TCONS_00005133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005133
Unique NameTCONS_00005133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005133 ID=TCONS_00005133|Name=TCONS_00005133|organism=Clytia hemisphaerica|type=transcript|length=373bp
ttttagaacTGTAATAAAAATCTACAAACATGAAacctaaaaaagctaaa
atgaAGAAGTTAAACAACACAAAGGTTCCTGCTAATGTGATTGCCTTGTA
CAATTTTGACCCTTTTAATGATGAAATTCCTTCATCAAATGAGTCAATTA
ACCAAGCACAACCCGATGTTTCAGTTTTGTTGAAGTTGTCGAGGGGAGAT
AAACTTTCAGTGATGAGTGAATCACTTGACTGGTGGCTGATGtgtaaatc
aacaaaaacaggAAAAGAAGGATATGTCTTTAGTACGCTGACAGCACCCT
TCTCAGAAAACAGtgAAGTCAACTTGTGCAATGCACTTTACTTTCCCAAT
GATCCAAAGCTACATCAGAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00005133-protein

>TCONS_00005133-protein ID=TCONS_00005133-protein|Name=TCONS_00005133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MKPKKAKMKKLNNTKVPANVIALYNFDPFNDEIPSSNESINQAQPDVSVL
LKLSRGDKLSVMSESLDWWLMCKSTKTGKEGYVFSTLTAPFSENSEVNLC
NALYFPNDPKLHQK
Run BLAST on NCBI

transcript from alignment at sc0000051:363778..364511+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005133 ID=TCONS_00005133|Name=TCONS_00005133|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0000051:363778..364511+ (Clytia hemisphaerica)
ttttagaacTGTAATAAAAATCTACAAACATGAAacctaaaaaagctaaa
atgaAGAAGTTAAACAACACAAAGGTTCCTGCTAATGTGATTGCCTTGTA
CAATTTTGACCCTTTTAATGATGAAATTCCTTCATCAAATGAGTCAATTA
ACCAAGCACAACCCGATGTTTCAGTTTTGTTGAAGTTGTCGAGGGGAGAT
AAACTTTCAGTGATGAGTGAATCACTTGACTGGTGGCTGATGtgtaaatc
aacaaaaacaggAAAAGAAGGATATGTCTTTAGTACGCTGACAGCACCCT
TCTCAGAAAACAGGTATGAATTTTCAATTACGGTCCTGCCTTTTTTTAAA
TGCCATCTTTAACCAGTTTATTCAATAGGCACTTATGTTAATGAATAAGT
TAAGAACCATATATTTTACGTTTAATTCATTAACAAATTGAGTCAAATGT
ACAATGTATGATTTAATCAAGGTTAGACGAATCGATGGTGTCAGAGTGCT
CGATGGGTAACTAGAGCTATGTAATTATCAAGAAAAGTTATCTTTTAATC
Catcaaacaaaactaaaaattaaaaactaaaacttaagatttttagtttt
gtttgatGGATTAAAAGATAACTTTTCTTGATAACAATGTATGATTTATG
AATtttcgttttatttttttatagtgAAGTCAACTTGTGCAATGCACTTT
ACTTTCCCAATGATCCAAAGCTACATCAGAAGGT

Coding sequence (CDS) from alignment at sc0000051:363778..364511+

>TCONS_00005133 ID=TCONS_00005133|Name=TCONS_00005133|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000051:363778..364511+ (Clytia hemisphaerica)
ATGAAacctaaaaaagctaaaatgaAGAAGTTAAACAACACAAAGGTTCC
TGCTAATGTGATTGCCTTGTACAATTTTGACCCTTTTAATGATGAAATTC
CTTCATCAAATGAGTCAATTAACCAAGCACAACCCGATGTTTCAGTTTTG
TTGAAGTTGTCGAGGGGAGATAAACTTTCAGTGATGAGTGAATCACTTGA
CTGGTGGCTGATGtgtaaatcaacaaaaacaggAAAAGAAGGATATGTCT
TTAGTACGCTGACAGCACCCTTCTCAGAAAACAGtgAAGTCAACTTGTGC
AATGCACTTTACTTTCCCAATGATCCAAAGCTACATCAGAAGATGAAacc
taaaaaagctaaaatgaAGAAGTTAAACAACACAAAGGTTCCTGCTAATG
TGATTGCCTTGTACAATTTTGACCCTTTTAATGATGAAATTCCTTCATCA
AATGAGTCAATTAACCAAGCACAACCCGATGTTTCAGTTTTGTTGAAGTT
GTCGAGGGGAGATAAACTTTCAGTGATGAGTGAATCACTTGACTGGTGGC
TGATGtgtaaatcaacaaaaacaggAAAAGAAGGATATGTCTTTAGTACG
CTGACAGCACCCTTCTCAGAAAACAGtgAAGTCAACTTGTGCAATGCACT
TTACTTTCCCAATGATCCAAAGCTACATCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002926XLOC_002926Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005133-proteinTCONS_00005133-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005133-exon-sc0000051-1491911889:363778..364090TCONS_00005133-exon-sc0000051-1491911889:363778..364090Clytia hemisphaericaexon
TCONS_00005133-exon-sc0000051-1510915933:363778..364090TCONS_00005133-exon-sc0000051-1510915933:363778..364090Clytia hemisphaericaexon
TCONS_00005133-exon-sc0000051-1575043694:363778..364090TCONS_00005133-exon-sc0000051-1575043694:363778..364090Clytia hemisphaericaexon
TCONS_00005133-exon-sc0000051-1491911889:364452..364511TCONS_00005133-exon-sc0000051-1491911889:364452..364511Clytia hemisphaericaexon
TCONS_00005133-exon-sc0000051-1510915933:364452..364511TCONS_00005133-exon-sc0000051-1510915933:364452..364511Clytia hemisphaericaexon
TCONS_00005133-exon-sc0000051-1575043694:364452..364511TCONS_00005133-exon-sc0000051-1575043694:364452..364511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:363778..364511 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70616	8.01624	0.979749	0.958532	36.4662	28.5856	31.4279	25.7772	15.4951	27.5478	6.13673	12.3903	11.6537	11.9531	8.35298	12.5233	13.8037	19.3083	5.05914	6.73786	14.2227	18.9757	9.92148	14.8831	19.51	21.5579	10.382	4.74854	10.0845	7.82819
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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