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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005066 ID=TCONS_00005066|Name=TCONS_00005066|organism=Clytia hemisphaerica|type=transcript|length=4951bpRun BLAST on NCBI protein sequence of TCONS_00005066-protein >TCONS_00005066-protein ID=TCONS_00005066-protein|Name=TCONS_00005066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1358bp VIFVFRTCRKENKMAAADIDNQIKELQNLRGNKDDQETNNKGISFGTALERun BLAST on NCBI transcript from alignment at sc0000050:675116..710056- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005066 ID=TCONS_00005066|Name=TCONS_00005066|organism=Clytia hemisphaerica|type=transcript|length=34941bp|location=Sequence derived from alignment at sc0000050:675116..710056- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000050:675116..710056- >TCONS_00005066 ID=TCONS_00005066|Name=TCONS_00005066|organism=Clytia hemisphaerica|type=CDS|length=93771bp|location=Sequence derived from alignment at sc0000050:675116..710056- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005066 vs. Swiss-Prot (Human)
Match: SF3B1 (Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3) HSP 1 Score: 1870.9 bits (4845), Expect = 0.000e+0 Identity = 981/1367 (71.76%), Postives = 1105/1367 (80.83%), Query Frame = 1
Query: 52 DIDNQIKELQNLRGNKDDQETNNKGISFGTALEAELYGNGD-KYQGYDQSIATNDMEEEDDDFTSST--IG-KAQSFTAHKSVLKEIEKEGHNVDPMAEHKIPTVGDRQNEYQQRMRKLLISPARADPFADGGKTPD--VRSRTYMDVLAEQRLVAEKAKVIKKIQDQHKNGE-----QPQAQSDAKKKRRRWDQTATEEAPAKKK----WDQAETPSNT---RWDETPGRQKQTGAETPGTVHGSETPGTMRGEETPGRTPGATPSTRAWEATPSYIXXXXXX-------XXXXXXXXXXXQSTRRKRWDETPSQQATETPGRTPGWAETPKTDRIGSEXXXXXXXXXXXKKRSRWDETP--QVGGATPGSQTPSAATPSMGTPSGNLNSLMGTPSATPGGTVAMQMQTPTPGHLISMTPEQMQAYRWEKEIDDRNRPLTDDELDALMPFEGYKILQPPANYQPIRTPARKLTATPTPINMGTGFRMQTDERGNVKGVVEEQPPGNLPSLKPDDYQYFDKLLVDVDETTLSSEEQRERKIMKLLLKIKNGTPPMRKAALRQVTDKAREMGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRNLVEIIEHGLVDEQQKVRXXXXXXXXXXXESATPYGIESFDSVLKPLWKGIKQHRGKGLAAFLKAIGYLIPLMDAEYAYHYTREVMIILIREFQSPDEEMKKIVLKVVKQCCATDGVEANYIKEEILPEFFKNFWTHRMALDRRNYRQLVDTTVEVANKVGAAHIVGRVVDDLKDENEQYRKMVLETIEKVMANLGASEIDSRLEEQLIDGILYAFQEQTNEDVVMLNGFGTVINAFGARTKPYLPQICGTILWRLSNKNAKVRQQAADLIARTSVVMKTCGEEKLMGHLGVVLYESFGEEYPEVLGSILGAMKSIVNVIGMSKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEHVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIXLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAAIKHMSIGVFGFGCEDALTHLINHVWPNIFETSPHVINAVIEALEGFRVGLGPLKLMQYVMQGLFHPARKVRDIYWKIYNGLYIASQDALVAGYPSIPNEPENSFLRNELHYI 4071
DI+ QI+E+Q + D E G+ + E+YG D ++ GY SIA ++E++DDD++SST +G K + A ++L +I + DP AEH+ P + DR++EY++ R ++ISP R DPFADGGKTPD + +RTYMDV+ EQ L E+ ++ +++ ++ K GE A K++RRWDQTA + A K WDQAETP +T RWDETPGR K GSETPG ATP ++ W+ TPS+ PAG+AT G S R+ RWDETP + +TPG GWAETP+TDR G ++ G TPTPG K++SRWDETP Q+GG+TP + TP TP GT AM M TPTPGH++SMTPEQ+QA+RWE+EID+RNRPL+D+ELDA+ P EGYK+L PPA Y PIRTPARKLTATPTP+ TGF MQT++R V +QP GNLP LKPDD QYFDKLLVDVDE+TLS EEQ+ERKIMKLLLKIKNGTPPMRKAALRQ+TDKARE GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDN+DEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLR+LVEIIEHGLVDEQQKVRTI+ALAIAALAE+ATPYGIESFDSVLKPLWKGI+QHRGKGLAAFLKAIGYLIPLMDAEYA +YTREVM+ILIREFQSPDEEMKKIVLKVVKQCC TDGVEANYIK EILP FFK+FW HRMALDRRNYRQLVDTTVE+ANKVGAA I+ R+VDDLKDE EQYRKMV+ETIEK+M NLGA++ID +LEEQLIDGILYAFQEQT ED VMLNGFGTV+NA G R KPYLPQICGT+LWRL+NK+AKVRQQAADLI+RT+VVMKTC EEKLMGHLGVVLYE GEEYPEVLGSILGA+K+IVNVIGM KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE+VSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP DVLATLLNNLKVQERQNRVC TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A ++HMS+GV+GFGCED+L HL+N+VWPN+FETSPHVI AV+ ALEG RV +GP +++QY +QGLFHPARKVRD+YWKIYN +YI SQDAL+A YP I N+ +N+++R EL YI
Sbjct: 10 DIEAQIREIQGKKAALD--EAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK-----------GSETPG-------------ATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE-RDTPGHGSGWAETPRTDR-GGDSIGETPTPGASKRKSRWDETPASQMGGSTP----------------------VLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDR--TMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVC--------------------TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYI 1303 The following BLAST results are available for this feature:
BLAST of TCONS_00005066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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