TCONS_00005094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005094
Unique NameTCONS_00005094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005094 ID=TCONS_00005094|Name=TCONS_00005094|organism=Clytia hemisphaerica|type=transcript|length=391bp
CGAGTCAAAAATCTCAGAATCAAAACATTGCAAATGGCGGACAAAATTCT
GCTAGAGTGTCTTCAAAAAAGAGtacatttcttttggaaataacaTATCA
TTACCTTTCGATATGGGATTGGATATTTATGTGAATCGAATCAGCAACAT
ATATTGGTCTTTTTTACAAAGTTTGAGAGTATATTTCGATGGGATTGTCA
AGATATTGCTGGATATACATTAGAGAGTCAAATTTGATGTAATGAGCTAG
AATGATGCAAAGTTGGAAATCTCAATTTTTGTGTCTTATCTTTGTTTCCT
TTTATGAATCGATCTACCACTTATTATTTTCAGTTAGCAATATTGAGAAA
AAGcaaatctaaaatgaaagataaaaatatttggatgactc
Run BLAST on NCBI

transcript from alignment at sc0000050:236544..236934

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005094 ID=TCONS_00005094|Name=TCONS_00005094|organism=Clytia hemisphaerica|type=transcript|length=391bp|location=Sequence derived from alignment at sc0000050:236544..236934 (Clytia hemisphaerica)
gagtcatccaaatatttttatctttcattttagatttgCTTTTTCTCAAT
ATTGCTAACTGAAAATAATAAGTGGTAGATCGATTCATAAAAGGAAACAA
AGATAAGACACAAAAATTGAGATTTCCAACTTTGCATCATTCTAGCTCAT
TACATCAAATTTGACTCTCTAATGTATATCCAGCAATATCTTGACAATCC
CATCGAAATATACTCTCAAACTTTGTAAAAAAGACCAATATATGTTGCTG
ATTCGATTCACATAAATATCCAATCCCATATCGAAAGGTAATGATAtgtt
atttccaaaagaaatgtaCTCTTTTTTGAAGACACTCTAGCAGAATTTTG
TCCGCCATTTGCAATGTTTTGATTCTGAGATTTTTGACTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002890XLOC_002890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005094-exon-sc0000050-1491911889:236544..236934TCONS_00005094-exon-sc0000050-1491911889:236544..236934Clytia hemisphaericaexon
TCONS_00005094-exon-sc0000050-1510915933:236544..236934TCONS_00005094-exon-sc0000050-1510915933:236544..236934Clytia hemisphaericaexon
TCONS_00005094-exon-sc0000050-1575043694:236544..236934TCONS_00005094-exon-sc0000050-1575043694:236544..236934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:236544..236934 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217464	0.57027	1.0739	1.43961	5.25375	1.20937	1.94068	2.92292	0.164266	0.664259	0	0.733613	0.573672	0.652609	0.137943	0.79824	0.439006	0.299978	1.966	1.14769	4.31187	2.74475	1.67966	1.22568	0.418581	1.06313	5.69103	4.38436	4.22555	3.30515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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