGAACAAAGAGCAGACGGTGG
AGTGAGACAAACTCCTTGTTGACATGGAACTATGAGGATAACCTGCACTC
AACCTTTGAGGATGAAAAAAAAGGTGATGATTATAGCACAAAGAGTTTGT
TTTTTGGGCAAAATGGTCGCCATGACTATTTGTTTGAGGCACTTATAATT
ATCTAACAATTAGGAGTAACACCTTAACGAAGGAACTTTAGCAAGAAGTC
CTGTCTGAATGTGAGTGACCTCAGATGAAGAAAAATATGCTTTTGGCATC
ATGTCACCATAAACACGGAAAAGTCGGTAACCATGACAACCATAGGAAAA
CTCTTTGTAAACGAGGTCGTTGTCAACGAATAGGAGACATTGGTTTGAGA
GCAATGACGTCATGAACACCAGCAGCCATGGTAATGGAGGAGTCTCTACA
GATTTTATAAATCCATTGAGAAGTTATGAGGTGCTTGTATTTTAGGGAAG
GTACCTGAAGTTTATTTTTCTGATCAATGGAGGACATTGAGTGTTTAAAA
TGTAACTTGTTACTGTTAGCATGATTATCTGATTAATAGTGTAATAGTAT
TCTGCACACTAACCATTTTTGCACGTCAGTGAGAAGCCTGGGAACAAGTC
ACGTGACTGTTTGAGGTAATTGAATGCGGGGTAGAGTAACGAGTTTCAGC
AAACAAAGAAGGCAATTTAAAAGTTTatgtaaatttcaaaatgggTATAA
TTATTTGTTGACGTCATATGAGATAACAATGAACATTGCAAAAGTGTATC
TTTGGGTACTTTCATCACTATAGTATGAACATTTTTAACGACATTTTTGT
GAGGGGGTGGAGCTCGTTTACCCGTTGCCGTGAAAATTGGTCCCAAATTc
gaattttccttcaaaaagaatattttgaaagtatAAGAGTAAATAAAACG
ATTTATCAAAGAAGTACGCAACGACCATGAAAATCAACAACCACCGCAAC
CAATGACAGATACAACAGAGACCAACAAAGAAAATCTACCAGTTACCAGT
AAAGTTAAGATTTACTTACCATACGCAGGAAAACAAGGAGAGTTGATTAC
CAATGAACTTAAGAAAACTGTTAATAAAATCTTTGATAAAAAGTTAGTGA
CGCAAGTCACatttaaatcaaagaaattgagTTCTTGCTTTAATGTCAAG
GACACAACCCAAACGAAACA
Run BLAST on NCBI

protein sequence of TCONS_00005152-protein

>TCONS_00005152-protein ID=TCONS_00005152-protein|Name=TCONS_00005152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
QRMAKNFNIAKMLEDPANITTSNSKEVLKTFNRRSKGKSWMYTFDDVTSA
VNLVSLLSALLILQILRIKNTTKIVIHKNLILSFALSIISHKFPRWFWNG
LESTSNNGCISVLFISYYTKLCLFSWTTVEGLNLVIVVVLVFKLKSKGYP
QMFCFGYGIPFLVTLLVGVIFFDDFKTTTDCIGFKKNVWIIKIPVMCYVI
TNCILVGLIFSKILFHERRRESQNKSNKSDINSAKTLQSIRTLLILTSLL
GLPFLLTIFIAYDDVILSMYLVLNGLAGLYLLVGQVLRDEEVKKEIRKRL
LIWRKNKRDNEQRADGGVRQTPC
Run BLAST on NCBI

transcript from alignment at sc0000051:660092..665644+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005152 ID=TCONS_00005152|Name=TCONS_00005152|organism=Clytia hemisphaerica|type=transcript|length=5553bp|location=Sequence derived from alignment at sc0000051:660092..665644+ (Clytia hemisphaerica)
CAGAGAATGGCGAAAAATTTCAACATTGCGAAGATGTTAGAAGATGTAAG
TTGAAAATTCCTTCCAAAGAGTCAGGTTTATTAGGGAGGCCCTATTATTA
CAGAAGATATACATAACTGGCGGAAAAAATGGCAGGGATCGTCTTTCTTG
GGGAATCGAATATGGATTTTCTTTACAAAGTTGTAAATCCTATAGAACTT
TGTAAAACGTATAGAACCTTATAACTTAAGCCGTGACTAGTTGACaactt
tagataaaaaataCGAAAGTaagtcagaaaaaacattttggttCCTTGAT
GGTGAAGGAGAAACGAAAtgttttacttaaaaaaaagcTTTCGTACTAAA
CTAAGTACACTCTTCGGGCATATTTTGTTTATGTCTTTGAGTATCAAGGA
ACCGCCTGGACGCCTTTCCTTTTTGTTAAAATAGCTTTCGTTAATATCAA
TTGCACTGTATTTTTCTTTCATCGTTAGCCAGCTAACATAACAACAAGCA
ATTCAAAAGAAGTACTGAAAACTTTCAACCGGAGAAGCAAAGGAAAATCA
TGGATGTAtacttttgatgacgtcacttcaGCCGTTAATTTGGTTTCTCT
TCTGTCAGCATTATTGATATTACAAATATTGAGGTACCCATTCTTCTATC
CGGGGAGCATTCCTGTAAACTTCATCTTACGATTCAAAAGGGTACAGGAG
CTAATGAGAAATCTTAATCTATTGATTTTTTCAGACATGACAACAGTCCA
AAACCTCTAAATTAATGACAGAAAACTTTTCATTACAGGATCAAAAACAC
AACGAAAATCGTAATCCACAAGAATTTGATTCTTTCGTTCGCACTCTCAA
TTATATCTCACAAATTTCCAAGATGGTTTTGGAATGGTTTGGAGAGTACT
TCCAACGTAAGACTTGATTATTTTGGAAGACTTAAGGTTGTAGTAAATTA
CCAGAAGAGCCTTTTGAGCCTTTTGAGTGATATTTCAGGAGAATGCTTTC
GAGTAAAATCTTTAAGTTTTCTGTCCGATATCTAAAAGCATATAAAGATT
GAAGCTGAATGAAAACAATCTCAACTGATATTCAAAGACCCCTGAAGGAT
AAGCAAAATATAGCACATTACAATACAAACTTTATTTCCATTTTTCTGCC
TATAGAATGGTTGCATTAGTGTCTTGTTCATATCATATTATACCAAATTG
TGTTTGTTTTCATGGACGACGGTCGAGGGATTGAATCTAGTGATAGTGGT
TGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTATCCACAAATGTTCTGCT
TTGGTTACGGTACGTTATTTTcttcatgttttgaaaaaagcaCCCCATAA
AGGGCAATTAATCTACAATCTTTTGCAAAATATGTGAGACACTTTTCCAA
AAAGCAACCCCCTCCCCCAAAACAATGTTGTTTATGGAATCAAGCTGTTA
CTGCACTCAACATTGTTTTGGGGGAGGGGGAATCTTAAATTTGCTATATT
TGTAAGGTGTTTCATGATATTTTGCAGAATATTGTAGTAAAGCAAGTCTT
CCTCACCTTTGTGAAAATCTTTGTCACAACCCCCCTTGCAGTGGatccaa
aaagatttttggtgGGGAATATTACTTCGTCTACTTGcctaaatattttt
aactttcgttcactctcattttttttcaggtattcCTTTCTTGGTCACAT
TGCTGGTGGGGGTGATTTTCTTCGATGATTTCAAGACCACAACTGAGTAA
GTCAGAAGACACCATCAATTCATGAATCCTAGATAGTGAGAGATCTTAGG
TATTcttctgttattgatgtttagCCTGTTTAGCATACAGTATCTCTACG
AATTGACAGAAGGTCATTGAGACAAGATGTGTGTTGAAAACGAAATCCCT
ATAAACTTTCGTTCAAGCCATTCTccttttcttctcttttcagTTGTATA
GGTTTCAAGAAGAATGTGTGGATCATCAAAATCCCTGTCATGTGTTACGT
CATCGTaagtgaatgaatgaatgaatgaatgaatgaatgaacgaatGAGT
GAGTAAGTTGGCCAATGAATGAAGGATTTTGTGCTTagataaaaaacttt
tcctaTTTCACTGTGGGCTTTTCGaagttttaatttcaatttcactGTAT
GGTGTATGATATCTCGGGTCCTTGAGGGAAATCTTTTTCGTTCATTTCAG
ACCAATTGCATACTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCCACGA
GAGGAGGAGGGaaagtcaaaacaaaagtaACAAAAGTGACATCAACAGCG
CAAAGTAAGTTTATATTAACCTTTTCGGTATTTAGTGTactagtagaggg
cattttgtaaaatcgctcgactgttttgttagaagcacttgttatacatt
tttgaaaagctaatgggtaggggaatcgaaattactatgtttccaatttt
tgagagaagagagcttcaaaaagcgcaaaaactggacaaaatagctgttt
ctggctgaaaaacacggttttcaagggttaatatctcgagttaggtacag
aaatcacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaatttcgattcccctaccccttagctttccaaaaatgtataaca
agtgcttctaacaaaacagtcaagcgattccaaaaaatcgaacaaaattc
cccctactactaTACATTATagaatgaatttctttgtattttcttaTTAT
ATTATGtttagcgaccgtagtgcagtggtagagcattcagctacggtgcg
caaggttgtgggttcaacccccagccgggtcataccaaagattcccaaaa
tggtacttgatgtctctctgcttgatgctcagcaattaagataaggatca
agggtaagttgaGCAATTCAGGGAGAAAGAGTAGCGCCCTTCCCTacttt
cgggtagatagctattgaAAGAGGGGCTCCTCCtgcgggtcgcctccgac
tgcagtCGCAGACTTATAAACTTATTAACGCTTAAGTCAGTTGCACTTAC
ACCCGATTAAAACATGGTTATGACTTTTGACTGCTTTAAACCTAAATTTC
CTTTTAGAACCTTACAATCCATTCGAACCCTTTTGATCTTGACATCGCTA
CTgggtctaccatttttgttgacCATCTTTATCGcctatgatgacgtcat
cttaaGCATGTATTTGGTCTTGAATGGACTTGCAGTGAGTATTTAAGCCT
GTAAGAAAATTATGCGGCCAACACATTTACATACATTACTATCAAAGGAG
AGAGATACTAAGAAATaccttgttggaaagataatttaaagttttaatat
ctttaaaatgaaGCAAATGGAGATGACTAATTGAAGTAACAGCGCCTCAA
AGTaggctaaaaatattttatagctacaatcctggccataatatttgaga
caaaagggaaattcccacgaaatcttatgaccacaagtattttggaagcg
ctctaaattaggttagacgaatagagttttaactctgagttttaacatta
gacttaagacttaggaccttagaatctgaggatccaaaagccccagaatg
gtccaacaatgctcagaatatagcctggaagtcaattaaccccacccgaa
tcgaaatactcgaataaatttatcaattagcccaaaaacgactttctcgc
ccgaattccaaattttgaaaaacgaggaaataagctaaattctcaatata
ttttggccagGATTGTAGCTAAGGCATTGTCAACATTTCGCGATGAATAA
AATGGAGCCCTTTTACAAGGTTGGTTGCTGattcaattaattttaaaaat
tcttgtTTTCAGGGGTTATATCTTTTGGTTGGTCAAGTCCTACGCGATGA
AGAGGTTAGGTTTCATTATTTCAAATATGTCCTACGAGATCATTTTACtg
tttaaaaatagaaaaccaAAGCATTATCAATTTTTCAATCTATCACCGTT
TTACAGGTCAAGAAGGAAATACGAAAAAGATTGCTCATTTGGAGAAAGAA
TAAGCGAGATAATGAACAAAGAGCAGACGGTGGAGTGAGACAAACTCCTT
GTTGACATGGAACTATGAGGATAACCTGCACTCAACCTTTGAGGATGAAA
AAAAAGGTGATGATTATAGCACAAAGAGTTTGTTTTTTGGGCAAAATGGT
CGCCATGACTATTTGTTTGAGGCACTTATAATTATCTAACAATTAGGAGT
AACACCTTAACGAAGGAACTTTAGCAAGAAGTCCTGTCTGAATGTGAGTG
ACCTCAGATGAAGAAAAATATGCTTTTGGCATCATGTCACCATAAACACG
GAAAAGTCGGTAACCATGACAACCATAGGAAAACTCTTTGTAAACGAGGT
CGTTGTCAACGAATAGGAGACATTGGTTTGAGAGCAATGACGTCATGAAC
ACCAGCAGCCATGGTAATGGAGGAGTCTCTACAGATTTTATAAATCCATT
GAGAAGTTATGAGGTGCTTGTATTTTAGGGAAGGTACCTGAAGTTTATTT
TTCTGATCAATGGAGGACATTGAGTGTTTAAAATGTAACTTGTTACTGTT
AGCATGATTATCTGATTAATAGTGTAATAGTATTCTGCACACTAACCATT
TTTGCACGTCAGTGAGAAGCCTGGGAACAAGTCACGTGACTGTTTGAGGT
AATTGAATGCGGGGTAGAGTAACGAGTTTCAGCAAACAAAGAAGGCAATT
TAAAAGTTTatgtaaatttcaaaatgggTATAATTATTTGTTGACGTCAT
ATGAGATAACAATGAACATTGCAAAAGTGTATCTTTGGGTACTTTCATCA
CTATAGTATGAACATTTTTAACGACATTTTTGTGAGGGGGTGGAGCTCGT
TTACCCGTTGCCGTGAAAATTGGTCCCAAATTcgaattttccttcaaaaa
gaatattttgaaagtatAAGAGTAAATAAAACGATTTATCAAAGAAGTAC
GCAACGACCATGAAAATCAACAACCACCGCAACCAATGACAGATACAACA
GAGACCAACAAAGAAAATCTACCAGTTACCAGTAAAGTTAAGATTTACTT
ACCATACGCAGGAAAACAAGGAGAGTTGATTACCAATGAACTTAAGAAAA
CTGTTAATAAAATCTTTGATAAAAAGTTAGTGACGCAAGTCACatttaaa
tcaaagaaattgagTTCTTGCTTTAATGTCAAGGACACAACCCAAACGAA
ACA

Coding sequence (CDS) from alignment at sc0000051:660092..665644+

>TCONS_00005152 ID=TCONS_00005152|Name=TCONS_00005152|organism=Clytia hemisphaerica|type=CDS|length=9720bp|location=Sequence derived from alignment at sc0000051:660092..665644+ (Clytia hemisphaerica)
CAGAGAATGGCGAAAAATTTCAACATTGCGAAGATGTTAGAAGATCCAGC
TAACATAACAACAAGCAATTCAAAAGAAGTACTGAAAACTTTCAACCGGA
GAAGCAAAGGAAAATCATGGATGTAtacttttgatgacgtcacttcaGCC
GTTAATTTGGTTTCTCTTCTGTCAGCATTATTGATATTACAAATATTGAG
GATCAAAAACACAACGAAAATCGTAATCCACAAGAATTTGATTCTTTCGT
TCGCACTCTCAATTATATCTCACAAATTTCCAAGATGGTTTTGGAATGGT
TTGGAGAGTACTTCCAACAATGGTTGCATTAGTGTCTTGTTCATATCATA
TTATACCAAATTGTGTTTGTTTTCATGGACGACGGTCGAGGGATTGAATC
TAGTGATAGTGGTTGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTATCCA
CAAATGTTCTGCTTTGGTTACGgtattcCTTTCTTGGTCACATTGCTGGT
GGGGGTGATTTTCTTCGATGATTTCAAGACCACAACTGATTGTATAGGTT
TCAAGAAGAATGTGTGGATCATCAAAATCCCTGTCATGTGTTACGTCATC
ACCAATTGCATACTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCCACGA
GAGGAGGAGGGaaagtcaaaacaaaagtaACAAAAGTGACATCAACAGCG
CAAAAACCTTACAATCCATTCGAACCCTTTTGATCTTGACATCGCTACTg
ggtctaccatttttgttgacCATCTTTATCGcctatgatgacgtcatctt
aaGCATGTATTTGGTCTTGAATGGACTTGCAGGGTTATATCTTTTGGTTG
GTCAAGTCCTACGCGATGAAGAGGTCAAGAAGGAAATACGAAAAAGATTG
CTCATTTGGAGAAAGAATAAGCGAGATAATGAACAAAGAGCAGACGGTGG
AGTGAGACAAACTCCTTGTTGACAGAGAATGGCGAAAAATTTCAACATTG
CGAAGATGTTAGAAGATCCAGCTAACATAACAACAAGCAATTCAAAAGAA
GTACTGAAAACTTTCAACCGGAGAAGCAAAGGAAAATCATGGATGTAtac
ttttgatgacgtcacttcaGCCGTTAATTTGGTTTCTCTTCTGTCAGCAT
TATTGATATTACAAATATTGAGGATCAAAAACACAACGAAAATCGTAATC
CACAAGAATTTGATTCTTTCGTTCGCACTCTCAATTATATCTCACAAATT
TCCAAGATGGTTTTGGAATGGTTTGGAGAGTACTTCCAACAATGGTTGCA
TTAGTGTCTTGTTCATATCATATTATACCAAATTGTGTTTGTTTTCATGG
ACGACGGTCGAGGGATTGAATCTAGTGATAGTGGTTGTTCTGGTTTTCAA
GTTGAAAAGTAAAGGGTATCCACAAATGTTCTGCTTTGGTTACGgtattc
CTTTCTTGGTCACATTGCTGGTGGGGGTGATTTTCTTCGATGATTTCAAG
ACCACAACTGATTGTATAGGTTTCAAGAAGAATGTGTGGATCATCAAAAT
CCCTGTCATGTGTTACGTCATCACCAATTGCATACTGGTGGGGTTGATTT
TCAGCAAGATTCTGTTCCACGAGAGGAGGAGGGaaagtcaaaacaaaagt
aACAAAAGTGACATCAACAGCGCAAAAACCTTACAATCCATTCGAACCCT
TTTGATCTTGACATCGCTACTgggtctaccatttttgttgacCATCTTTA
TCGcctatgatgacgtcatcttaaGCATGTATTTGGTCTTGAATGGACTT
GCAGGGTTATATCTTTTGGTTGGTCAAGTCCTACGCGATGAAGAGGTCAA
GAAGGAAATACGAAAAAGATTGCTCATTTGGAGAAAGAATAAGCGAGATA
ATGAACAAAGAGCAGACGGTGGAGTGAGACAAACTCCTTGTTGACAGAGA
ATGGCGAAAAATTTCAACATTGCGAAGATGTTAGAAGATCCAGCTAACAT
AACAACAAGCAATTCAAAAGAAGTACTGAAAACTTTCAACCGGAGAAGCA
AAGGAAAATCATGGATGTAtacttttgatgacgtcacttcaGCCGTTAAT
TTGGTTTCTCTTCTGTCAGCATTATTGATATTACAAATATTGAGGATCAA
AAACACAACGAAAATCGTAATCCACAAGAATTTGATTCTTTCGTTCGCAC
TCTCAATTATATCTCACAAATTTCCAAGATGGTTTTGGAATGGTTTGGAG
AGTACTTCCAACAATGGTTGCATTAGTGTCTTGTTCATATCATATTATAC
CAAATTGTGTTTGTTTTCATGGACGACGGTCGAGGGATTGAATCTAGTGA
TAGTGGTTGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTATCCACAAATG
TTCTGCTTTGGTTACGgtattcCTTTCTTGGTCACATTGCTGGTGGGGGT
GATTTTCTTCGATGATTTCAAGACCACAACTGATTGTATAGGTTTCAAGA
AGAATGTGTGGATCATCAAAATCCCTGTCATGTGTTACGTCATCACCAAT
TGCATACTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCCACGAGAGGAG
GAGGGaaagtcaaaacaaaagtaACAAAAGTGACATCAACAGCGCAAAAA
CCTTACAATCCATTCGAACCCTTTTGATCTTGACATCGCTACTgggtcta
ccatttttgttgacCATCTTTATCGcctatgatgacgtcatcttaaGCAT
GTATTTGGTCTTGAATGGACTTGCAGGGTTATATCTTTTGGTTGGTCAAG
TCCTACGCGATGAAGAGGTCAAGAAGGAAATACGAAAAAGATTGCTCATT
TGGAGAAAGAATAAGCGAGATAATGAACAAAGAGCAGACGGTGGAGTGAG
ACAAACTCCTTGTTGACAGAGAATGGCGAAAAATTTCAACATTGCGAAGA
TGTTAGAAGATCCAGCTAACATAACAACAAGCAATTCAAAAGAAGTACTG
AAAACTTTCAACCGGAGAAGCAAAGGAAAATCATGGATGTAtacttttga
tgacgtcacttcaGCCGTTAATTTGGTTTCTCTTCTGTCAGCATTATTGA
TATTACAAATATTGAGGATCAAAAACACAACGAAAATCGTAATCCACAAG
AATTTGATTCTTTCGTTCGCACTCTCAATTATATCTCACAAATTTCCAAG
ATGGTTTTGGAATGGTTTGGAGAGTACTTCCAACAATGGTTGCATTAGTG
TCTTGTTCATATCATATTATACCAAATTGTGTTTGTTTTCATGGACGACG
GTCGAGGGATTGAATCTAGTGATAGTGGTTGTTCTGGTTTTCAAGTTGAA
AAGTAAAGGGTATCCACAAATGTTCTGCTTTGGTTACGgtattcCTTTCT
TGGTCACATTGCTGGTGGGGGTGATTTTCTTCGATGATTTCAAGACCACA
ACTGATTGTATAGGTTTCAAGAAGAATGTGTGGATCATCAAAATCCCTGT
CATGTGTTACGTCATCACCAATTGCATACTGGTGGGGTTGATTTTCAGCA
AGATTCTGTTCCACGAGAGGAGGAGGGaaagtcaaaacaaaagtaACAAA
AGTGACATCAACAGCGCAAAAACCTTACAATCCATTCGAACCCTTTTGAT
CTTGACATCGCTACTgggtctaccatttttgttgacCATCTTTATCGcct
atgatgacgtcatcttaaGCATGTATTTGGTCTTGAATGGACTTGCAGGG
TTATATCTTTTGGTTGGTCAAGTCCTACGCGATGAAGAGGTCAAGAAGGA
AATACGAAAAAGATTGCTCATTTGGAGAAAGAATAAGCGAGATAATGAAC
AAAGAGCAGACGGTGGAGTGAGACAAACTCCTTGTTGACAGAGAATGGCG
AAAAATTTCAACATTGCGAAGATGTTAGAAGATCCAGCTAACATAACAAC
AAGCAATTCAAAAGAAGTACTGAAAACTTTCAACCGGAGAAGCAAAGGAA
AATCATGGATGTAtacttttgatgacgtcacttcaGCCGTTAATTTGGTT
TCTCTTCTGTCAGCATTATTGATATTACAAATATTGAGGATCAAAAACAC
AACGAAAATCGTAATCCACAAGAATTTGATTCTTTCGTTCGCACTCTCAA
TTATATCTCACAAATTTCCAAGATGGTTTTGGAATGGTTTGGAGAGTACT
TCCAACAATGGTTGCATTAGTGTCTTGTTCATATCATATTATACCAAATT
GTGTTTGTTTTCATGGACGACGGTCGAGGGATTGAATCTAGTGATAGTGG
TTGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTATCCACAAATGTTCTGC
TTTGGTTACGgtattcCTTTCTTGGTCACATTGCTGGTGGGGGTGATTTT
CTTCGATGATTTCAAGACCACAACTGATTGTATAGGTTTCAAGAAGAATG
TGTGGATCATCAAAATCCCTGTCATGTGTTACGTCATCACCAATTGCATA
CTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCCACGAGAGGAGGAGGGa
aagtcaaaacaaaagtaACAAAAGTGACATCAACAGCGCAAAAACCTTAC
AATCCATTCGAACCCTTTTGATCTTGACATCGCTACTgggtctaccattt
ttgttgacCATCTTTATCGcctatgatgacgtcatcttaaGCATGTATTT
GGTCTTGAATGGACTTGCAGGGTTATATCTTTTGGTTGGTCAAGTCCTAC
GCGATGAAGAGGTCAAGAAGGAAATACGAAAAAGATTGCTCATTTGGAGA
AAGAATAAGCGAGATAATGAACAAAGAGCAGACGGTGGAGTGAGACAAAC
TCCTTGTTGACAGAGAATGGCGAAAAATTTCAACATTGCGAAGATGTTAG
AAGATCCAGCTAACATAACAACAAGCAATTCAAAAGAAGTACTGAAAACT
TTCAACCGGAGAAGCAAAGGAAAATCATGGATGTAtacttttgatgacgt
cacttcaGCCGTTAATTTGGTTTCTCTTCTGTCAGCATTATTGATATTAC
AAATATTGAGGATCAAAAACACAACGAAAATCGTAATCCACAAGAATTTG
ATTCTTTCGTTCGCACTCTCAATTATATCTCACAAATTTCCAAGATGGTT
TTGGAATGGTTTGGAGAGTACTTCCAACAATGGTTGCATTAGTGTCTTGT
TCATATCATATTATACCAAATTGTGTTTGTTTTCATGGACGACGGTCGAG
GGATTGAATCTAGTGATAGTGGTTGTTCTGGTTTTCAAGTTGAAAAGTAA
AGGGTATCCACAAATGTTCTGCTTTGGTTACGgtattcCTTTCTTGGTCA
CATTGCTGGTGGGGGTGATTTTCTTCGATGATTTCAAGACCACAACTGAT
TGTATAGGTTTCAAGAAGAATGTGTGGATCATCAAAATCCCTGTCATGTG
TTACGTCATCACCAATTGCATACTGGTGGGGTTGATTTTCAGCAAGATTC
TGTTCCACGAGAGGAGGAGGGaaagtcaaaacaaaagtaACAAAAGTGAC
ATCAACAGCGCAAAAACCTTACAATCCATTCGAACCCTTTTGATCTTGAC
ATCGCTACTgggtctaccatttttgttgacCATCTTTATCGcctatgatg
acgtcatcttaaGCATGTATTTGGTCTTGAATGGACTTGCAGGGTTATAT
CTTTTGGTTGGTCAAGTCCTACGCGATGAAGAGGTCAAGAAGGAAATACG
AAAAAGATTGCTCATTTGGAGAAAGAATAAGCGAGATAATGAACAAAGAG
CAGACGGTGGAGTGAGACAAACTCCTTGTTGACAGAGAATGGCGAAAAAT
TTCAACATTGCGAAGATGTTAGAAGATCCAGCTAACATAACAACAAGCAA
TTCAAAAGAAGTACTGAAAACTTTCAACCGGAGAAGCAAAGGAAAATCAT
GGATGTAtacttttgatgacgtcacttcaGCCGTTAATTTGGTTTCTCTT
CTGTCAGCATTATTGATATTACAAATATTGAGGATCAAAAACACAACGAA
AATCGTAATCCACAAGAATTTGATTCTTTCGTTCGCACTCTCAATTATAT
CTCACAAATTTCCAAGATGGTTTTGGAATGGTTTGGAGAGTACTTCCAAC
AATGGTTGCATTAGTGTCTTGTTCATATCATATTATACCAAATTGTGTTT
GTTTTCATGGACGACGGTCGAGGGATTGAATCTAGTGATAGTGGTTGTTC
TGGTTTTCAAGTTGAAAAGTAAAGGGTATCCACAAATGTTCTGCTTTGGT
TACGgtattcCTTTCTTGGTCACATTGCTGGTGGGGGTGATTTTCTTCGA
TGATTTCAAGACCACAACTGATTGTATAGGTTTCAAGAAGAATGTGTGGA
TCATCAAAATCCCTGTCATGTGTTACGTCATCACCAATTGCATACTGGTG
GGGTTGATTTTCAGCAAGATTCTGTTCCACGAGAGGAGGAGGGaaagtca
aaacaaaagtaACAAAAGTGACATCAACAGCGCAAAAACCTTACAATCCA
TTCGAACCCTTTTGATCTTGACATCGCTACTgggtctaccatttttgttg
acCATCTTTATCGcctatgatgacgtcatcttaaGCATGTATTTGGTCTT
GAATGGACTTGCAGGGTTATATCTTTTGGTTGGTCAAGTCCTACGCGATG
AAGAGGTCAAGAAGGAAATACGAAAAAGATTGCTCATTTGGAGAAAGAAT
AAGCGAGATAATGAACAAAGAGCAGACGGTGGAGTGAGACAAACTCCTTG
TTGACAGAGAATGGCGAAAAATTTCAACATTGCGAAGATGTTAGAAGATC
CAGCTAACATAACAACAAGCAATTCAAAAGAAGTACTGAAAACTTTCAAC
CGGAGAAGCAAAGGAAAATCATGGATGTAtacttttgatgacgtcacttc
aGCCGTTAATTTGGTTTCTCTTCTGTCAGCATTATTGATATTACAAATAT
TGAGGATCAAAAACACAACGAAAATCGTAATCCACAAGAATTTGATTCTT
TCGTTCGCACTCTCAATTATATCTCACAAATTTCCAAGATGGTTTTGGAA
TGGTTTGGAGAGTACTTCCAACAATGGTTGCATTAGTGTCTTGTTCATAT
CATATTATACCAAATTGTGTTTGTTTTCATGGACGACGGTCGAGGGATTG
AATCTAGTGATAGTGGTTGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTA
TCCACAAATGTTCTGCTTTGGTTACGgtattcCTTTCTTGGTCACATTGC
TGGTGGGGGTGATTTTCTTCGATGATTTCAAGACCACAACTGATTGTATA
GGTTTCAAGAAGAATGTGTGGATCATCAAAATCCCTGTCATGTGTTACGT
CATCACCAATTGCATACTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCC
ACGAGAGGAGGAGGGaaagtcaaaacaaaagtaACAAAAGTGACATCAAC
AGCGCAAAAACCTTACAATCCATTCGAACCCTTTTGATCTTGACATCGCT
ACTgggtctaccatttttgttgacCATCTTTATCGcctatgatgacgtca
tcttaaGCATGTATTTGGTCTTGAATGGACTTGCAGGGTTATATCTTTTG
GTTGGTCAAGTCCTACGCGATGAAGAGGTCAAGAAGGAAATACGAAAAAG
ATTGCTCATTTGGAGAAAGAATAAGCGAGATAATGAACAAAGAGCAGACG
GTGGAGTGAGACAAACTCCTTGTTGACAGAGAATGGCGAAAAATTTCAAC
ATTGCGAAGATGTTAGAAGATCCAGCTAACATAACAACAAGCAATTCAAA
AGAAGTACTGAAAACTTTCAACCGGAGAAGCAAAGGAAAATCATGGATGT
AtacttttgatgacgtcacttcaGCCGTTAATTTGGTTTCTCTTCTGTCA
GCATTATTGATATTACAAATATTGAGGATCAAAAACACAACGAAAATCGT
AATCCACAAGAATTTGATTCTTTCGTTCGCACTCTCAATTATATCTCACA
AATTTCCAAGATGGTTTTGGAATGGTTTGGAGAGTACTTCCAACAATGGT
TGCATTAGTGTCTTGTTCATATCATATTATACCAAATTGTGTTTGTTTTC
ATGGACGACGGTCGAGGGATTGAATCTAGTGATAGTGGTTGTTCTGGTTT
TCAAGTTGAAAAGTAAAGGGTATCCACAAATGTTCTGCTTTGGTTACGgt
attcCTTTCTTGGTCACATTGCTGGTGGGGGTGATTTTCTTCGATGATTT
CAAGACCACAACTGATTGTATAGGTTTCAAGAAGAATGTGTGGATCATCA
AAATCCCTGTCATGTGTTACGTCATCACCAATTGCATACTGGTGGGGTTG
ATTTTCAGCAAGATTCTGTTCCACGAGAGGAGGAGGGaaagtcaaaacaa
aagtaACAAAAGTGACATCAACAGCGCAAAAACCTTACAATCCATTCGAA
CCCTTTTGATCTTGACATCGCTACTgggtctaccatttttgttgacCATC
TTTATCGcctatgatgacgtcatcttaaGCATGTATTTGGTCTTGAATGG
ACTTGCAGGGTTATATCTTTTGGTTGGTCAAGTCCTACGCGATGAAGAGG
TCAAGAAGGAAATACGAAAAAGATTGCTCATTTGGAGAAAGAATAAGCGA
GATAATGAACAAAGAGCAGACGGTGGAGTGAGACAAACTCCTTGTTGACA
GAGAATGGCGAAAAATTTCAACATTGCGAAGATGTTAGAAGATCCAGCTA
ACATAACAACAAGCAATTCAAAAGAAGTACTGAAAACTTTCAACCGGAGA
AGCAAAGGAAAATCATGGATGTAtacttttgatgacgtcacttcaGCCGT
TAATTTGGTTTCTCTTCTGTCAGCATTATTGATATTACAAATATTGAGGA
TCAAAAACACAACGAAAATCGTAATCCACAAGAATTTGATTCTTTCGTTC
GCACTCTCAATTATATCTCACAAATTTCCAAGATGGTTTTGGAATGGTTT
GGAGAGTACTTCCAACAATGGTTGCATTAGTGTCTTGTTCATATCATATT
ATACCAAATTGTGTTTGTTTTCATGGACGACGGTCGAGGGATTGAATCTA
GTGATAGTGGTTGTTCTGGTTTTCAAGTTGAAAAGTAAAGGGTATCCACA
AATGTTCTGCTTTGGTTACGgtattcCTTTCTTGGTCACATTGCTGGTGG
GGGTGATTTTCTTCGATGATTTCAAGACCACAACTGATTGTATAGGTTTC
AAGAAGAATGTGTGGATCATCAAAATCCCTGTCATGTGTTACGTCATCAC
CAATTGCATACTGGTGGGGTTGATTTTCAGCAAGATTCTGTTCCACGAGA
GGAGGAGGGaaagtcaaaacaaaagtaACAAAAGTGACATCAACAGCGCA
AAAACCTTACAATCCATTCGAACCCTTTTGATCTTGACATCGCTACTggg
tctaccatttttgttgacCATCTTTATCGcctatgatgacgtcatcttaa
GCATGTATTTGGTCTTGAATGGACTTGCAGGGTTATATCTTTTGGTTGGT
CAAGTCCTACGCGATGAAGAGGTCAAGAAGGAAATACGAAAAAGATTGCT
CATTTGGAGAAAGAATAAGCGAGATAATGAACAAAGAGCAGACGGTGGAG
TGAGACAAACTCCTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002937XLOC_002937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005152-proteinTCONS_00005152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005152-exon-sc0000051-1491911889:660092..660136TCONS_00005152-exon-sc0000051-1491911889:660092..660136Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:660092..660136TCONS_00005152-exon-sc0000051-1510915933:660092..660136Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:660092..660136TCONS_00005152-exon-sc0000051-1575043694:660092..660136Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:660570..660724TCONS_00005152-exon-sc0000051-1491911889:660570..660724Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:660570..660724TCONS_00005152-exon-sc0000051-1510915933:660570..660724Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:660570..660724TCONS_00005152-exon-sc0000051-1575043694:660570..660724Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:660880..660997TCONS_00005152-exon-sc0000051-1491911889:660880..660997Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:660880..660997TCONS_00005152-exon-sc0000051-1510915933:660880..660997Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:660880..660997TCONS_00005152-exon-sc0000051-1575043694:660880..660997Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:661247..661400TCONS_00005152-exon-sc0000051-1491911889:661247..661400Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:661247..661400TCONS_00005152-exon-sc0000051-1510915933:661247..661400Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:661247..661400TCONS_00005152-exon-sc0000051-1575043694:661247..661400Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:661771..661837TCONS_00005152-exon-sc0000051-1491911889:661771..661837Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:661771..661837TCONS_00005152-exon-sc0000051-1510915933:661771..661837Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:661771..661837TCONS_00005152-exon-sc0000051-1575043694:661771..661837Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:662035..662095TCONS_00005152-exon-sc0000051-1491911889:662035..662095Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:662035..662095TCONS_00005152-exon-sc0000051-1510915933:662035..662095Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:662035..662095TCONS_00005152-exon-sc0000051-1575043694:662035..662095Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:662292..662395TCONS_00005152-exon-sc0000051-1491911889:662292..662395Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:662292..662395TCONS_00005152-exon-sc0000051-1510915933:662292..662395Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:662292..662395TCONS_00005152-exon-sc0000051-1575043694:662292..662395Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:663499..663625TCONS_00005152-exon-sc0000051-1491911889:663499..663625Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:663499..663625TCONS_00005152-exon-sc0000051-1510915933:663499..663625Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:663499..663625TCONS_00005152-exon-sc0000051-1575043694:663499..663625Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:664254..664295TCONS_00005152-exon-sc0000051-1491911889:664254..664295Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:664254..664295TCONS_00005152-exon-sc0000051-1510915933:664254..664295Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:664254..664295TCONS_00005152-exon-sc0000051-1575043694:664254..664295Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1491911889:664398..665644TCONS_00005152-exon-sc0000051-1491911889:664398..665644Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1510915933:664398..665644TCONS_00005152-exon-sc0000051-1510915933:664398..665644Clytia hemisphaericaexon
TCONS_00005152-exon-sc0000051-1575043694:664398..665644TCONS_00005152-exon-sc0000051-1575043694:664398..665644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:660092..665644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.020565	0.0572392	0.0470803	0.0547371	0.0559474	0.120712	0.0432702	0.112853	0.170511	0.313204	0.20822	0.166685	0.364876	0.307407	0.389151	0.209365	0.292084	0.532441	0.525314	0.405127	0.708319	1.61457	1.44098	0.356388	0.163006	0.0206057	0.020994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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