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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005052 ID=TCONS_00005052|Name=TCONS_00005052|organism=Clytia hemisphaerica|type=transcript|length=797bp
ATTGCATAGTCTGaactttgtttatattttctttcataACTAGTGAATAT
AAAAAGTGAATCAACTGTATCTGTGAAAGAAGAATATTGTCTTTCAAAAT
GCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGTTGTAGTACAT
GTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGCAAAAAATGAT
CGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTACAAAAGACAG
GGTTGCTGATGCGGTTTTTAAgaacaaagttgaaaaaaacaCAATCTTCA
TCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATTATCCTTCACGA
AAAGAACTCAGAGCTGAAGCTTATCCTCTACCAACCCAAAATCTCCCTCA
AAAGTCACTACCCATAGCAGACACACCACAGCGATCAACGACATCAATAC
AGAAACGAGATCAGTACCAGCAGTCCAATGATCAGGGTAGTATTGTTGAT
AAGAAATATAAAAACTTCCAAGATTTTGTCAAAAGAGCTGACAAATTGAA
GCTCCCTCGTGGCTGGAAAATTACCCATCATGAACAGCTGACTGAAGTCG
TCAAGGAGGATGAAAGTCTATCCATACCGGCCTTCCAAATATTCATCAAC
AGTAACACAGACTTGAGCATCAATCTACGTTGCTATGGCTGGTTGCTGCC
AAAGGAATCACCAATTATGAAAGAAATTGATTCCTTAAATGACATTTACT
TGTCCGATTATATTCAAGTTTTGGAAAGCTATCATCTTTGTAAAggt Run BLAST on NCBI protein sequence of TCONS_00005052-protein >TCONS_00005052-protein ID=TCONS_00005052-protein|Name=TCONS_00005052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MPGRGNGAHCAIFGCSTCRKHGLSLFRLPTAKNDRFAQWRSDMINSITKD
RVADAVFKNKVEKNTIFICERHFREEDMYHYPSRKELRAEAYPLPTQNLP
QKSLPIADTPQRSTTSIQKRDQYQQSNDQGSIVDKKYKNFQDFVKRADKL
KLPRGWKITHHEQLTEVVKEDESLSIPAFQIFINSNTDLSINLRCYGWLL
PKESPIMKEIDSLNDIYLSDYIQVLESYHLCKG Run BLAST on NCBI transcript from alignment at sc0000050:584678..585670- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005052 ID=TCONS_00005052|Name=TCONS_00005052|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0000050:584678..585670- (Clytia hemisphaerica)
ATTGCATAGTCTGAACTTTGTTTATATTTTCTTTCATAACTAGTGAATAT
AAAAAGTGAATCAACTGTATCTGTGAAAGAAGAATATTGTCTTTCAAAAT
GCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGTTGTAGTACAT
GTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGCAAAAAATGAT
CGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTACAAAAGACAG
GGTTGCTGATGCGGTTTTTAAGAACAAAGTTGAAAAAAACACAATCTTCA
TCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATTGTAAGTATAGA
TGAATAAATCTACAAATATTAATGAAGTTATGATGCAACATATAATGTCT
TGGTTGGTCTAACAATATCTAAGTACGATAAATAATCCAAAAGTATGAAA
ATTCATACAAGTGCATGATCAGTTTTAGGTTTCACCTTTAATACCTAAGA
TAAATATTATAAAAGTATTTCAATTTTTCCCTCAGATCCTTCACGAAAAG
AACTCAGAGCTGAAGCTTATCCTCTACCAACCCAAAATCTCCCTCAAAAG
TCACTACCCATAGCAGACACACCACAGCGATCAACGACATCAATACAGAA
ACGAGATCAGTACCAGCAGTCCAATGATCAGGGTAGTATTGTTGATAAGA
AATATAAAAACTTCCAAGATTTTGTCAAAAGAGCTGACAAATTGAAGCTC
CCTCGTGGCTGGAAAATTACCCATCATGAACAGCTGACTGAAGTCGTCAA
GGAGGATGAAAGTCTATCCATACCGGCCTTCCAAATATTCATCAACAGTA
ACACAGACTTGAGCATCAATCTACGTTGCTATGGCTGGTTGCTGCCAAAG
GAATCACCAATTATGAAAGAAATTGATTCCTTAAATGACATTTACTTGTC
CGATTATATTCAAGTTTTGGAAAGCTATCATCTTTGTAAAGGT Coding sequence (CDS) from alignment at sc0000050:584678..585670- >TCONS_00005052 ID=TCONS_00005052|Name=TCONS_00005052|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000050:584678..585670- (Clytia hemisphaerica)
ATCCTTCACGAAAAGAACTCAGAGCTGAAGCTTATCCTCTACCAACCCAA
AATCTCCCTCAAAAGTCACTACCCATAGCAGACACACCACAGCGATCAAC
GACATCAATACAGAAACGAGATCAGTACCAGCAGTCCAATGATCAGGGTA
GTATTGTTGATAAGAAATATAAAAACTTCCAAGATTTTGTCAAAAGAGCT
GACAAATTGAAGCTCCCTCGTGGCTGGAAAATTACCCATCATGAACAGCT
GACTGAAGTCGTCAAGGAGGATGAAAGTCTATCCATACCGGCCTTCCAAA
TATTCATCAACAGTAACACAGACTTGAGCATCAATCTACGTTGCTATGGC
TGGTTGCTGCCAAAGGAATCACCAATTATGAAAGAAATTGATTCCTTAAA
TGACATTTACTTGTCCGATTATATTCAAGTTTTGGAAAGCTATCATCTTT
GTAAAGGTATGCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGT
TGTAGTACATGTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGC
AAAAAATGATCGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTA
CAAAAGACAGGGTTGCTGATGCGGTTTTTAAGAACAAAGTTGAAAAAAAC
ACAATCTTCATCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATTA
TCCTTCACGAAAAGAACTCAGAGCTGAAGCTTATCCTCTACCAACCCAAA
ATCTCCCTCAAAAGTCACTACCCATAGCAGACACACCACAGCGATCAACG
ACATCAATACAGAAACGAGATCAGTACCAGCAGTCCAATGATCAGGGTAG
TATTGTTGATAAGAAATATAAAAACTTCCAAGATTTTGTCAAAAGAGCTG
ACAAATTGAAGCTCCCTCGTGGCTGGAAAATTACCCATCATGAACAGCTG
ACTGAAGTCGTCAAGGAGGATGAAAGTCTATCCATACCGGCCTTCCAAAT
ATTCATCAACAGTAACACAGACTTGAGCATCAATCTACGTTGCTATGGCT
GGTTGCTGCCAAAGGAATCACCAATTATGAAAGAAATTGATTCCTTAAAT
GACATTTACTTGTCCGATTATATTCAAGTTTTGGAAAGCTATCATCTTTG
TAAAGGTATGCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGTT
GTAGTACATGTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGCA
AAAAATGATCGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTAC
AAAAGACAGGGTTGCTGATGCGGTTTTTAAGAACAAAGTTGAAAAAAACA
CAATCTTCATCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005052-exon-sc0000050-1575043694:585332..585670 | TCONS_00005052-exon-sc0000050-1575043694:585332..585670 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1575043694:584678..585135 | TCONS_00005052-exon-sc0000050-1575043694:584678..585135 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1510915933:585332..585670 | TCONS_00005052-exon-sc0000050-1510915933:585332..585670 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1510915933:584678..585135 | TCONS_00005052-exon-sc0000050-1510915933:584678..585135 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1491911889:585332..585670 | TCONS_00005052-exon-sc0000050-1491911889:585332..585670 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1491911889:584678..585135 | TCONS_00005052-exon-sc0000050-1491911889:584678..585135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:584678..585670 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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