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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005049 ID=TCONS_00005049|Name=TCONS_00005049|organism=Clytia hemisphaerica|type=transcript|length=1061bp
gaaaattttggtttataagtTACAACAGCAAATAATCGAAGATGAGTTTC
CGATCACATTTTCGAtgttcaaatttgaaattgaaacatgaAGAATCAAA
AGATTTCTATATATCTACGtGCTCGTGTATCAAACCAAAGATTCTGGTCA
TCATTCGTGGATTACTGGCAATCTATTGTATCACATTGCTCACTTTTAAC
ATGATATATTACTTTCATCATCAACCCAACCCTTCAAGATGGTTCACTTT
TTACGAGAATCTAACCTATATCATTCTTACATTATATTTGTCAATGGCTT
TTATCGTAACTGGTGCTGAAGTTTTGACATTGCCTAAAAGTCCTGAGTCT
AACAGGGTGGATTTAAGTTCGCCAGACCAATGGAATGAATACTCAATGGA
TCATTTAAGTCACGTGGATATCACCAAAAATGACCAGGATCCAAGCACAG
CTGACCAGTATTCATCTTATTCGAGTTTTTCGTCGAAAATTCGCCAGCGA
CTCAGAAGACGGAAACATATGATGAACAGTGTCTTAACCGTTAACACTGg
ttgcaaaatattttgggtGCTCAGAAACATTGCTGCAACTTCAACAGTTG
TATGTGTAGGTATCTATTGGCCATATCTACACAActataaaaaagatttc
caaCTCAATTTGTCAGAGTATATTACCATAGACTCGCATGGCATCAATTT
AGGTCTAGTCATAATAGACTTTCTACTAACTCGAACACCATTTCGCATTC
TTCATTTCGTCCATCCGCTCATTTTCAATCTTCTATACATCATATTCAAT
TATCTATATTCAACAATGATTGGAGAAATCTACAAAGACATTGACTGGAG
TAGCTCACCTCTGGTAACTACTGGTATATTTGCAGCTGTTTtagttttca
tgttattatCCCATTTTGCGCTCTTCTTATTACATTGCTGTGTGGTGTAT
GTGGACACAAAAACTAAGATTGGATTTTTCATTGTATTGTTTTGTCTACT
ATTCATTCTATTCCTAGTTTTCACTTTATTgatataaactttttttctat
cgCACTAGAAT Run BLAST on NCBI protein sequence of TCONS_00005049-protein >TCONS_00005049-protein ID=TCONS_00005049-protein|Name=TCONS_00005049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MSFRSHFRCSNLKLKHEESKDFYISTCSCIKPKILVIIRGLLAIYCITLL
TFNMIYYFHHQPNPSRWFTFYENLTYIILTLYLSMAFIVTGAEVLTLPKS
PESNRVDLSSPDQWNEYSMDHLSHVDITKNDQDPSTADQYSSYSSFSSKI
RQRLRRRKHMMNSVLTVNTGCKIFWVLRNIAATSTVVCVGIYWPYLHNYK
KDFQLNLSEYITIDSHGINLGLVIIDFLLTRTPFRILHFVHPLIFNLLYI
IFNYLYSTMIGEIYKDIDWSSSPLVTTGIFAAVLVFMLLSHFALFLLHCC
VVYVDTKTKIGFFIVLFCLLFILFLVFTLLI Run BLAST on NCBI transcript from alignment at sc0000050:506958..508760- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005049 ID=TCONS_00005049|Name=TCONS_00005049|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at sc0000050:506958..508760- (Clytia hemisphaerica)
GAAAATTTTGGTTTATAAGTTACAACAGCAAATAATCGAAGATGAGTTTC
CGATCACATTTTCGATGTTCAAATTTGAAATTGAAACATGAAGAATCAAA
AGATTTCTATATATCTACGGTAAGATTTGATTTTTTGAATTTTCACTAAA
TAAATTTCTTAAAATTTCATTCATATCGAAAAACGCTATACAGTAATAAG
GCCCCATTAAAAGAAGAAATATTTTCAAACCCTGATTTAGGCGAGTCTTT
TTTATTTTGTTGTTTTACGGGCCAAGCTACTTTAATGGGATAAATTTTTG
CGGGGATTAAATTTCGCGGTTGAGCTCATCCGCGAAATTTTAAGATTTCG
CGGGGATTAATTTTCGCGGATGGCACTATTGGGGGGCATTATTTTCTCGA
TTTTGTGACTTTTACTGTCAAATCATGCGTATTGGTTGTTGAAATACACA
TTATTTGCGCCTCTTTGATGCAAGTAACCATTCAAATAGTATTCATTTGA
CATATTTTGAGTTTTGTTTAGAAATATTTCGCGGATGGGCCTTTTTCAAA
TTTCCAATGGGACTTATCGAATCTCCTAAAAAAACTTCTACATCTTGACA
AAAATGCAAAATATAGAAAATAAAAAGACACAAAAAGCTCGAATTCATGG
ATTAAATGAAAAATTGAACATAAAACTCTCAAAACCTTGGAAAAACACCA
AAATCTTGAAAATTTGGCAGTCTGTAAAGCAATGAAAATAAAAATTTCAC
TCACATTTGAAGACTTGATCGAAACAGTTTCCAATCGAAAGTGGAAAATA
ATTTACAATTTGGGAGAGGCTTGTATCTCTATAGAGACTTAATCATACTT
TTTTTTTACAGTGCTCGTGTATCAAACCAAAGATTCTGGTCATCATTCGT
GGATTACTGGCAATCTATTGTATCACATTGCTCACTTTTAACATGATATA
TTACTTTCATCATCAACCCAACCCTTCAAGATGGTTCACTTTTTACGAGA
ATCTAACCTATATCATTCTTACATTATATTTGTCAATGGCTTTTATCGTA
ACTGGTGCTGAAGTTTTGACATTGCCTAAAAGTCCTGAGTCTAACAGGGT
GGATTTAAGTTCGCCAGACCAATGGAATGAATACTCAATGGATCATTTAA
GTCACGTGGATATCACCAAAAATGACCAGGATCCAAGCACAGCTGACCAG
TATTCATCTTATTCGAGTTTTTCGTCGAAAATTCGCCAGCGACTCAGAAG
ACGGAAACATATGATGAACAGTGTCTTAACCGTTAACACTGGTTGCAAAA
TATTTTGGGTGCTCAGAAACATTGCTGCAACTTCAACAGTTGTATGTGTA
GGTATCTATTGGCCATATCTACACAACTATAAAAAAGATTTCCAACTCAA
TTTGTCAGAGTATATTACCATAGACTCGCATGGCATCAATTTAGGTCTAG
TCATAATAGACTTTCTACTAACTCGAACACCATTTCGCATTCTTCATTTC
GTCCATCCGCTCATTTTCAATCTTCTATACATCATATTCAATTATCTATA
TTCAACAATGATTGGAGAAATCTACAAAGACATTGACTGGAGTAGCTCAC
CTCTGGTAACTACTGGTATATTTGCAGCTGTTTTAGTTTTCATGTTATTA
TCCCATTTTGCGCTCTTCTTATTACATTGCTGTGTGGTGTATGTGGACAC
AAAAACTAAGATTGGATTTTTCATTGTATTGTTTTGTCTACTATTCATTC
TATTCCTAGTTTTCACTTTATTGATATAAACTTTTTTTCTATCGCACTAG
AAT Coding sequence (CDS) from alignment at sc0000050:506958..508760- >TCONS_00005049 ID=TCONS_00005049|Name=TCONS_00005049|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000050:506958..508760- (Clytia hemisphaerica)
TGCTCGTGTATCAAACCAAAGATTCTGGTCATCATTCGTGGATTACTGGC
AATCTATTGTATCACATTGCTCACTTTTAACATGATATATTACTTTCATC
ATCAACCCAACCCTTCAAGATGGTTCACTTTTTACGAGAATCTAACCTAT
ATCATTCTTACATTATATTTGTCAATGGCTTTTATCGTAACTGGTGCTGA
AGTTTTGACATTGCCTAAAAGTCCTGAGTCTAACAGGGTGGATTTAAGTT
CGCCAGACCAATGGAATGAATACTCAATGGATCATTTAAGTCACGTGGAT
ATCACCAAAAATGACCAGGATCCAAGCACAGCTGACCAGTATTCATCTTA
TTCGAGTTTTTCGTCGAAAATTCGCCAGCGACTCAGAAGACGGAAACATA
TGATGAACAGTGTCTTAACCGTTAACACTGGTTGCAAAATATTTTGGGTG
CTCAGAAACATTGCTGCAACTTCAACAGTTGTATGTGTAGGTATCTATTG
GCCATATCTACACAACTATAAAAAAGATTTCCAACTCAATTTGTCAGAGT
ATATTACCATAGACTCGCATGGCATCAATTTAGGTCTAGTCATAATAGAC
TTTCTACTAACTCGAACACCATTTCGCATTCTTCATTTCGTCCATCCGCT
CATTTTCAATCTTCTATACATCATATTCAATTATCTATATTCAACAATGA
TTGGAGAAATCTACAAAGACATTGACTGGAGTAGCTCACCTCTGGTAACT
ACTGGTATATTTGCAGCTGTTTTAGTTTTCATGTTATTATCCCATTTTGC
GCTCTTCTTATTACATTGCTGTGTGGTGTATGTGGACACAAAAACTAAGA
TTGGATTTTTCATTGTATTGTTTTGTCTACTATTCATTCTATTCCTAGTT
TTCACTTTATTGATATAAATGAGTTTCCGATCACATTTTCGATGTTCAAA
TTTGAAATTGAAACATGAAGAATCAAAAGATTTCTATATATCTACGTGCT
CGTGTATCAAACCAAAGATTCTGGTCATCATTCGTGGATTACTGGCAATC
TATTGTATCACATTGCTCACTTTTAACATGATATATTACTTTCATCATCA
ACCCAACCCTTCAAGATGGTTCACTTTTTACGAGAATCTAACCTATATCA
TTCTTACATTATATTTGTCAATGGCTTTTATCGTAACTGGTGCTGAAGTT
TTGACATTGCCTAAAAGTCCTGAGTCTAACAGGGTGGATTTAAGTTCGCC
AGACCAATGGAATGAATACTCAATGGATCATTTAAGTCACGTGGATATCA
CCAAAAATGACCAGGATCCAAGCACAGCTGACCAGTATTCATCTTATTCG
AGTTTTTCGTCGAAAATTCGCCAGCGACTCAGAAGACGGAAACATATGAT
GAACAGTGTCTTAACCGTTAACACTGGTTGCAAAATATTTTGGGTGCTCA
GAAACATTGCTGCAACTTCAACAGTTGTATGTGTAGGTATCTATTGGCCA
TATCTACACAACTATAAAAAAGATTTCCAACTCAATTTGTCAGAGTATAT
TACCATAGACTCGCATGGCATCAATTTAGGTCTAGTCATAATAGACTTTC
TACTAACTCGAACACCATTTCGCATTCTTCATTTCGTCCATCCGCTCATT
TTCAATCTTCTATACATCATATTCAATTATCTATATTCAACAATGATTGG
AGAAATCTACAAAGACATTGACTGGAGTAGCTCACCTCTGGTAACTACTG
GTATATTTGCAGCTGTTTTAGTTTTCATGTTATTATCCCATTTTGCGCTC
TTCTTATTACATTGCTGTGTGGTGTATGTGGACACAAAAACTAAGATTGG
ATTTTTCATTGTATTGTTTTGTCTACTATTCATTCTATTCCTAGTTTTCA
CTTTATTGATATAAATGAGTTTCCGATCACATTTTCGATGTTCAAATTTG
AAATTGAAACATGAAGAATCAAAAGATTTCTATATATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005049-exon-sc0000050-1575043694:508642..508760 | TCONS_00005049-exon-sc0000050-1575043694:508642..508760 | Clytia hemisphaerica | exon |
| TCONS_00005049-exon-sc0000050-1575043694:506958..507899 | TCONS_00005049-exon-sc0000050-1575043694:506958..507899 | Clytia hemisphaerica | exon |
| TCONS_00005049-exon-sc0000050-1510915933:508642..508760 | TCONS_00005049-exon-sc0000050-1510915933:508642..508760 | Clytia hemisphaerica | exon |
| TCONS_00005049-exon-sc0000050-1510915933:506958..507899 | TCONS_00005049-exon-sc0000050-1510915933:506958..507899 | Clytia hemisphaerica | exon |
| TCONS_00005049-exon-sc0000050-1491911889:508642..508760 | TCONS_00005049-exon-sc0000050-1491911889:508642..508760 | Clytia hemisphaerica | exon |
| TCONS_00005049-exon-sc0000050-1491911889:506958..507899 | TCONS_00005049-exon-sc0000050-1491911889:506958..507899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:506958..508760 - |
Blast
The following BLAST results are available for this feature:
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