TCONS_00005148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005148
Unique NameTCONS_00005148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005148 ID=TCONS_00005148|Name=TCONS_00005148|organism=Clytia hemisphaerica|type=transcript|length=2472bp
GATATATTTAAAATGTTGGATGATGAGCTGAGAAATCAGTTTTAAATGGT
CGTTGAGTTGTTGAGTTATGTAAACTCTTGTCAAGTGGAGGTCATATTTC
AACAGCTTTACAAACATTTGagcaaattctttaaaaaaaagttgatgttG
ATTTTGTAGTAAGGTGAAAGGGAAAGTTGGcctaaagaaatttttgttgt
tgcGTGAATTTGTTTGAAgtgaatttgttgaaaaatgaagattttgtcGA
AGCATAAGAAGAAGAATGATGTGAAAACGAAGGATGGATTTGTCCAAGAC
TCTATTGGGATGATGACTGGCAAAACACTTGGTATCACCGAATCCGCAAG
TCTCTTCAACATGAAGGAGTTTTATAAGTGGGAATTCAACGATGACGAAG
AATCAGACGACCGCCACATCATTCATAAATGGTCGCGCGACCGCATCAAG
AAAATGCACGGATTACGAAAATCGTACATGAGCTTTTTGGTGTATTCATT
CCATTTAACAACATTGAAAAGTTTCATtgagaatttcaatttcatggtGA
TCCTTCAGATGATCTTAGCTGCTGGTGCCGTTTGGTTGTTCGATTATTTT
GACATTTATTTCAATTTCCATATCGGACTGTTTGTTTCACCCATCGTATT
TCCTCTGGCTTTCTCAATAAACACTGACTTTCAACGGAGAGAAAAGGTAT
TGGACGATTTAGCTAACTTTAAATCTTCATCCATGGTTTTCTTCTTTTGT
ATGAGGGAATGGAGAAGTGCTTCAGGTTTGGAGGAAGCTTGGTTAAAAGA
CATCAAACAAAAGGTCCATAGTATGATGTTCAACTTGAGAGAATATTTAT
TGACAGATAAAATGAAAAGACGTGACATTATAGCACGCATAATGTATGAG
GACTTCAGTGATATTTCACAATTGATCGAGAAAGTTCGCGCCAGCAAATT
ACCCGCCAATCCTGCCATTGTATCAAGGTCCGTACATTTATTGAACATGT
TATGTCTGTCATTCGAACGTTTACGAGTCATTCGAGAATATCGATCTCCA
AGATCCATTCGATCTTTCAACAAAGTGTTAATTTTACTTTTACCCATAAT
CCTTTGCCCATATTTCGTTTATTTGGGACGATTGGGTAAGAAGGAGATTA
GCATCGGAAACTGGGGGCCTTACTACATCGCAGTGCTCGTTGCAACAGTA
TTCGGTGCACTACAAGGAGTCCAAGACAAATTGGACGACCCTTTTGATGG
AATGTCAGAGGACGATATAAACTTGGACACAATTGATGAATGGACTTTCA
ACTCCTTGAAGTCAGCTGCCGAGAGAAGCATTTATACTATTGGTAGATTT
CAAGTGAAGAAAGAACAGACCGAGAAACCACGATCGAAGAGTATTGTTCA
AATGTTACACGAGTTAGAAGCTGAAGAATGCCCGGAGTCTGACTATGAAG
CTCCAATTCTGAAAGCGTCGAAAAGCCCGTTTAATAATCGGAAAACAGGG
AAAAGCcttttcagaaaaagttttaatcaaaaatcaaagagaCGCGCGGT
CGTTCGAAGTCAGACGTTTACCGGCTCTGATAAATGGAAGGAAGGACGTA
AAAGGTTCAGTTCGACAACTTCACAAGCGTGGGCCCCTGAAAATCACCCG
TATGCAGAAGTTCTTGAGAAGATGTCAGGTGACAGTCGTATTGAACGTAA
ACACACAGTACGTCACCACCCGATCGCAGCACGGCAACAAAGTCATGAGC
CGCATCCCACACCGAAAGATACGGACCTTCAACGGAAAAGCGTCTCCGAA
GCTTCTTTAAACACGATTCTCAAAAACGAAAATGACCAAGACTCAGATAC
AGGTGAACATCGAAAGAGTTTGGGTGTAAAGTTTCAAAACGAGACTGAGT
TATTCACTTATGACGAACGAAATAGTTTGAACAGTGGTTCCAACAGTCGG
CTACCTCTtctaaatgaagaaaaagagaaagaagaacAGGACAATCGCTT
CAAAACGACGAAACTCGAAATGTCACCTTTGAAAAACGGGGCACGATTTC
ATAAGAGTGTAGTACCCTCTATGAGCGTGAATAGCGCTGATGATGAACTA
ACGCAAGTCATTGTGGATTCCAGCCCTCCAACTAAAGAAGACAATGTCTT
CGCttagatatttttttgaatttcttagtTGACCTAAGTCCTTTATTTGG
AATGTTTTTGAGcggtaattttgaattttgagaaGGTATGCTCCTTGTGA
GAATTTTCACTTGTTTCTTGTTGTACTTCACTTGCAAGCAAAGGATTTTG
GATTTCTTAACCCGACAAACCGTAGTAACCTACTTATTCAAAACCTTTCA
AGTCTGAACGAGTctgaaaaaatttcttcctcACAGTTCACATCTTTTTG
ACGGTGGTATCAAAACCACAAAAAATTAGTTTATTAATAAATTTCTTTTC
CAAATACCACCTTGTTTGTATA
Run BLAST on NCBI

transcript from alignment at sc0000051:639563..643634+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005148 ID=TCONS_00005148|Name=TCONS_00005148|organism=Clytia hemisphaerica|type=transcript|length=4072bp|location=Sequence derived from alignment at sc0000051:639563..643634+ (Clytia hemisphaerica)
GATATATTTAAAATGTTGGATGATGAGCTGAGAAATCAGTTTTAAATGGT
CGTTGAGTTGTTGAGTTATGTAAACTCTTGTCAAGTGGAGGTCATATTTC
AACAGCTTTACAAACATTTGagcaaattctttaaaaaaaagttgatgttG
ATTTTGTAGTAAGGTGAAAGGGAAAGTTGGcctaaagaaatttttgttgt
tgcGTGAATTTGTTTGAAgtgaatttgttgaaaaatgaagattttgtcGA
AGCATAAGAAGAAGAATGATGTGAAAACGAAGGATGGATTTGTCCAAGAC
TCTATTGGGATGTAAGTTGTCAATCAATGAAacgattatgacgtcactca
tccTTTTGGCTTCCGTAATTTTTAATGACGTTTCTTGTCATTAAGAAATT
TAACGAAGAAAAATTCGTCCTCTaaacaatttatttttgaaaattgtttt
tttgaagataGCATTGTCATTCTTGCTTTAGCAGCGATGGTTTATGTCTT
TCAAGAAAATTTAGTTCGAGAGGGAAAATAACCGTAATTTTTTCTTGGTT
CAAAATTTCgtcagaaaataaaagaaagaccaTTGAATATTAGTttatat
ttaaaggttttattgttattatttacATTTTGTGACGTTGAGTTGATGAT
AATTAGGACCAGACATTTGTTACTAGGTCAAGAGCTTAGTTTTAAGGGCT
TAGAGCACGAAATTAGATTATAATTAATGTTTTTGTCTTGAGAAAGACGT
GAATAAGCCCGTATAAGGAATTTTTGTTTATCGAAGGATCTAAGATAAAC
AGACGAGCATAGCGTTCTATTTGGGTTTTATTGATCTGATTTGATGATAA
GACGTGATAAGTTCGTTCGCTATGTAGAAGTATCGCTAAGGAAGAGGTTT
CGAAGTGTTGTCAAGAAGCAAAAACAAGGAAAACTTTCTATGATCTGTGA
TTCTGAAACGTTCTAAAATCAAGTGGTTTATGTCGAGATTTCAAAATGGA
TATTAGCAGGCCGACGTCAAAATATTTCGATTTCGATCACTTTATAGGGT
ATGTAAGAAAAAGCATGGTTGTTGACTATGTAAAAGAGAAAGTATTTTTA
ATTAACTTTCGATCAAACAATCTACCGGAATCTGCTTATATTTCAATGAA
ATGTGATTTGTCTTGTGAGTTCAAGTTGATATCTTGTAGTAGAGATCAGA
TAGTTGTGGCTGTTTAGTTTGGAGTGAGAGTGAGGCAATCGATACTACTG
ttttggagaattttttcaGGGAACTATGCAAATAAAGGAAGATAATGAGG
CTGAAAGTCCAAATCAAACCTTTCAGATTATATTCAGTTAACACGTTAAT
GTGAAAAACAGTACTTTTCGAATATCAAAATACATTGTAAACTTTAAACC
AGTTCTTAAAAGTTAATTTGAACACACTTGTTGAAGGAgggtttttcaga
aaattatccAACCTGaatttttgttgaaagtttGTGATAGATAGCCATGA
GGAAGTAAGTGATTACTGTGTGTTCGACTTTGGATCGTAAGAAAGTGTTT
GATGGGAAAATAGAAAGATTATTGACTTTCACAGCAAAGAGATACTTGAA
AAAATAGCGGAAAATGCCTTTCAGTCAAATTTGTACACcgacttttttct
attgtttatatgTGACCTTAAAACGTCAAAGTAAACCTCAAACTGAGAAG
GTTGGGATCTAGCTAAAGGGAAATGCATATAATCTGGACAAAAGCAAAAG
GATCAGTATAAATTCAGGTCTTATTGAAATTATGTTGTGTCTTCTGAAAT
GAGCTTGGTACTGAACAAAATGTATTTATTTCTTGATAGGATGACTGGCA
AAACCCTTGGTATCACCGAATCTNGTTTGGTACTGAACAAAATGTATTTG
TTTCTTGATAGGATGACTGGCAAAACACTTGGTATCACCGAATCCGCAAG
TCTCTTCAACATGAAGGAGTTTTATAAGTGGGAATTCAACGATGACGAAG
AATCAGACGACCGCCACATCATTCATAAATGGTCGCGCGACCGCATCAAG
AAAATGCACGGATTACGAAAATCGTACATGAGCTTTTTGGTGTATTCATT
CCATTTAACAACATTGAAAAGTTTCATtgagaatttcaatttcatggtGA
TCCTTCAGATGATCTTAGCTGCTGGTGCCGTTTGGTTGTTCGATTATTTT
GACATTTATTTCAATTTCCATATCGGACTGTTTGTTTCACCCATCGTATT
TCCTCTGGCTTTCTCAATAAACACTGACTTTCAACGGAGAGAAAAGGTAT
TGGACGATTTAGCTAACTTTAAATCTTCATCCATGGTTTTCTTCTTTTGT
ATGAGGGAATGGAGAAGTGCTTCAGGTTTGGAGGAAGCTTGGTTAAAAGA
CATCAAACAAAAGGTCCATAGTATGATGTTCAACTTGAGAGAATATTTAT
TGACAGATAAAATGAAAAGACGTGACATTATAGCACGCATAATGTATGAG
GACTTCAGTGATATTTCACAATTGATCGAGAAAGTTCGCGCCAGCAAATT
ACCCGCCAATCCTGCCATTGTATCAAGGTCCGTACATTTATTGAACATGT
TATGTCTGTCATTCGAACGTTTACGAGTCATTCGAGAATATCGATCTCCA
AGATCCATTCGATCTTTCAACAAAGTGTTAATTTTACTTTTACCCATAAT
CCTTTGCCCATATTTCGTTTATTTGGGACGATTGGGTAAGAAGGAGATTA
GCATCGGAAACTGGGGGCCTTACTACATCGCAGTGCTCGTTGCAACAGTA
TTCGGTGCACTACAAGGAGTCCAAGACAAATTGGACGACCCTTTTGATGG
AATGTCAGAGGACGATATAAACTTGGACACAATTGATGAATGGACTTTCA
ACTCCTTGAAGTCAGCTGCCGAGAGAAGCATTTATACTATTGGTAGATTT
CAAGTGAAGAAAGAACAGACCGAGAAACCACGATCGAAGAGTATTGTTCA
AATGTTACACGAGTTAGAAGCTGAAGAATGCCCGGAGTCTGACTATGAAG
CTCCAATTCTGAAAGCGTCGAAAAGCCCGTTTAATAATCGGAAAACAGGG
AAAAGCcttttcagaaaaagttttaatcaaaaatcaaagagaCGCGCGGT
CGTTCGAAGTCAGACGTTTACCGGCTCTGATAAATGGAAGGAAGGACGTA
AAAGGTTCAGTTCGACAACTTCACAAGCGTGGGCCCCTGAAAATCACCCG
TATGCAGAAGTTCTTGAGAAGATGTCAGGTGACAGTCGTATTGAACGTAA
ACACACAGTACGTCACCACCCGATCGCAGCACGGCAACAAAGTCATGAGC
CGCATCCCACACCGAAAGATACGGACCTTCAACGGAAAAGCGTCTCCGAA
GCTTCTTTAAACACGATTCTCAAAAACGAAAATGACCAAGACTCAGATAC
AGGTGAACATCGAAAGAGTTTGGGTGTAAAGTTTCAAAACGAGACTGAGT
TATTCACTTATGACGAACGAAATAGTTTGAACAGTGGTTCCAACAGTCGG
CTACCTCTtctaaatgaagaaaaagagaaagaagaacAGGACAATCGCTT
CAAAACGACGAAACTCGAAATGTCACCTTTGAAAAACGGGGCACGATTTC
ATAAGAGTGTAGTACCCTCTATGAGCGTGAATAGCGCTGATGATGAACTA
ACGCAAGTCATTGTGGATTCCAGCCCTCCAACTAAAGAAGACAATGTCTT
CGCttagatatttttttgaatttcttagtTGACCTAAGTCCTTTATTTGG
AATGTTTTTGAGcggtaattttgaattttgagaaGGTATGCTCCTTGTGA
GAATTTTCACTTGTTTCTTGTTGTACTTCACTTGCAAGCAAAGGATTTTG
GATTTCTTAACCCGACAAACCGTAGTAACCTACTTATTCAAAACCTTTCA
AGTCTGAACGAGTctgaaaaaatttcttcctcACAGTTCACATCTTTTTG
ACGGTGGTATCAAAACCACAAAAAATTAGTTTATTAATAAATTTCTTTTC
CAAATACCACCTTGTTTGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002935XLOC_002935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005148-exon-sc0000051-1491911889:639563..639873TCONS_00005148-exon-sc0000051-1491911889:639563..639873Clytia hemisphaericaexon
TCONS_00005148-exon-sc0000051-1510915933:639563..639873TCONS_00005148-exon-sc0000051-1510915933:639563..639873Clytia hemisphaericaexon
TCONS_00005148-exon-sc0000051-1575043694:639563..639873TCONS_00005148-exon-sc0000051-1575043694:639563..639873Clytia hemisphaericaexon
TCONS_00005148-exon-sc0000051-1491911889:641474..643634TCONS_00005148-exon-sc0000051-1491911889:641474..643634Clytia hemisphaericaexon
TCONS_00005148-exon-sc0000051-1510915933:641474..643634TCONS_00005148-exon-sc0000051-1510915933:641474..643634Clytia hemisphaericaexon
TCONS_00005148-exon-sc0000051-1575043694:641474..643634TCONS_00005148-exon-sc0000051-1575043694:641474..643634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:639563..643634 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104502	0	0	0	0.092967	0.186288	0	0	0	0.383741	0	2.77029	3.32882	3.45922	5.95407	3.00132	1.2539	0.365198	0.976948	1.83832	1.97143	1.37274	1.13541	2.83579	2.81323	0.999994	0.215493	1.06026	0.473748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top