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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005081 ID=TCONS_00005081|Name=TCONS_00005081|organism=Clytia hemisphaerica|type=transcript|length=1038bp
ttaATATATCTTCTTTCACTAGgcaaaaaataaatctacatcAATCATTT
TAATCGAGATGAGCAGTCGAAAACGATCACATTTTATCCAAGCAAAAGAT
GAATTTGACGAATCACACACGATCAACATTCCCTGTCGAGTCAATAATAT
TCGTTTTCAAGGCTTCGATGAAACTGGGAAATTTTACTGCATTTTAGAAC
GTACTGTTCTGGATCATGTCTGCTTTCACGTAGTATACTATACAGAGCAA
AGAAAGTTGACACGACAAATTATCGAGATCCGAATTCCTCAAAGTCAATT
TggtttaaagaaaaaagtttttttcaatcctGCAGAAACTAAACTGATAT
ATTTGACGGAGGAAAAAGTTACGACAGCTGAAAATCACCAAGAGCTCATT
GTGAATTTATATTCTTTTGAACTGTTTTCGAAATTCGGTATTGGGAATTG
TGAATTATCGCTTGGTGAGCCTGCTTCAACCCTGACATATTCTAACTACA
ATACAATCGATTATGTACACAAAAGGACgatttcaacattaatcatTTAC
GCGTATCGAAAAATTGAGGACGGCGAAAGGTCTTTGTTGAACTCGTTATA
CTCGCCTCGTTGTAGTCTTGATATTGCTAAAAGCAACAATGACGGTTGTT
TACACGTCAAACGAATCGAATTTAACTTATCTGTTTTCTCAGAGGTTATT
ACTCGGAGAATGCCCAGGTTAAGTCTCTCTTCGAGTGGCACTTATTATTT
TTACCGTGAAACTGATGAAACGGAGATTGGCGAAACTTTGGAGATTAAAG
AGTTTGATTCTCAAAGTAAGCTTAGGTATTCTTACTCCATCTATCTTCTT
GGCGAGTTGAATATACTTTACGATTTTGTGGAGATTGAACGATCAATGCT
CATTGTGTTGAAGCGAAATAATGGTGTTGTAACCATGTGCAAACTGATCG
ATGGTCAAGTCATCAGTATAAAGGAATTCAATACCAATCAATACATCGAA
AAGCTTGGCTTTGAACAGATCCTTCATCCTATGAATAG Run BLAST on NCBI protein sequence of TCONS_00005081-protein >TCONS_00005081-protein ID=TCONS_00005081-protein|Name=TCONS_00005081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MSSRKRSHFIQAKDEFDESHTINIPCRVNNIRFQGFDETGKFYCILERTV
LDHVCFHVVYYTEQRKLTRQIIEIRIPQSQFGLKKKVFFNPAETKLIYLT
EEKVTTAENHQELIVNLYSFELFSKFGIGNCELSLGEPASTLTYSNYNTI
DYVHKRTISTLIIYAYRKIEDGERSLLNSLYSPRCSLDIAKSNNDGCLHV
KRIEFNLSVFSEVITRRMPRLSLSSSGTYYFYRETDETEIGETLEIKEFD
SQSKLRYSYSIYLLGELNILYDFVEIERSMLIVLKRNNGVVTMCKLIDGQ
VISIKEFNTNQYIEKLGFEQILHPMN Run BLAST on NCBI transcript from alignment at sc0000050:95563..96600 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005081 ID=TCONS_00005081|Name=TCONS_00005081|organism=Clytia hemisphaerica|type=transcript|length=1038bp|location=Sequence derived from alignment at sc0000050:95563..96600 (Clytia hemisphaerica)
CTATTCATAGGATGAAGGATCTGTTCAAAGCCAAGCTTTTCGATGTATTG
ATTGGTATTGAATTCCTTTATACTGATGACTTGACCATCGATCAGTTTGC
ACATGGTTACAACACCATTATTTCGCTTCAACACAATGAGCATTGATCGT
TCAATCTCCACAAAATCGTAAAGTATATTCAACTCGCCAAGAAGATAGAT
GGAGTAAGAATACCTAAGCTTACTTTGAGAATCAAACTCTTTAATCTCCA
AAGTTTCGCCAATCTCCGTTTCATCAGTTTCACGGTAAAAATAATAAGTG
CCACTCGAAGAGAGACTTAACCTGGGCATTCTCCGAGTAATAACCTCTGA
GAAAACAGATAAGTTAAATTCGATTCGTTTGACGTGTAAACAACCGTCAT
TGTTGCTTTTAGCAATATCAAGACTACAACGAGGCGAGTATAACGAGTTC
AACAAAGACCTTTCGCCGTCCTCAATTTTTCGATACGCGTAAatgattaa
tgttgaaatcGTCCTTTTGTGTACATAATCGATTGTATTGTAGTTAGAAT
ATGTCAGGGTTGAAGCAGGCTCACCAAGCGATAATTCACAATTCCCAATA
CCGAATTTCGAAAACAGTTCAAAAGAATATAAATTCACAATGAGCTCTTG
GTGATTTTCAGCTGTCGTAACTTTTTCCTCCGTCAAATATATCAGTTTAG
TTTCTGCaggattgaaaaaaacttttttctttaaaccAAATTGACTTTGA
GGAATTCGGATCTCGATAATTTGTCGTGTCAACTTTCTTTGCTCTGTATA
GTATACTACGTGAAAGCAGACATGATCCAGAACAGTACGTTCTAAAATGC
AGTAAAATTTCCCAGTTTCATCGAAGCCTTGAAAACGAATATTATTGACT
CGACAGGGAATGTTGATCGTGTGTGATTCGTCAAATTCATCTTTTGCTTG
GATAAAATGTGATCGTTTTCGACTGCTCATCTCGATTAAAATGATTgatg
tagatttattttttgcCTAGTGAAAGAAGATATATtaa Coding sequence (CDS) from alignment at sc0000050:95563..96600 >TCONS_00005081 ID=TCONS_00005081|Name=TCONS_00005081|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000050:95563..96600 (Clytia hemisphaerica)
ATTCATAGGATGAAGGATCTGTTCAAAGCCAAGCTTTTCGATGTATTGAT
TGGTATTGAATTCCTTTATACTGATGACTTGACCATCGATCAGTTTGCAC
ATGGTTACAACACCATTATTTCGCTTCAACACAATGAGCATTGATCGTTC
AATCTCCACAAAATCGTAAAGTATATTCAACTCGCCAAGAAGATAGATGG
AGTAAGAATACCTAAGCTTACTTTGAGAATCAAACTCTTTAATCTCCAAA
GTTTCGCCAATCTCCGTTTCATCAGTTTCACGGTAAAAATAATAAGTGCC
ACTCGAAGAGAGACTTAACCTGGGCATTCTCCGAGTAATAACCTCTGAGA
AAACAGATAAGTTAAATTCGATTCGTTTGACGTGTAAACAACCGTCATTG
TTGCTTTTAGCAATATCAAGACTACAACGAGGCGAGTATAACGAGTTCAA
CAAAGACCTTTCGCCGTCCTCAATTTTTCGATACGCGTAAatgattaatg
ttgaaatcGTCCTTTTGTGTACATAATCGATTGTATTGTAGTTAGAATAT
GTCAGGGTTGAAGCAGGCTCACCAAGCGATAATTCACAATTCCCAATACC
GAATTTCGAAAACAGTTCAAAAGAATATAAATTCACAATGAGCTCTTGGT
GATTTTCAGCTGTCGTAACTTTTTCCTCCGTCAAATATATCAGTTTAGTT
TCTGCaggattgaaaaaaacttttttctttaaaccAAATTGACTTTGAGG
AATTCGGATCTCGATAATTTGTCGTGTCAACTTTCTTTGCTCTGTATAGT
ATACTACGTGAAAGCAGACATGATCCAGAACAGTACGTTCTAAAATGCAG
TAAAATTTCCCAGTTTCATCGAAGCCTTGAAAACGAATATTATTGACTCG
ACAGGGAATGTTGATCGTGTGTGATTCGTCAAATTCATCTTTTGCTTGGA
TAAAATGTGATCGTTTTCGACTGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005081-exon-sc0000050-1491911889:95563..96600 | TCONS_00005081-exon-sc0000050-1491911889:95563..96600 | Clytia hemisphaerica | exon |
| TCONS_00005081-exon-sc0000050-1510915933:95563..96600 | TCONS_00005081-exon-sc0000050-1510915933:95563..96600 | Clytia hemisphaerica | exon |
| TCONS_00005081-exon-sc0000050-1575043694:95563..96600 | TCONS_00005081-exon-sc0000050-1575043694:95563..96600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:95563..96600 . |
Blast
The following BLAST results are available for this feature:
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