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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005111 ID=TCONS_00005111|Name=TCONS_00005111|organism=Clytia hemisphaerica|type=transcript|length=1201bp
CTAGGAATGAATACAATGATCTCTAAACAACAGTGTAAAATGTaatcaaa
aatatcaacatcaaGAAGTCAACAAACTGCcttcaaataatcaaaataat
atcTATCTAGCATGTAGATGGGTCATCATTGCTTGCCCTTTTCAGCTCCT
CTCTCAGGGATTTCTGTCTATTTAATTTTAATGCTAGCTTGAATTTCTCC
CTCACATTTTTAGCATAGGAATGTGCTCTGATTCTGATATAAAGACCAAC
AAGAGTATCAAGCAAATCGTATGCAAGATCTTTTGTAATGGCACTTTCAT
gtgattttaagactttgtcaAAATTGATTCTGACCTCTATATTTTTCACA
CAATTTTGTTTGATTAATTTGTAATCAATTTTACGAactgtcattttttt
ctttttagtgaaatttctgaaaatcaatTCAACAGAGTGAAAAATAGCAA
TAGCTTCCTTTCGTGTATACCATAATCCTCCTCTATCTTTTGCGTGAATG
AACTTTTGCTCCTCTGTAGCTTCAACTTTAAATTCACAAATCAAAGCTAT
CATTTGCTGGAAAGAAACTTTCCAATAGTTACGATTCTTTCTCAATTTAA
GATAAATTTTATGGAACACGTGTCCGGTCAAATATTCTAAAGACTCGATT
TCCCGTTTAGCCAAGACaacttttgttttatttgtttccTGTGATGAAGA
TTCTTTTGGCTCTTGTAATGTAGCAAGGCAAAGTGCAGCTACTTCAAATA
GGAATAATTGatatgcttgaatgtttgaaaatttatttttgagctCATTG
ATGTATTTTTGATCTTCTTCTCTTTCCTTTTCTTTCCTTTGATCTTCTTC
GTTTTGCTTCTTCGATTCCTTGCTATTATCTTTATCTTTCATCAGTGTGT
CATTCTGAGTATTCAGCTTTTCTTTAAAGACTTGTAAGAAAAGTTCAAGa
tccttttttctttcaaatttaagAATATCGTCTTTCAATGTTCTGAAAAA
TGCCCGTCCCTGATCACCTGTAATTTCATCCGTTAAATTGAATCCTTCTC
TGAACGTGGCTGGAAAATTTTCATCACTTTTAATGTTTTCCAGtgccttt
ttcatgtttttcttgATGTCAAGAGGGTGAAGGAGACGAGCAGCTTGTTG
TGACTGTAGTTGTTctatttgttgtttttcaagTAAAACAGTGTCAGGAT
G Run BLAST on NCBI protein sequence of TCONS_00005111-protein >TCONS_00005111-protein ID=TCONS_00005111-protein|Name=TCONS_00005111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
HPDTVLLEKQQIEQLQSQQAARLLHPLDIKKNMKKALENIKSDENFPATF
REGFNLTDEITGDQGRAFFRTLKDDILKFERKKDLELFLQVFKEKLNTQN
DTLMKDKDNSKESKKQNEEDQRKEKEREEDQKYINELKNKFSNIQAYQLF
LFEVAALCLATLQEPKESSSQETNKTKVVLAKREIESLEYLTGHVFHKIY
LKLRKNRNYWKVSFQQMIALICEFKVEATEEQKFIHAKDRGGLWYTRKEA
IAIFHSVELIFRNFTKKKKMTVRKIDYKLIKQNCVKNIEVRINFDKVLKS
HESAITKDLAYDLLDTLVGLYIRIRAHSYAKNVREKFKLALKLNRQKSLR
EELKRASNDDPSTC Run BLAST on NCBI transcript from alignment at sc0000050:579161..580361 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005111 ID=TCONS_00005111|Name=TCONS_00005111|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at sc0000050:579161..580361 (Clytia hemisphaerica)
CATCCTGACACTGTTTTActtgaaaaacaacaaatagAACAACTACAGTC
ACAACAAGCTGCTCGTCTCCTTCACCCTCTTGACATcaagaaaaacatga
aaaaggcaCTGGAAAACATTAAAAGTGATGAAAATTTTCCAGCCACGTTC
AGAGAAGGATTCAATTTAACGGATGAAATTACAGGTGATCAGGGACGGGC
ATTTTTCAGAACATTGAAAGACGATATTcttaaatttgaaagaaaaaagg
atCTTGAACTTTTCTTACAAGTCTTTAAAGAAAAGCTGAATACTCAGAAT
GACACACTGATGAAAGATAAAGATAATAGCAAGGAATCGAAGAAGCAAAA
CGAAGAAGATCAAAGGAAAGAAAAGGAAAGAGAAGAAGATCAAAAATACA
TCAATGagctcaaaaataaattttcaaacattcaagcatatCAATTATTC
CTATTTGAAGTAGCTGCACTTTGCCTTGCTACATTACAAGAGCCAAAAGA
ATCTTCATCACAggaaacaaataaaacaaaagttGTCTTGGCTAAACGGG
AAATCGAGTCTTTAGAATATTTGACCGGACACGTGTTCCATAAAATTTAT
CTTAAATTGAGAAAGAATCGTAACTATTGGAAAGTTTCTTTCCAGCAAAT
GATAGCTTTGATTTGTGAATTTAAAGTTGAAGCTACAGAGGAGCAAAAGT
TCATTCACGCAAAAGATAGAGGAGGATTATGGTATACACGAAAGGAAGCT
ATTGCTATTTTTCACTCTGTTGAattgattttcagaaatttcactaaaaa
gaaaaaaatgacagtTCGTAAAATTGATTACAAATTAATCAAACAAAATT
GTGTGAAAAATATAGAGGTCAGAATCAATTTtgacaaagtcttaaaatca
cATGAAAGTGCCATTACAAAAGATCTTGCATACGATTTGCTTGATACTCT
TGTTGGTCTTTATATCAGAATCAGAGCACATTCCTATGCTAAAAATGTGA
GGGAGAAATTCAAGCTAGCATTAAAATTAAATAGACAGAAATCCCTGAGA
GAGGAGCTGAAAAGGGCAAGCAATGATGACCCATCTACATGCTAGATAga
tattattttgattatttgaagGCAGTTTGTTGACTTCttgatgttgatat
ttttgattACATTTTACACTGTTGTTTAGAGATCATTGTATTCATTCCTA
G Coding sequence (CDS) from alignment at sc0000050:579161..580361 >TCONS_00005111 ID=TCONS_00005111|Name=TCONS_00005111|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0000050:579161..580361 (Clytia hemisphaerica)
CATCCTGACACTGTTTTActtgaaaaacaacaaatagAACAACTACAGTC
ACAACAAGCTGCTCGTCTCCTTCACCCTCTTGACATcaagaaaaacatga
aaaaggcaCTGGAAAACATTAAAAGTGATGAAAATTTTCCAGCCACGTTC
AGAGAAGGATTCAATTTAACGGATGAAATTACAGGTGATCAGGGACGGGC
ATTTTTCAGAACATTGAAAGACGATATTcttaaatttgaaagaaaaaagg
atCTTGAACTTTTCTTACAAGTCTTTAAAGAAAAGCTGAATACTCAGAAT
GACACACTGATGAAAGATAAAGATAATAGCAAGGAATCGAAGAAGCAAAA
CGAAGAAGATCAAAGGAAAGAAAAGGAAAGAGAAGAAGATCAAAAATACA
TCAATGagctcaaaaataaattttcaaacattcaagcatatCAATTATTC
CTATTTGAAGTAGCTGCACTTTGCCTTGCTACATTACAAGAGCCAAAAGA
ATCTTCATCACAggaaacaaataaaacaaaagttGTCTTGGCTAAACGGG
AAATCGAGTCTTTAGAATATTTGACCGGACACGTGTTCCATAAAATTTAT
CTTAAATTGAGAAAGAATCGTAACTATTGGAAAGTTTCTTTCCAGCAAAT
GATAGCTTTGATTTGTGAATTTAAAGTTGAAGCTACAGAGGAGCAAAAGT
TCATTCACGCAAAAGATAGAGGAGGATTATGGTATACACGAAAGGAAGCT
ATTGCTATTTTTCACTCTGTTGAattgattttcagaaatttcactaaaaa
gaaaaaaatgacagtTCGTAAAATTGATTACAAATTAATCAAACAAAATT
GTGTGAAAAATATAGAGGTCAGAATCAATTTtgacaaagtcttaaaatca
cATGAAAGTGCCATTACAAAAGATCTTGCATACGATTTGCTTGATACTCT
TGTTGGTCTTTATATCAGAATCAGAGCACATTCCTATGCTAAAAATGTGA
GGGAGAAATTCAAGCTAGCATTAAAATTAAATAGACAGAAATCCCTGAGA
GAGGAGCTGAAAAGGGCAAGCAATGATGACCCATCTACATGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005111-exon-sc0000050-1491911889:579161..580361 | TCONS_00005111-exon-sc0000050-1491911889:579161..580361 | Clytia hemisphaerica | exon |
| TCONS_00005111-exon-sc0000050-1510915933:579161..580361 | TCONS_00005111-exon-sc0000050-1510915933:579161..580361 | Clytia hemisphaerica | exon |
| TCONS_00005111-exon-sc0000050-1575043694:579161..580361 | TCONS_00005111-exon-sc0000050-1575043694:579161..580361 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:579161..580361 . |
Blast
The following BLAST results are available for this feature:
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