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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005134 ID=TCONS_00005134|Name=TCONS_00005134|organism=Clytia hemisphaerica|type=transcript|length=4408bpRun BLAST on NCBI transcript from alignment at sc0000051:385697..419649+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005134 ID=TCONS_00005134|Name=TCONS_00005134|organism=Clytia hemisphaerica|type=transcript|length=33953bp|location=Sequence derived from alignment at sc0000051:385697..419649+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005134 vs. Swiss-Prot (Human)
Match: MRP3 (Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3) HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0 Identity = 401/950 (42.21%), Postives = 575/950 (60.53%), Query Frame = 1
Query: 121 SSAHSSSTDPQQPAPPKDDEDV---EYSYKPSLSKVFFRCFGMATFIAXXXXXXXXXXXXXXXXXXXXXINFVENEDEKEYWGYVYAAILFLLITIQSFFLQQYFTRAYTEAMHVKTAVLGLVYRKMFKLNSFGRRNFTAGGMVNLMSVDAQKCHDLFIFLAITWSGPFQIIVSLVALYFLMGWSVLAGFGLLVLLIPLNMFITNREKMYHSKQMKLKDERSKLMNEILAGIKIIKMYAWEDSFLAKVTGFRNKELKQLRNSKLLLANTGFTISCTPFLVSIVTFAAYVYLAEEE-LTAEKAFVSIALFNIMRFPLFILPILVSNIVAYKVSVKRITKFLKGEELDAEDVQRLSNDHQGPAVEVIEGSFSWDHD-KPLLREIDLSIPKGSLVAIVGQVGTGKSSLLSAILGEIHRVGGKVKTSGKIAYVAQQPWIQNKTVRENILFNKKFKQEKYSNIIDACALKSDLELLQMGDLTEIGEKGINLSGGQKQRVALARAIYNNADIYLMDDPLSAVDSHVGKHIFESVIGPKGILKNKTRVLVTHNLSFLPKVDRIIVLKDHSISESGSYKDLLDEGNDFAEFLKTYHXXXXXXXXXDQKKDLKRENSNEPTIFLNKESDNLALPDVXXXXXXXXXXXTNGEDDLYFNDKRLVSASSYSIYDELDGGXXXXXXXXXXXXXXXXXXXXXXXXXXNAGTIIHEEKSETGTVNRSVFLHYFKSLGIFTTIFIFLAGFGNEAALIGSRIWLAHWSSSTANMTDSKRD---YFIGIYGGIGLSQAISSLALSYGVAVGSIHASRILHTKLLVRILHCPMSFFETTPIGRVVNRFVKDINSVDEQIPKSFKSFITTFMSLLGTVFIISYSTPIFLAVLLPIAILYFMTQRFYVPSSRQLKRILSVRRSPIFNHYFESINGASTIRAFRKVDEFANENESKIDQLQAAHYPTFHCDR 2946
++ H +S P + A +D+ + KPS K FG + I+ +KL+ D+L ++P LL LI F+ N +WG++ A ++FL +QS LQ Y+ + + +T ++G++YRK + + +R T G +VNLMSVDAQ+ DL FL + WS P QII+++ L+ +G SVLAG +VLLIPLN + + + + KQMKLKD R KLM+EIL GIK++K+YAWE SFL +V G R EL+ LR + L T FT C+PFLV+++T YVY+ L AEKAFVS++LFNI+R PL +LP L+SN+ VS+KRI +FL EELD + V+R G A+ + G+F+W D P L +D+ +PKG+LVA+VG VG GKSSL+SA+LGE+ ++ GKV G +AYV QQ WIQN T++EN+LF K ++Y ++ACAL +DLE+L GD TEIGEKGINLSGGQ+QRV+LARA+Y++ADI+L+DDPLSAVDSHV KHIF+ VIGP+G+L KTRVLVTH +SFLP+ D IIVL D +SE G Y LL FA FL Y +++G D L+ E + + S++ L T+ + Y K+ + S D G + + + G + EEK+ GTV SVF Y K++G+ TT+ I L G AA IG+ +WL+ W++ M DS+++ +G+Y +G+ Q + + +A G I A+R+LH LL + P SFF+TTP GR++N F KDI VDE + + +F + + T+ +I STP+F V+LP+A+LY + QRFY +SRQLKR+ SV RSPI++H+ E++ GAS IRA+ + +F +++K+D Q + YP +R
Sbjct: 267 TARHKASAAPGKNASGEDEVLLGARPRPRKPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGLMFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSVDAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRAFQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTTTFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQASVSLKRIQQFLSQEELDPQSVER-KTISPGYAITIHSGTFTWAQDLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQAWIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQRVSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVIGPEGVLAGKTRVLVTHGISFLPQTDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEALLIEDTLSNHTDL--------------TDNDPVTYVVQKQFMRQLSALSSDGEGQGRPVPRRHLGPSEKVQVTEAKAD------GALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTNDA--MADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQSFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILPLAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTKVDANQRSCYPYIISNR 1193 HSP 2 Score: 464.537 bits (1194), Expect = 1.351e-137 Identity = 217/350 (62.00%), Postives = 277/350 (79.14%), Query Frame = 2
Query: 2903 INCKQHITLPSTVIGRWLAIRLEACGNLITFFAALFCIVQRENLSPGIAGLSISYSLSITQSLNWLVRMASELETNIISVERINDYIANEVEAPSIVEDNRPPEDWPHNGSIKFDNYSVRYRHGLDLVLKDISFDVNGSEKIGIVGRTGAGKSSVTLALFRIIESCCGKISIDGKDISQIGLKDLRSKISIIPQDPVLFSGSIRFNIDPFNKHSDEAIWQVLEISHLKTFVSSLADGLHSEVVEGGDNLSVGQRQLVCLARALLRKSKILVLDEATAAVDMETDSYIQQTIRNEFSGCTVLTIAHRLNTIIDYDRILVLDKGHIAEFDSPDNLLKDEKTIFYGMIKDAGL 3952
++ Q P + RWL+I +E GN + FAALF ++ R +L+PG+ GLS+SYSL +T +LNW++RM S+LE+NI++VER+ +Y E EAP +VE +RPPE WP G ++F NYSVRYR GLDLVL+D+S V+G EK+GIVGRTGAGKSS+TL LFRI+E+ G+I IDG +++ IGL DLRS+++IIPQDP+LFSG++R N+DPF +S+E IW LE+SHL TFVSS GL + EGG+NLSVGQRQLVCLARALLRKS+ILVLDEATAA+D+ETD+ IQ TIR +F CTVLTIAHRLNTI+DY R+LVLDKG +AEFDSP NL+ + IFYGM +DAGL
Sbjct: 1178 VDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIGRSSLNPGLVGLSVSYSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEFRNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDGLNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQPAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQFDTCTVLTIAHRLNTIMDYTRVLVLDKGVVAEFDSPANLIA-ARGIFYGMARDAGL 1526 HSP 3 Score: 83.1889 bits (204), Expect = 8.568e-16 Identity = 71/276 (25.72%), Postives = 122/276 (44.20%), Query Frame = 2
Query: 3089 LNWLVRMASELETNIISVERINDYIANEVEAPSIVEDNRPPEDWPHNGSIKFDNYSVRYRHGLDLVLKDISFDVNGSEKIGIVGRTGAGKSSVTLALFRIIESCCGKISIDGKDISQIGLKDLRSKISIIPQDPVLFSGSIRFNIDPFNKHSDEAIWQVLEISHLKTFVSSLADGLHSEVVEGGDNLSVGQRQLVCLARALLRKSKILVLDEATAAVDMETDSYIQQTI---RNEFSGCTVLTIAHRLNTIIDYDRILVLDKGHIAEFDSPDNLLK 3907
LN L ++ S L +S++RI +++ E P VE + +I + + + L L + V + +VG G GKSS+ AL +E GK+ + G ++ +PQ + + +++ N+ + + Q LE L + L G +E+ E G NLS GQRQ V LARA+ + I +LD+ +AVD +I + +G T + + H ++ + D I+VL G ++E LL+
Sbjct: 582 LNMLPQLISNLTQASVSLKRIQQFLSQEELDPQSVERKTISPGY----AITIHSGTFTWAQDLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGS-------------VAYVPQQAWIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQRVSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVIGPEGVLAGKTRVLVTHGISFLPQTDFIIVLADGQVSEMGPYPALLQ 840 The following BLAST results are available for this feature:
BLAST of TCONS_00005134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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