TCONS_00005122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005122
Unique NameTCONS_00005122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005122 ID=TCONS_00005122|Name=TCONS_00005122|organism=Clytia hemisphaerica|type=transcript|length=209bp
TCTTCAGGAACTTCAAGAGACCAGTGACTTActgaaagaagaaaatgata
aaCTGAAACAAAGTTTACGTGACGTCACACAAGAGTGGGAAGAGAAATAC
CAGGTTTTGTTGCAAGAAAAAGAGGACGTTGAGAAGCAATCGAATACATC
TTTGGAGACAGAAGAACAAAAGACTTCTGAATTGTTGAATTCTTCCCAAG
AAAAAGCGA
Run BLAST on NCBI

transcript from alignment at sc0000051:152501..153547+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005122 ID=TCONS_00005122|Name=TCONS_00005122|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at sc0000051:152501..153547+ (Clytia hemisphaerica)
TCTTCAGGAACTTCAAGAGACCAGTGACTTActgaaagaagaaaatgata
aaCTGAAACAAAGTTTACGTGACGTCACACAAGAGTGGGAAGAGAAATAC
CAGGTAATAATAGAGAGACGAAATGAATTTTTACAGCCACTAGGGTTTCA
AAGAAAGGTTTAATAATTTTAGTATAAGTTGATCCTATTgaaggttttta
aaagaaaattcaaacacAGGAGATTCATTCTTGTTTTTTGTTAAACTCAA
GATATTTTCTATATACTGATTGATGATGACACTCGGATGAGGCCGACACG
tctatagaaaatattttaagtttCTGTCTTTTTTGTATGGATTTGGTCAG
CTCTGGTTTAAGACGGCCGGTTAAAGTGGATAGAGGTTGGCTGTCTGAAG
TCAATGCACCACCacttgacgtcaatgcaatgaccgCCAtatttccaagc
aaagattttaactaccTAATTTTTGCCTACAATACCTATCAACGCTATCA
TCAATCGTGGCTTTTTAGGGGACTGGTAATATATTTACAAGGAACATTTG
TTCTCAGCGGAAGGCTACAAATAAATCAAGCCAAGCATATTCCTGCTGAA
ACTCTAGAGACATTTTCTCGAGTCTCTGGGTTGAAGTGCAAACCGTTTTT
AGCATTCAAATACTATATTTACGTTATTTTAGCGCTTCATTGCAACATTT
TCACAAGAGCACTCCTAAACTTGTGTTTTCGATACCGTCGTCTAGAAAAC
CTTTCCTTGTATTTTCGTTACCAGTCTCCTTAAAAGCTCGCCGTGTCGCT
TAACTGTTGATAGGTTTCTCAGAATAGACGGAGCAGAAAGTTGACCGTCT
AAATTATTGCTTAACTTCTTCTGAGGTCATCATGAGATCCTAAGTGAGTG
AGTGTAAAATTGGTATTAAGACATTTGAATTTTGTTTCCAGGTTTTGTTG
CAAGAAAAAGAGGACGTTGAGAAGCAATCGAATACATCTTTGGAGACAGA
AGAACAAAAGACTTCTGAATTGTTGAATTCTTCCCAAGAAAAAGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002918XLOC_002918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005122-exon-sc0000051-1491911889:152501..152603TCONS_00005122-exon-sc0000051-1491911889:152501..152603Clytia hemisphaericaexon
TCONS_00005122-exon-sc0000051-1510915933:152501..152603TCONS_00005122-exon-sc0000051-1510915933:152501..152603Clytia hemisphaericaexon
TCONS_00005122-exon-sc0000051-1575043694:152501..152603TCONS_00005122-exon-sc0000051-1575043694:152501..152603Clytia hemisphaericaexon
TCONS_00005122-exon-sc0000051-1491911889:153442..153547TCONS_00005122-exon-sc0000051-1491911889:153442..153547Clytia hemisphaericaexon
TCONS_00005122-exon-sc0000051-1510915933:153442..153547TCONS_00005122-exon-sc0000051-1510915933:153442..153547Clytia hemisphaericaexon
TCONS_00005122-exon-sc0000051-1575043694:153442..153547TCONS_00005122-exon-sc0000051-1575043694:153442..153547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:152501..153547 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.88951	0	16.9234	8.80196	1.23249	0	0	4.87036	2.91816	1.01018	0.830504	0	0	0	0	1.62694	0	0	0	0	6.28125	12.6132	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top