TCONS_00005041-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005041-protein
Unique NameTCONS_00005041-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005041-protein ID=TCONS_00005041-protein|Name=TCONS_00005041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
IYLIFRKKKVKRNIKMEAISSIIWNDDFWLPEGFTWKDLEMTPGGIRHPQ
FSDLYYVPIIALVLLLIRIIFERFIALPFCVYLGITNTTSKYEQNAICEK
VFKEVTANPKKEHIDGLIKQLGWSQGRVQRWFRKRRKANQLPLLKKATES
CWRCVFYFWLFCFGGYTILPTDWFYDTRQWMIGYIREQDFNNYMRSYYLM
ELGFYFSLLFSQFIDAKRKDFWQMFIHHIVTIALIFSSFAISHCRIGVVI
MFIHDASDFWLEGAKVFNYAKIQKVCDGLFVMFALTFFITRWVYYPFWVL
EAFIFKVPELIGPWKGHWLECTWLIILQILHFYWGGLIVHMVYKLLTQGK
VDRDTRSEDESSGDETPTQPTTSAAVNKKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002855XLOC_002855Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005041TCONS_00005041Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
IPR001356Homeobox_dom
IPR016439Lag1/Lac1
IPR009057Homeobox-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 145..347
e-value: 3.2E-49
score: 179.5
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 146..339
e-value: 4.4E-37
score: 127.6
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 145..347
score: 12.091
NoneNo IPR availableGENE3D1.10.10.60coord: 89..140
e-value: 9.3E-7
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..381
NoneNo IPR availableCDDcd00086homeodomaincoord: 88..137
e-value: 1.0459E-5
score: 41.4601
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 88..136
e-value: 1.3E-4
score: 21.6
IPR016439Ceramide synthase component Lag1/Lac1PIRSFPIRSF005225LAG1_LAC1coord: 14..381
e-value: 1.1E-81
score: 273.1
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 88..137

Blast
[Close]
BLAST of TCONS_00005041-protein vs. Swiss-Prot (Human)
Match: CERS5 (Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.068e-89
Identity = 154/365 (42.19%), Postives = 220/365 (60.27%), Query Frame = 0 
Query:   23 IWNDDFWLPEGFTWKDLEMTPGGIRHPQFSDLYYVPIIALVLLLIRIIFERFIALPFCVYLGITNTTSKYEQ-NAICEKVFKEVTANPKKEHIDGLIKQLGWSQGRVQRWFRKRRKANQLPLLKKATESCWRCVFYFWLFCFGGYTILPTDWFYDTRQWMIGYIREQDFNNYMRSYYLMELGFYFSLLFSQFIDAKRKDFWQMFIHHIVTIALIFSSFAISHCRIGVVIMFIHDASDFWLEGAKVFNYAKIQKVCDGLFVMFALTFFITRWVYYPFWVLEAFIFKVPELIGPWKGHWLECTWLIILQILHFYWGGLIVHMVYKLLTQGKVDRDTR--------SEDESSGDETPTQPTTSAAVNK 378
            +W++ FWLPE  +W DLE    G  +P+   +  V  +A  +  +R++FERFIA P  + +GI ++     Q NAI EKVF  +T  P K+ ++GL KQL W+  ++Q WFR RR  ++ P L K  ES WR  FY  +FC+G   +  + WF+D RQ    Y   Q  ++ +  YY+MEL FY+SL+FSQF D KRKDF  MF+HH+VTI LI  S+  +  R+G +IM +HD SDF LE AK+ NYAK Q++CD LFV+F+  F +TR   YPFW+L   +F+  E+IGP+   WL    L+ LQ+LH  W  LI  +  K L +GKV +D R         ED ++  ++P   ++S   N+
Sbjct:   16 LWSERFWLPENVSWADLEGPADGYGYPRGRHILSVFPLAAGIFFVRLLFERFIAKPCALCIGIEDSGPYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRRNQDKPPTLTKFCESMWRFTFYLCIFCYGIRFLWSSPWFWDIRQCWHNY-PFQPLSSGLYHYYIMELAFYWSLMFSQFTDIKRKDFLIMFVHHLVTIGLISFSYINNMVRVGTLIMCLHDVSDFLLEAAKLANYAKYQRLCDTLFVIFSAVFMVTRLGIYPFWILNTTLFESWEIIGPYASWWLLNGLLLTLQLLHVIWSYLIARIALKALIRGKVSKDDRSDVESSSEEEDVTTCTKSPCDSSSSNGANR 379
The following BLAST results are available for this feature:
BLAST of TCONS_00005041-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CERS54.068e-8942.19Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 ... [more]
back to top