|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005041 ID=TCONS_00005041|Name=TCONS_00005041|organism=Clytia hemisphaerica|type=transcript|length=2091bpRun BLAST on NCBI protein sequence of TCONS_00005041-protein >TCONS_00005041-protein ID=TCONS_00005041-protein|Name=TCONS_00005041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp IYLIFRKKKVKRNIKMEAISSIIWNDDFWLPEGFTWKDLEMTPGGIRHPQRun BLAST on NCBI transcript from alignment at sc0000050:352367..365162- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005041 ID=TCONS_00005041|Name=TCONS_00005041|organism=Clytia hemisphaerica|type=transcript|length=12796bp|location=Sequence derived from alignment at sc0000050:352367..365162- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000050:352367..365162- >TCONS_00005041 ID=TCONS_00005041|Name=TCONS_00005041|organism=Clytia hemisphaerica|type=CDS|length=10314bp|location=Sequence derived from alignment at sc0000050:352367..365162- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005041 vs. Swiss-Prot (Human)
Match: CERS5 (Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 4.547e-75 Identity = 154/364 (42.31%), Postives = 219/364 (60.16%), Query Frame = 2
Query: 68 IWNDDFWLPEGFTWKDLEMTPGGIRHPQFSDXXXXXXXXXXXXXXXXXXXXXXALPFCVYLGITNTTSKYEQ-NAICEKVFKEVTANPKKEHIDGLIKQLGWSQGRVQRWFRKRRKANQLPLLKKATESCWRCVFYFWLFCFGGYTILPTDWFYDTRQWMIGYIREQDFNNYMRSYYLMELGFYFSLLFSQFIDAKRKDFWQMFIHHIVTIALIFSSFAISHCRIGVVIMFIHDASDFWLEGAKVFNYAKIQKVCDGLFVMFALTFFITRWVYYPFWVLEAFIFKVPELIGPWKGHWLECTWLIILQILHFYWGGLIVHMVYKLLTQGKVDRDTR--------SEDESSGDETPTQPTTSAAVN 1132
+W++ FWLPE +W DLE G +P+ + V +A + +R++FERFIA P + +GI ++ Q NAI EKVF +T P K+ ++GL KQL W+ ++Q WFR RR ++ P L K ES WR FY +FC+G + + WF+D RQ Y Q ++ + YY+MEL FY+SL+FSQF D KRKDF MF+HH+VTI LI S+ + R+G +IM +HD SDF LE AK+ NYAK Q++CD LFV+F+ F +TR YPFW+L +F+ E+IGP+ WL L+ LQ+LH W LI + K L +GKV +D R ED ++ ++P ++S N
Sbjct: 16 LWSERFWLPENVSWADLEGPADGYGYPRGRHILSVFPLAAGIFFVRLLFERFIAKPCALCIGIEDSGPYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRRNQDKPPTLTKFCESMWRFTFYLCIFCYGIRFLWSSPWFWDIRQCWHNY-PFQPLSSGLYHYYIMELAFYWSLMFSQFTDIKRKDFLIMFVHHLVTIGLISFSYINNMVRVGTLIMCLHDVSDFLLEAAKLANYAKYQRLCDTLFVIFSAVFMVTRLGIYPFWILNTTLFESWEIIGPYASWWLLNGLLLTLQLLHVIWSYLIARIALKALIRGKVSKDDRSDVESSSEEEDVTTCTKSPCDSSSSNGAN 378 The following BLAST results are available for this feature:
BLAST of TCONS_00005041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.