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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005124 ID=TCONS_00005124|Name=TCONS_00005124|organism=Clytia hemisphaerica|type=transcript|length=4305bpRun BLAST on NCBI protein sequence of TCONS_00005124-protein >TCONS_00005124-protein ID=TCONS_00005124-protein|Name=TCONS_00005124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1424bp MMTGMSAFRYKRNTPESKTTISKLEGRIEELVSQLQRLNEEKLNQETELERun BLAST on NCBI transcript from alignment at sc0000051:157872..168931+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005124 ID=TCONS_00005124|Name=TCONS_00005124|organism=Clytia hemisphaerica|type=transcript|length=11060bp|location=Sequence derived from alignment at sc0000051:157872..168931+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:157872..168931+ >TCONS_00005124 ID=TCONS_00005124|Name=TCONS_00005124|organism=Clytia hemisphaerica|type=CDS|length=81225bp|location=Sequence derived from alignment at sc0000051:157872..168931+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00005124 vs. Swiss-Prot (Human)
Match: GCC2 (GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens GN=GCC2 PE=1 SV=4) HSP 1 Score: 122.865 bits (307), Expect = 7.480e-28 Identity = 155/524 (29.58%), Postives = 263/524 (50.19%), Query Frame = 3
Query: 2739 LQSAHKETTQMNVMNLEIDDYLKTIENLNQKLQTKDAECEELKK-----------ANEEMASLKKAKQSVDEXXXXXXXXXXXXXXXXXXXXSQANKNEEEHNVSRDQIQ-ELSLA---IEDLKMQVSETVREKEKIQTELQQKLEIQQKSYQTLEVKFNRSHSDMTSSHNALEELKTEYESYKVRAHNVLKQQKENSSNTLVERHDAEIAR--LESVISELR-------NELSTNKDELNVTKDEHEQLEIEFEKQHALQAEFMKEFNEKENRFKHKFKQMKSEADAKDADHENKIKLLITENNKLLQFTKGQMEDVKLENEDHLKEIESLKKQIGHLKSTAA----ENTSRDIKRED----GLAENKGSHLSLDFAGNKSLMERQEGEGMDQTELEXXXXXXXXXXXXVPQTPLSPSATSILENILQHDSPQT---PLAMKDELTR--LKSSLQTSLKKNDHMTALLRESEANASRHYEQAIVLKEEIRRLERNEKREQDLLNMEYLKNIIVKVSNYIDKGG 4199
L+ K+ Q +MN+EI DY + ++ LNQKL K+ + E+L++ EE+ SL+ + Q +EKN K+K L++K KKE+ + + + E +H + + ++ EL + +E K+Q++E EK KI L+ E Q++ + + + ++ + +E+ESYKVR HNVLKQQK N S + E A+ R LE +I +L+ N L N EL + EH+ L E+ + + ++E KE + K ++SE ++H + L ++N L + Q+ ++ E+H K +E+L++Q+ +++ E T+R L E + + L L + + R+EGEGM+ T+ E + S + + T LE +L +SP+T P E T+ L L ++ K DH+ LLRE+EA + EQ +LK EIRRLERN++RE+ N+EYLKN++++ ++ G
Sbjct: 1145 LELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL----ADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQK-NKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTL---LERHNKM----LQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQ---EEHRKTVETLQQQLSKMEAQLFQLKNEPTTRSPVSSQQSLKNLRERRNTDLPL---LDMHTVTREEGEGMETTDTESVSS--------------ASTYTQSLEQLL--NSPETKLEPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFI-FLKPGS 1633 The following BLAST results are available for this feature:
BLAST of TCONS_00005124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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