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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005048 ID=TCONS_00005048|Name=TCONS_00005048|organism=Clytia hemisphaerica|type=transcript|length=1447bp
aaagGATAAAGATAAAAGTTACTTACTTTCCTTTAGGAAGTTTCTATGGA
TTAAAAATTGAGAGTTTGTTTCTTGAGGATACACTAGAACTGATACAATT
GAAGATACAATATTTTACTTCCATTGGAAGGCATATTTTGTCTGTCAATC
TCGTATTTTTGGTGTCACCATGGAGATTGGCAATGATAAAGATTCAAACC
TGAATGTAACAGATCCTTGGTCTTTAGCCACCAAGAAGTCTCCTTCAAAT
GAGAAACAACAACCATTGAACCGTATAGTGAAAAACTGTATTTCTTTTCC
ATCTTCAATAAACGCTATACAAAATCAAGAAACAAGCGCCATTCAAACAA
TGGACTATAAACAATGCACTAACTCAACGTCAACAAGACTCCAAACTTCC
AAACTCACAACATACTCACATCAAAATTATAACAGGAATTCAAAAGGTCG
GACGTTATTAGATTCTAGAACTGGACATACTATTTTAACAAACAGTACAA
CACACTCACCAATCGTCTCCGTAAAGATTCATTCATCAAACTCATTATAT
CATCCAAGATACTCACAACAGAACCAAAGAGAATCTACGAGCACTTACAC
TGAAAAGattcaaacttttaaaaaattgatcaaCAAAAGAAAACCATACT
GGAAGCAACCAAAGACATTATTACCATACCACAACAATCACCATATCTTA
GAATCTCAATTATCAATAAAGGACCATTTATTACACCAAAGTTACCAGAA
ACGTAAAACACTTTTACCAACTCCTCGAAAAACCTTATTGGAACCAGCCA
GAGAATTACAACCGTTGATGCCGGAACTTCAGAATAGTAATTTTACAGAC
ACACATTTAATGATGATACGAGCTATCAAATTGGGTATCAAACATAAAAT
TGATTCCTAAAAACACAGCTATTCGTCGTTTTACTCTgggggtacctaat
agccgtcacCCCCGCTGAttattcgaaaattttccacccaggacattgtt
attccaaacccccccgcttattaaaatatttttgaaagtcccCTCTTTTg
ttgtattagcctcctttaaAAAGATTTACCACCCATAATTTCTAttccga
ccccccccctgcttattaagttttgagatttttccaacccccccttaTTC
CAACCCTCCcgactattaggtacccgagagtaatcaCTAGGTtactacag
tggagtctccataactcgaacacgcactgGGAACACaattttgttcgagt
taaggaaatttcgagttatggaaggTGTACACAATGCTTGGTTAACAGAA
GGGATGATAAAACTTTTTCTCGAGTGAAGGAGACGTTCGAGTTATATaca
ggttcgagttaaagagaatcCAACTGCAGTACTTGGCCATCTTTATTAGA
CGCTATTCGCTACAGGTCACTTCTTgttattcatgacgtaatctttt Run BLAST on NCBI protein sequence of TCONS_00005048-protein >TCONS_00005048-protein ID=TCONS_00005048-protein|Name=TCONS_00005048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MEIGNDKDSNLNVTDPWSLATKKSPSNEKQQPLNRIVKNCISFPSSINAI
QNQETSAIQTMDYKQCTNSTSTRLQTSKLTTYSHQNYNRNSKGRTLLDSR
TGHTILTNSTTHSPIVSVKIHSSNSLYHPRYSQQNQRESTSTYTEKIQTF
KKLINKRKPYWKQPKTLLPYHNNHHILESQLSIKDHLLHQSYQKRKTLLP
TPRKTLLEPARELQPLMPELQNSNFTDTHLMMIRAIKLGIKHKIDS Run BLAST on NCBI transcript from alignment at sc0000050:478811..480459- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005048 ID=TCONS_00005048|Name=TCONS_00005048|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at sc0000050:478811..480459- (Clytia hemisphaerica)
AAAGGATAAAGATAAAAGTTACTTACTTTCCTTTAGGAAGTTTCTATGGA
TTAAAAATTGAGAGTTTGTTTCTTGAGGATACACTAGAACTGATACAATT
GAAGATACAATATTTTACTTCCATTGGAAGGCATATTTTGTCTGTCAATC
TCGTATTTTTGGTGTCACCATGGAGATTGGCAATGATAAAGATTCAAACC
TGAATGTAACAGATCCTTGGTCTTTAGCCACCAAGAAGTCTCCTTCAAAT
GAGAAACAACAACCATTGAACCGTATAGTGAAAAACTGTATTTCTTTTCC
ATCTTCAATAAACGCTATACAAAATCAAGAAACAAGCGCCATTCAAACAA
TGGACTATAAACAATGCACTAACTCAACGTCAACAAGACTCCAAACTTCC
AAACTCACAACATACTCACATCAAAATTATAACAGGAATTCAAAAGGTCG
GACGTTATTAGATTCTAGAACTGGACATACTATTTTAACAAACAGTACAA
CACACTCACCAATCGTCTCCGTAAAGATTCATTCATCAAACTCATTATAT
CATCCAAGATGNACAATGCACTAACTCAACGTCAACAAGTCTCCAAGCTT
CCAAATCCACAACATACTCACATGGAAATAATAACCGTTACTCAAAAATT
CGGACGTTATTAGATTCTAAAACTGGACATACTATTTTAACAAACAGTAC
AACGCATTCACCAATCGTCTCCGTAAAGGTTCATTCATCAAACTCATTAC
ATCATCCAAGATACTCACAACAGAACCAAAGAGAATCTACGAGCACTTAC
ACTGAAAAGATTCAAACTTTTAAAAAATTGATCAACAAAAGAAAACCATA
CTGGAAGCAACCAAAGACATTATTACCATACCACAACAATCACCATATCT
TAGAATCTCAATTATCAATAAAGGACCATTTATTACACCAAAGTTACCAG
AAACGTAAAACACTTTTACCAACTCCTCGAAAAACCTTATTGGAACCAGC
CAGAGAATTACAACCGTTGATGCCGGAACTTCAGAATAGTAATTTTACAG
ACACACATTTAATGATGATACGAGCTATCAAATTGGGTATCAAACATAAA
ATTGATTCCTAAAAACACAGCTATTCGTCGTTTTACTCTGGGGGTACCTA
ATAGCCGTCACCCCCGCTGATTATTCGAAAATTTTCCACCCAGGACATTG
TTATTCCAAACCCCCCCGCTTATTAAAATATTTTTGAAAGTCCCCTCTTT
TGTTGTATTAGCCTCCTTTAAAAAGATTTACCACCCATAATTTCTATTCC
GACCCCCCCCCTGCTTATTAAGTTTTGAGATTTTTCCAACCCCCCCTTAT
TCCAACCCTCCCGACTATTAGGTACCCGAGAGTAATCACTAGGTTACTAC
AGTGGAGTCTCCATAACTCGAACACGCACTGGGAACACAATTTTGTTCGA
GTTAAGGAAATTTCGAGTTATGGAAGGTGTACACAATGCTTGGTTAACAG
AAGGGATGATAAAACTTTTTCTCGAGTGAAGGAGACGTTCGAGTTATATA
CAGGTTCGAGTTAAAGAGAATCCAACTGCAGTACTTGGCCATCTTTATTA
GACGCTATTCGCTACAGGTCACTTCTTGTTATTCATGACGTAATCTTTT Coding sequence (CDS) from alignment at sc0000050:478811..480459- >TCONS_00005048 ID=TCONS_00005048|Name=TCONS_00005048|organism=Clytia hemisphaerica|type=CDS|length=1482bp|location=Sequence derived from alignment at sc0000050:478811..480459- (Clytia hemisphaerica)
ATCATCCAAGATACTCACAACAGAACCAAAGAGAATCTACGAGCACTTAC
ACTGAAAAGATTCAAACTTTTAAAAAATTGATCAACAAAAGAAAACCATA
CTGGAAGCAACCAAAGACATTATTACCATACCACAACAATCACCATATCT
TAGAATCTCAATTATCAATAAAGGACCATTTATTACACCAAAGTTACCAG
AAACGTAAAACACTTTTACCAACTCCTCGAAAAACCTTATTGGAACCAGC
CAGAGAATTACAACCGTTGATGCCGGAACTTCAGAATAGTAATTTTACAG
ACACACATTTAATGATGATACGAGCTATCAAATTGGGTATCAAACATAAA
ATTGATTCCTAAATGGAGATTGGCAATGATAAAGATTCAAACCTGAATGT
AACAGATCCTTGGTCTTTAGCCACCAAGAAGTCTCCTTCAAATGAGAAAC
AACAACCATTGAACCGTATAGTGAAAAACTGTATTTCTTTTCCATCTTCA
ATAAACGCTATACAAAATCAAGAAACAAGCGCCATTCAAACAATGGACTA
TAAACAATGCACTAACTCAACGTCAACAAGACTCCAAACTTCCAAACTCA
CAACATACTCACATCAAAATTATAACAGGAATTCAAAAGGTCGGACGTTA
TTAGATTCTAGAACTGGACATACTATTTTAACAAACAGTACAACACACTC
ACCAATCGTCTCCGTAAAGATTCATTCATCAAACTCATTATATCATCCAA
GATACTCACAACAGAACCAAAGAGAATCTACGAGCACTTACACTGAAAAG
ATTCAAACTTTTAAAAAATTGATCAACAAAAGAAAACCATACTGGAAGCA
ACCAAAGACATTATTACCATACCACAACAATCACCATATCTTAGAATCTC
AATTATCAATAAAGGACCATTTATTACACCAAAGTTACCAGAAACGTAAA
ACACTTTTACCAACTCCTCGAAAAACCTTATTGGAACCAGCCAGAGAATT
ACAACCGTTGATGCCGGAACTTCAGAATAGTAATTTTACAGACACACATT
TAATGATGATACGAGCTATCAAATTGGGTATCAAACATAAAATTGATTCC
TAAATGGAGATTGGCAATGATAAAGATTCAAACCTGAATGTAACAGATCC
TTGGTCTTTAGCCACCAAGAAGTCTCCTTCAAATGAGAAACAACAACCAT
TGAACCGTATAGTGAAAAACTGTATTTCTTTTCCATCTTCAATAAACGCT
ATACAAAATCAAGAAACAAGCGCCATTCAAACAATGGACTATAAACAATG
CACTAACTCAACGTCAACAAGACTCCAAACTTCCAAACTCACAACATACT
CACATCAAAATTATAACAGGAATTCAAAAGGTCGGACGTTATTAGATTCT
AGAACTGGACATACTATTTTAACAAACAGTACAACACACTCACCAATCGT
CTCCGTAAAGATTCATTCATCAAACTCATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005048-exon-sc0000050-1575043694:479912..480459 | TCONS_00005048-exon-sc0000050-1575043694:479912..480459 | Clytia hemisphaerica | exon |
| TCONS_00005048-exon-sc0000050-1575043694:478811..479709 | TCONS_00005048-exon-sc0000050-1575043694:478811..479709 | Clytia hemisphaerica | exon |
| TCONS_00005048-exon-sc0000050-1510915933:479912..480459 | TCONS_00005048-exon-sc0000050-1510915933:479912..480459 | Clytia hemisphaerica | exon |
| TCONS_00005048-exon-sc0000050-1510915933:478811..479709 | TCONS_00005048-exon-sc0000050-1510915933:478811..479709 | Clytia hemisphaerica | exon |
| TCONS_00005048-exon-sc0000050-1491911889:479912..480459 | TCONS_00005048-exon-sc0000050-1491911889:479912..480459 | Clytia hemisphaerica | exon |
| TCONS_00005048-exon-sc0000050-1491911889:478811..479709 | TCONS_00005048-exon-sc0000050-1491911889:478811..479709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:478811..480459 - |
Blast
The following BLAST results are available for this feature:
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