TCONS_00005046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005046
Unique NameTCONS_00005046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005046 ID=TCONS_00005046|Name=TCONS_00005046|organism=Clytia hemisphaerica|type=transcript|length=1080bp
GTTTGATTTGCTGATTGCGGAATTAACATGAGCTAAAATTTAGCTCTAAT
TATTAATTTATTATGTCAATGTTTCACGATTTTACGCCACCGTTTGCAAA
CGGTGATCTATGATCTACTGATTACATTCCATTGTAAAGCTATCATCGAG
GTGCGCTTTTGGGAATTGGAATTCTAAATTCAAACATTGAATTTGTACAT
GAACTGGAGAGGGCGAGAATAATATTTGATGAACTTGTGAGAGAAAGTCA
TTCTTTGGATAAAGATGCAGTGTTCACAAGTTTTAGTAATTTCCATTGCA
GCTTCCTTCATATTCCATGGGATTCAATCGAGACCTCTTACAGATAGAGA
AATTGTAAAGGTGTTGAATGATGTACTTCAAGATTACTCCAGAACGTTGA
CAGCACAAGACCATTCGAATGACGGATTTGCCAATTTGGCCGACCCTGGA
GTTGCAGTACGTGGCCCAGATGATCCACTCGAATTCTTTGTCATTAAAAA
GGATGGAACATCATCAAACACAGATAATCGATTAACTAAAATCACATCGA
CACGTCCGACATTATCAACCAATGTTGCCTCTTCTACATCGACCGATACA
GTAACGACTTCTCGACCAAAGACATCTCGAGCTACGATATCTCGACCAAC
GACATCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAACGACCT
CTCGACCAACGACCTCTCGACCAACGACATCTCGACCAACGACATCAACT
GACATCACAATTACAAAAGAAACAACCGCCCCTAAGACGCGCCCAACCAC
CCCAAACAAGGCACCCATTGGACAAAAGTTTCGCCAAATTACCATGAATT
GTGGACCTGGTGACAAAGAAGGACAATATGTCTCCGGTGAAGCCAATAGT
GTTGTTGTTAATATTAATGTTTATAAAAAGTGAATATTTAGTTTCTTACT
CGTGTATAGAATTTTGTTTGTTAATTTTCCTGAAGAATAAGAATCATTTA
AAACTTTGCAGTTCTTTTATCTCCGTTCGTTTAATTTGTATGTATTTTTT
CGGAATTAAAgtaatgaaatttatttttca
Run BLAST on NCBI

protein sequence of TCONS_00005046-protein

>TCONS_00005046-protein ID=TCONS_00005046-protein|Name=TCONS_00005046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MQCSQVLVISIAASFIFHGIQSRPLTDREIVKVLNDVLQDYSRTLTAQDH
SNDGFANLADPGVAVRGPDDPLEFFVIKKDGTSSNTDNRLTKITSTRPTL
STNVASSTSTDTVTTSRPKTSRATISRPTTSRPTTSRPTTSRPTTSRPTT
SRPTTSRPTTSTDITITKETTAPKTRPTTPNKAPIGQKFRQITMNCGPGD
KEGQYVSGEANSVVVNINVYKK
Run BLAST on NCBI

transcript from alignment at sc0000050:461557..463506-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005046 ID=TCONS_00005046|Name=TCONS_00005046|organism=Clytia hemisphaerica|type=transcript|length=1950bp|location=Sequence derived from alignment at sc0000050:461557..463506- (Clytia hemisphaerica)
GTTTGATTTGCTGATTGCGGAATTAACATGAGCTAAAATTTAGCTCTAAT
TATTAATTTATTATGTCAATGTTTCACGATTTTACGCCACCGTTTGCAAA
CGGTGATCTATGATCTACTGATTACATTCCATTGTAAAGCTATCATCGAG
GTGCGCTTTTGGGAATTGGAATTCTAAATTCAAACATTGAATTTGTACAT
GAACTGGAGAGGGCGAGAATAATATTTGATGAACTTGTGAGAGAAAGTCA
TTCTTTGGATAAAGATGCAGTGTTCACAAGTTTTAGTAATTTCCATTGCA
GCTTCCTTCATATTCCATGGGATTCAATCGAGACCTCTTACAGATAGAGA
AATTGGTAAGATAAACTTACTTATTTGTGTTCTATTTTATTTTAGAATTA
CATAAATCGAAGTGGGCTTCGTGATTCTTTGAGTTCTCAATTTTGAAGTT
TAGAATATTTTTTTCAGAGACTCTTAAATTTCAAAAGAAAATAAGGTATG
GCAAAGCCTGATTTTTGCAGTACAGATAAAAAAGCGGAAAACTAAAAAAT
TAAATCTGAAGTAAAAAGTTAACAAAATATTTTAGCCTCAGAATATTTTT
GATATAATTCTTTAAATATTGAGCCTTTTAAAGTAATTTTATATTTTATT
TCATTTGGTTGTGTGTTGTCAGTCTTTAGAAAATTGCTACCTCTGTCTCG
ACTAGCCGGTATGAACTTTGAGGGGTAGAATGCATGTCTTGTATTAGGAC
TAGGGAAAAAACATTTTTTACTTTCTTGGTGATGGTACCCACCAGATTTC
TACGACACAATGTCAGAATTATAAAAACTAATCCATTCTCCAACAGCAAA
ATATTTTCAAGAATTGGACCCAAATTATATAAAAATCGATAATATTTGAT
GTGGGATAATATCATTCAAAGTTTCAAAAACGTCAGCATCTTTCTATCTT
TTGTTCAATTTTGAATTTTTCGGAGAGTTGACCGTAAGTATAATCCCTCC
GGAACACAGAGACTTCATCATATTTAATATTTTAAGATTCTTATGGTTTT
CCTTTTACAGTAAAGGTGTTGAATGATGTACTTCAAGATTACTCCAGAAC
GTTGACAGCACAAGACCATTCGAATGACGGATTTGCCAATTTGGCCGACC
CTGGAGTTGCAGTACGTGGCCCAGATGATCCACTCGAATTCTTTGTCATT
AAAAAGGATGGAACATCATCAAACACAGATAATCGATTAACTAAAATCAC
ATCGACACGTCCGACATTATCAACCAATGTTGCCTCTTCTACATCGACCG
ATACAGTAACGACTTCTCGACCAAAGACATCTCGAGCTACGATATCTCAA
TCTACGATATCTCGATCGACAACATCTCGACCAACGACATCTCGACCAAC
GACATCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAACGACCT
CTCGACCAACGACCTCTCGACCAACGACATCTCAACCGACGACATCTCAG
CCAACAACCTCTCAACCAACGACATCTCAGCCAACAACATCTCAGCCAAC
AACATCTCGACCGACGACTTCTCAAACAACGACTTCTCGACCAACCACAT
CTCGACCAACGACATCAACTGACATCACAATTACAAAAGAAACAACCGCC
CCTAAGACGCGCCCAACCACCCCAAACAAGGCACCCATTGGACAAAAGTT
TCGCCAAATTACCATGAATTGTGGACCTGGTGACAAAGAAGGACAATATG
TCTCCGGTGAAGCCAATAGTGTTGTTGTTAATATTAATGTTTATAAAAAG
TGAATATTTAGTTTCTTACTCGTGTATAGAATTTTGTTTGTTAATTTTCC
TGAAGAATAAGAATCATTTAAAACTTTGCAGTTCTTTTATCTCCGTTCGT
TTAATTTGTATGTATTTTTTCGGAATTAAAGTAATGAAATTTATTTTTCA

Coding sequence (CDS) from alignment at sc0000050:461557..463506-

>TCONS_00005046 ID=TCONS_00005046|Name=TCONS_00005046|organism=Clytia hemisphaerica|type=CDS|length=2676bp|location=Sequence derived from alignment at sc0000050:461557..463506- (Clytia hemisphaerica)
ATCTCGACCAACGACATCAACTGACATCACAATTACAAAAGAAACAACCG
CCCCTAAGACGCGCCCAACCACCCCAAACAAGGCACCCATTGGACAAAAG
TTTCGCCAAATTACCATGAATTGTGGACCTGGTGACAAAGAAGGACAATA
TGTCTCCGGTGAAGCCAATAGTGTTGTTGTTAATATTAATGTTTATAAAA
AGTGAATCTCGACCAACGACATCTCGACCAACGACCTCTCGACCAACGAC
CTCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAACGACTAAAG
GTGTTGAATGATGTACTTCAAGATTACTCCAGAACGTTGACAGCACAAGA
CCATTCGAATGACGGATTTGCCAATTTGGCCGACCCTGGAGTTGCAGTAC
GTGGCCCAGATGATCCACTCGAATTCTTTGTCATTAAAAAGGATGGAACA
TCATCAAACACAGATAATCGATTAACTAAAATCACATCGACACGTCCGAC
ATTATCAACCAATGTTGCCTCTTCTACATCGACCGATACAGTAACGACTT
CTCGACCAAAGACATCTCGAGCTACGATATGCAGTGTTCACAAGTTTTAG
TAATTTCCATTGCAGCTTCCTTCATATTCCATGGGATTCAATCGAGACCT
CTTACAGATAGAGAAATTGATCTCGACCAACGACATCAACTGACATCACA
ATTACAAAAGAAACAACCGCCCCTAAGACGCGCCCAACCACCCCAAACAA
GGCACCCATTGGACAAAAGTTTCGCCAAATTACCATGAATTGTGGACCTG
GTGACAAAGAAGGACAATATGTCTCCGGTGAAGCCAATAGTGTTGTTGTT
AATATTAATGTTTATAAAAAGTGAATCTCGACCAACGACATCTCGACCAA
CGACCTCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAACGACC
TCTCGACCAACGACTAAAGGTGTTGAATGATGTACTTCAAGATTACTCCA
GAACGTTGACAGCACAAGACCATTCGAATGACGGATTTGCCAATTTGGCC
GACCCTGGAGTTGCAGTACGTGGCCCAGATGATCCACTCGAATTCTTTGT
CATTAAAAAGGATGGAACATCATCAAACACAGATAATCGATTAACTAAAA
TCACATCGACACGTCCGACATTATCAACCAATGTTGCCTCTTCTACATCG
ACCGATACAGTAACGACTTCTCGACCAAAGACATCTCGAGCTACGATATG
CAGTGTTCACAAGTTTTAGTAATTTCCATTGCAGCTTCCTTCATATTCCA
TGGGATTCAATCGAGACCTCTTACAGATAGAGAAATTGATCTCGACCAAC
GACATCAACTGACATCACAATTACAAAAGAAACAACCGCCCCTAAGACGC
GCCCAACCACCCCAAACAAGGCACCCATTGGACAAAAGTTTCGCCAAATT
ACCATGAATTGTGGACCTGGTGACAAAGAAGGACAATATGTCTCCGGTGA
AGCCAATAGTGTTGTTGTTAATATTAATGTTTATAAAAAGTGAATCTCGA
CCAACGACATCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAAC
GACCTCTCGACCAACGACCTCTCGACCAACGACTAAAGGTGTTGAATGAT
GTACTTCAAGATTACTCCAGAACGTTGACAGCACAAGACCATTCGAATGA
CGGATTTGCCAATTTGGCCGACCCTGGAGTTGCAGTACGTGGCCCAGATG
ATCCACTCGAATTCTTTGTCATTAAAAAGGATGGAACATCATCAAACACA
GATAATCGATTAACTAAAATCACATCGACACGTCCGACATTATCAACCAA
TGTTGCCTCTTCTACATCGACCGATACAGTAACGACTTCTCGACCAAAGA
CATCTCGAGCTACGATATGCAGTGTTCACAAGTTTTAGTAATTTCCATTG
CAGCTTCCTTCATATTCCATGGGATTCAATCGAGACCTCTTACAGATAGA
GAAATTGATCTCGACCAACGACATCAACTGACATCACAATTACAAAAGAA
ACAACCGCCCCTAAGACGCGCCCAACCACCCCAAACAAGGCACCCATTGG
ACAAAAGTTTCGCCAAATTACCATGAATTGTGGACCTGGTGACAAAGAAG
GACAATATGTCTCCGGTGAAGCCAATAGTGTTGTTGTTAATATTAATGTT
TATAAAAAGTGAATCTCGACCAACGACATCTCGACCAACGACCTCTCGAC
CAACGACCTCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAACG
ACTAAAGGTGTTGAATGATGTACTTCAAGATTACTCCAGAACGTTGACAG
CACAAGACCATTCGAATGACGGATTTGCCAATTTGGCCGACCCTGGAGTT
GCAGTACGTGGCCCAGATGATCCACTCGAATTCTTTGTCATTAAAAAGGA
TGGAACATCATCAAACACAGATAATCGATTAACTAAAATCACATCGACAC
GTCCGACATTATCAACCAATGTTGCCTCTTCTACATCGACCGATACAGTA
ACGACTTCTCGACCAAAGACATCTCGAGCTACGATATGCAGTGTTCACAA
GTTTTAGTAATTTCCATTGCAGCTTCCTTCATATTCCATGGGATTCAATC
GAGACCTCTTACAGATAGAGAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002856XLOC_002856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005046-exon-sc0000050-1575043694:463152..463506TCONS_00005046-exon-sc0000050-1575043694:463152..463506Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1575043694:462164..462446TCONS_00005046-exon-sc0000050-1575043694:462164..462446Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1575043694:462029..462118TCONS_00005046-exon-sc0000050-1575043694:462029..462118Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1575043694:461557..461908TCONS_00005046-exon-sc0000050-1575043694:461557..461908Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1510915933:463152..463506TCONS_00005046-exon-sc0000050-1510915933:463152..463506Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1510915933:462164..462446TCONS_00005046-exon-sc0000050-1510915933:462164..462446Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1510915933:462029..462118TCONS_00005046-exon-sc0000050-1510915933:462029..462118Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1510915933:461557..461908TCONS_00005046-exon-sc0000050-1510915933:461557..461908Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1491911889:463152..463506TCONS_00005046-exon-sc0000050-1491911889:463152..463506Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1491911889:462164..462446TCONS_00005046-exon-sc0000050-1491911889:462164..462446Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1491911889:462029..462118TCONS_00005046-exon-sc0000050-1491911889:462029..462118Clytia hemisphaericaexon
TCONS_00005046-exon-sc0000050-1491911889:461557..461908TCONS_00005046-exon-sc0000050-1491911889:461557..461908Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005046-proteinTCONS_00005046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:461557..463506 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
220.385	208.588	139.712	114.81	2.30174	1.50035	1.05688	0.632576	0.178435	0.46946	0.165069	0	0	0	0.0462582	0.0496421	0	0.151488	0	0.0829564	0.975667	0.922044	38.5215	37.3133	0	0	2.12603	2.94698	14.2878	18.2057
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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