TCONS_00005093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005093
Unique NameTCONS_00005093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005093 ID=TCONS_00005093|Name=TCONS_00005093|organism=Clytia hemisphaerica|type=transcript|length=496bp
NNAATTAATTTGATCATAATAGAAGTTAAAACTATCAAAAGCActgatta
aatttttattattgttattactaTAGTTGTTTTCAGTCATAGAAAAGTTC
AGATGACTTGTAACATCAATGATGGAGTGGTCTGAGAGAGCAGTTGGTGT
GCATAGGTAGTTGAAGATTGAATCAGAGTTATTAGTCAGTAAGAAGTCTA
ATATATTGCCATTAGAATGAGTAGGCTTATGGATCATCTGGTTCAAGTTT
AAAATTGAAGtaaaattgtttaaaacatCTAGGAGTTGTTTGTTGCAACT
AATTGATGGTATGTAGGAGTCATTTTTTATGGTGTGGGGTATATTGAAAT
CACCACATAGATAAATATCGGGGGTATTTCCTTCGATTGATTCAATGATG
TCCTGCATTGCTGAGATAAGGTCCAAGAATTCCGGAGCCGCTGATTTGTG
CAGAATATTTGTTGGCTGTCTATAAATGACACCAAGAATAAGGTTA
Run BLAST on NCBI

protein sequence of TCONS_00005093-protein

>TCONS_00005093-protein ID=TCONS_00005093-protein|Name=TCONS_00005093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
NLILGVIYRQPTNILHKSAAPEFLDLISAMQDIIESIEGNTPDIYLCGDF
NIPHTIKNDSYIPSISCNKQLLDVLNNFTSILNLNQMIHKPTHSNGNILD
FLLTNNSDSIFNYLCTPTALSDHSIIDVTSHLNFSMTENNYSNNNNKNLI
SAFDSFNFYYDQINX
Run BLAST on NCBI

transcript from alignment at sc0000050:233903..234398

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005093 ID=TCONS_00005093|Name=TCONS_00005093|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at sc0000050:233903..234398 (Clytia hemisphaerica)
TAACCTTATTCTTGGTGTCATTTATAGACAGCCAACAAATATTCTGCACA
AATCAGCGGCTCCGGAATTCTTGGACCTTATCTCAGCAATGCAGGACATC
ATTGAATCAATCGAAGGAAATACCCCCGATATTTATCTATGTGGTGATTT
CAATATACCCCACACCATAAAAAATGACTCCTACATACCATCAATTAGTT
GCAACAAACAACTCCTAGatgttttaaacaattttaCTTCAATTTTAAAC
TTGAACCAGATGATCCATAAGCCTACTCATTCTAATGGCAATATATTAGA
CTTCTTACTGACTAATAACTCTGATTCAATCTTCAACTACCTATGCACAC
CAACTGCTCTCTCAGACCACTCCATCATTGATGTTACAAGTCATCTGAAC
TTTTCTATGACTGAAAACAACTAtagtaataacaataataaaaatttaat
cagTGCTTTTGATAGTTTTAACTTCTATTATGATCAAATTAATTNN

Coding sequence (CDS) from alignment at sc0000050:233903..234398

>TCONS_00005093 ID=TCONS_00005093|Name=TCONS_00005093|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000050:233903..234398 (Clytia hemisphaerica)
AACCTTATTCTTGGTGTCATTTATAGACAGCCAACAAATATTCTGCACAA
ATCAGCGGCTCCGGAATTCTTGGACCTTATCTCAGCAATGCAGGACATCA
TTGAATCAATCGAAGGAAATACCCCCGATATTTATCTATGTGGTGATTTC
AATATACCCCACACCATAAAAAATGACTCCTACATACCATCAATTAGTTG
CAACAAACAACTCCTAGatgttttaaacaattttaCTTCAATTTTAAACT
TGAACCAGATGATCCATAAGCCTACTCATTCTAATGGCAATATATTAGAC
TTCTTACTGACTAATAACTCTGATTCAATCTTCAACTACCTATGCACACC
AACTGCTCTCTCAGACCACTCCATCATTGATGTTACAAGTCATCTGAACT
TTTCTATGACTGAAAACAACTAtagtaataacaataataaaaatttaatc
agTGCTTTTGATAGTTTTAACTTCTATTATGATCAAATTAATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002889XLOC_002889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005093-exon-sc0000050-1491911889:233903..234398TCONS_00005093-exon-sc0000050-1491911889:233903..234398Clytia hemisphaericaexon
TCONS_00005093-exon-sc0000050-1510915933:233903..234398TCONS_00005093-exon-sc0000050-1510915933:233903..234398Clytia hemisphaericaexon
TCONS_00005093-exon-sc0000050-1575043694:233903..234398TCONS_00005093-exon-sc0000050-1575043694:233903..234398Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005093-proteinTCONS_00005093-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:233903..234398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.75453	2.85911	3.87113	3.58134	6.67879	3.51387	4.28497	5.30253	6.18882	3.00091	3.46815	4.12841	1.71049	1.52432	2.15733	2.66172	1.02418	1.52633	2.54772	1.96307	3.52517	3.20671	0.644817	0.636805	3.12129	2.41842	1.45184	2.36184	1.09736	1.79891
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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