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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005033 ID=TCONS_00005033|Name=TCONS_00005033|organism=Clytia hemisphaerica|type=transcript|length=2739bp aaaagatttagaaaaggATGGATGAAATATACGCAGCGATTAAGAAGAAG GATTTGACCTCCTTGTCCAACCTGATTACCAGCAAGAACATCAACACATC TGACAAATCGAAACAAACACCTCTGACGTTAGCTTGCGAACAAGGTCATT TAGATGTCGTCAAGTTTCTCGTTGAAGATAAGAAAGCAAACGTAGATCGA AAAGATGGTAAATCAAATACACCTTTGTATGTAGCTTGTCTTGCCGATCA CCGACCCATCATCACTTACTTGCTAGAGAAGAATGCGGATATCAATAAAC CGGCAAGGAATAACTTCACTCCTGTTTATGCTGCAGTTGAGAAAGATAAT CTAGAGTTGCTTGAATATCTTGTGTCAGTCAAAGCTGATTTAAATGCCAA ATGTTCCAGAGGTGGATTAATCAGACACGCCTGCTGCAAATGTGATGCAC CAAAATGTTTCGATTACTTGTTAAAGAAGAAGCTTGATCTGAACACTTAC CATGAACAATTGGAACAGTATCTTAGCTTTGAGCTGTCTTTCCAATACCT TGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCACCATGGAGTACCTCA AAAAGCTACTCAAGGCGGGTGCAGATACATCACTCTTAAGTAAAACCAAA GGTCGCGAAGAAACACCCCTTCATGTCGCTGCTAAATGTGTCGACAATGA ATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGTGAACCAAAAATCTG CAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCTTGGAGCGTAGTAAG GACCCGAAAGCAGAAAGTGCACGCAAAGTGATGCCCATAGAATGTGTACA GACACTTTTCAAATACAAAGCTGACCCGAACATCCCGAATGCTGCCGGTG TTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCTACGGCTTGAAGGAG GATGCCCAattcctaaaaatgttcttggaAAATGGAGCGGACGTTAATGT CAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGCAGCTGGTAAACAGG GCACGAAAGTCATTGATTGCATCAAGATGTTAGTTAGTCATGGGGCGGAT ATCAATACGCCTGATGGGAATGGTGAAAATGTCATCCACTTGGTTGCTAG AAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGAACTGCCTTGGGATG TTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACAAAGAAGGCGATTAT CCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAAGTCTTTAAATCTAT GCTTAAAAATGGTATTGACATCAATGTGCGAAACAAGAAAGGTGAAACAT TTCTTCACATGTTGCTTCGACGATATATTGAAAACGGGGCAAGGTGGGGA CAGGATCCAGTCGAAGAAACGATTCAACGCATGGCCAATTGCGACGAACC TGccgattttccaaaatttgaccTTTACCTCAAAGATAAGAAAGGTCAAG ATTtttatgatattcttatgaaagGTGGTTACGGGTACAATTGGAAAAAG cagtttgatttgttgaaacaGAATGGCTATGATACACCAACATTAGACAG gTGGAACCGTCGTATGCGAGAAGGCGATAACCCGGAAAATATGGATGTAA GTGGTGGTAGAGCTGCTGGCGGATTTGATTCGGTAAGACAGCTAGCATCT AGAGGTGCGCCTGCCCGAGGTGTTCCTTCGAGAGGTGCAGGCAACAGAGC TATGAAATTCGATATGGGATCCCAATCCAAACGTACAACAGGTTCAAGAC CAATTGCTGAACGATCGCCACTGACTCCTACAAAATCACCGAAATCATCT CCTTCAAACGAAGTCAATAATGAGAAAAAGACAGCCGGACCGCCTTTAAA AGCGACGCCGGAGACGGAACCGAAACCAGAACCAGAGCCAGAACCGGAGC CAGAACCGGAGCCGGAACCAAAACAGGCGGAAGAGGCGGAAGAGGACGAA GACGCCCCAAAGGATGTGATGATTTCTTACAACTGGGGTCACCAAGCAAC GGCATTCAAGATACGTGATTACTTGCGCGATAACAGCAAACTGTCCGTAT GGATTGACACGGAGAAAATGTCAGGTGACATTTACGGGAAAATGGCGCAA GCGGTTTACAAGTCCAAGGTTATTGTTATGTGTTTGAGTGAAAAGTATGA GATGTCGGATAATTGTAAGTTTGAGTACGAATATGCTgccaagaagaaga agaattttgTGCCAGTAATGGTTCAACCAGATTATGAGCCGAGAGGAGGG TTCAGTTTGGATATGATTTTGGGAAGCAAGTTGTATTATGAGCTATTCGA GGAGAAAGACTTTAAGGAAAACATTCCGAATGTTTTGAAAGCTATTCAAG GAGTTTTGGAAAAGATGTAAGTTCTAACGCTTCAGAATTTAGAAGACGAT GGAGTTTTTTTGCTAATTATTACCTAGTTTACATATTGATTGTACATACC GTGTGTTGTGTGTTATTTAGTATTAAGATTTTGTAGTCATGTTTTtatta atgtttatttttaggGTTTCTTTAATAGATTTGTTAacataaattttctt tctttagtaCTCTATATGTAGGAGATGtgagggagtttctaaacatcgac cagaaatggcgaccacgacaggcgaccagataaatttgggttatcgagtt tacctgctctctccaccgtagagaacatccaaatcgagt Run BLAST on NCBI transcript from alignment at sc0000050:63492..68693- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005033 ID=TCONS_00005033|Name=TCONS_00005033|organism=Clytia hemisphaerica|type=transcript|length=5202bp|location=Sequence derived from alignment at sc0000050:63492..68693- (Clytia hemisphaerica) AAAAGATTTAGAAAAGGATGGATGAAATATACGCAGCGATTAAGAAGAAG
GATTTGACCTCCTTGTCCAACCTGATTACCAGCAAGAACATCAACACATC
TGACAAATCGAAACAAACACCTCTGACGTTAGCTTGCGAACAAGGTCATT
TAGATGTCGTCAAGTTTCTCGTTGAAGATAAGAAAGCAAACGTAGATCGA
AAAGATGGTAAATCAAATACACCTTTGTATGTAGCTTGTCTTGCCGATCA
CCGACCCATCATCACTTACTTGCTAGAGAAGAATGCGGATATCAATAAAC
CGGCAAGGAATAACTTCACTCCTGTTTATGCTGCAGTTGAGAAAGATAAT
CTAGAGTTGCTTGAATATCTTGTGTCAGTCAAAGCTGATTTAAATGCCAA
ATGTTCCAGAGGTGGATTAATCAGACACGCCTGCTGCAAATGTGATGCAC
CAAAATGTTTCGATTACTTGTTAAAGAAGAAGCTTGATCTGAACACTTAC
CATGAACAATTGGAACAGTATCTTAGCTTTGAGCTGTCTTTCCAATACCT
TGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCACCATGGAGTACCTCA
AAAAGCTACTCAAGGCGGGTGCAGATACATCACTCTTAAGTAAAACCAAA
GGTCGCGAAGAAACACCCCTTCATGTCGCTGCTAAATGTGTCGACAATGA
ATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGTGAACCAAAAATCTG
CAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCTTGGAGCGTAGTAAG
GACCCGAAAGCAGAAAGTGCACGCAAAGTGATGCCCATAGAATGTGTACA
GACACTTTTCAAATACAAAGCTGACCCGAACATCCCGAATGCTGCCGGTG
TTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCTACGGCTTGAAGGAG
GATGCCCAATTCCTAAAAATGTTCTTGGAAAATGGAGCGGACGTTAATGT
CAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGCAGCTGGTAAACAGG
GCACGAAAGTCATTGATTGCATCAAGATGTTAGTTAGTCATGGGGCGGAT
ATCAATACGCCTGATGGGAATGGTGAAAATGTCATCCACTTGGTTGCTAG
AAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGAACTGCCTTGGGATG
TTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACAAAGAAGGCGATTAT
CCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAAGTCTTTAAATCTAT
GCTTAAAAATGGTATTGACATCAATGTGCGAAACAAGAAAGGTGAAACAT
TTCTTCACATGTTGCTTCGACGATATATTGAAAACGGGGCAAGGTGGGGA
CAGGATCCAGTCGAAGAAACGATTCAACGCATGGCCAATTGCGACGAACC
TGCCGATTTTCCAAAATTTGACCTTTACCTCAAAGATAAGAAAGGTCAAG
ATTTTTATGATATTCTTATGAAAGGTGGTTACGGGTACAATTGGAAAAAG
CAGTTTGATTTGTTGAAACAGAATGGCTATGATACACCAACATTAGACAG
GTATGCAATTTTTATTTTCCTAAAGTGGACGTAAAGTTTTCCAAAAAAGA
TAGAGGTTTAGAAATCATGACAACTTTTTGGAATATTTGATAATGGGGCC
TCTGTGGTTCATTTCTGCTAATTTGAGTTGTTTTTGGCAGTTCTAGCCCT
ACTTCGATGGCTCTAACTTTTTCTCCAGCAAAAAAAATCTTCATCCTCTA
CCTACTTGTTTTTAAATGCATACTTTTGAGACTACCTTAAATAAATAATA
ATTGATATCTTTCGTTGCGTTCCAAAATCTTCCTGGTGAACTTTGATTTC
AGGGAATATTATGTAAGTAACTCCCTATGTCGAATATTTAACCTTGACTT
ATAGATATTTGCTTTGTGCCCAATTTTATATTGTTTCTTTTATTTCAAAG
GTGGAACCGTCGTATGCGAGAAGGCGATAACCCGGAAAATATGGATGTAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGATCTGAAC
ACTTACCATGGACAATTGGAACAGTATCTTAGCTTTGAGCTGTCTTTCCA
ATACCTTGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCACCATGGAGT
ATCTCAAAAAGCTACTCAAGGCGGGTGCAGATACATCACTCTTAAGTAAA
ACCAAAGGTCGCGAAGAAACACCCCTTCATATCGCTGCTAAATGTGTCGA
CAATGAATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGTGAACCAAA
AATCTGCAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCTTGGAGCGT
AGTAAGGACCCGAAAGCAGAAAATGCACGCAAAGTGATGCCCATAGAGTG
TGTACAGACACTTTTCAAATACAAAGCTGACCCGAACATCCCGAATGCTG
CCGGTGTTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCTACGGCTTG
AAGGAGGATGCCCAATTCCTAAAAATGTTCTTGGAAAATGGAGCGGACGT
TAATGTCAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGCAGCTGGTA
AACAGGGCACGAAAGTCATTGATTGCATCAAGATGTTAGTTAGTCATGGG
GCGGATATCAATACGCCTGATGGGAATGGTGAAAATGTCATCCACTTGGT
TGCTAGAAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGAACTGCCTT
GGGATGTTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACAAAGAAGGC
GATTATCCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAAGTCTTTAA
ATCTATGCTTAAAAATGGTATTGACATCAATGTGCGAAACAAGAAAGGTG
AAACATTTCTTCACATGTTGCTTCGACGATATATTGAAAACGGGGCAAGG
TGGGGACAGGATCCAGTCGAAGAAACGATTCAACGCATGGCCAATTGCGA
CGATCCTGCCGATTTTCCAAAATTTGACCTTTACCTCAAAGATAAGAAAG
GTCAAGATTTTTATGATATTCTTATGAAAGGTGGTTACGGGTACAATTGG
AGAAAGCAGTTTGATTTGTTGAAACAGAATGGCTATGATACACCAACATT
AGACAGGTATGCAATTTTTATTTTCCTAAACTGGACGGATTTAGAAATCA
TGACAACTTTTTGGAATATTTGATAATGGTGCCTCTGTGGCTCATTTCTG
CTAATTTGAGTTGTTTTTGGCAGTTCTAGCCCTACTTCGATGGCTCTAAC
TTTTTCTCCAGCAAAAAAATTCTTCATCCTCTACTACTTGTTTTTAAATG
CATACTTTTGAGACTACCTTAAATAAATAATAATTGATATCTTTTGTTGC
GCTCCAAAATCTTCCTGATGAACTTTGAAGTAACTCCCTATGTCGAATAT
TTAACCTTGACTTTTAGATATTTGCTTTGTGCCCAATTTTATATTGTTTC
TTTTATTTCAAAGGTGGAACCGTCGTATGCGAGAAGGCGATAACCCGGAA
AATATGGATGTAAGTGGTGGTAGAGCTGCTGGCGGATTTGATTCGGTAAG
ACAGCTAGCATCTAGAGGTGCGCCTGCCCGAGGTGTTCCTTCGAGAGGTG
CAGGCAACAGAGCTATGAAATTCGATATGGGATCCCAATCCAAACGTACA
ACAGGTTCAAGACCAATTGCTGAACGATCGCCACTGACTCCTACAAAATC
ACCGAAATCATCTCCTTCAAACGAAGTCAATAATGAGAAAAAGACAGCCG
GACCGCCTTTAAAAGCGACGCCGGAGACGGAACCGAAACCAGAACCAGAG
CCAGAACCGGAGCCAGAACCGGAGCCGGAACCAAAACAGGCGGAAGAGGC
GGAAGAGGACGAAGACGCCCCAAAGGATGTGATGATTTCTTACAACTGGG
GTCACCAAGCAACGGCATTCAAGATACGTGATTACTTGCGCGATAACAGC
AAACTGTCCGTATGGATTGACACGGAGAAAATGTCAGGTGACATTTACGG
GAAAATGGCGCAAGCGGTTTACAAGTCCAAGGTTATTGTTATGTGTTTGA
GTGAAAAGTATGAGATGTCGGATAATTGTAAGTTTGAGTACGAATATGCT
GCCAAGAAGAAGAAGAATTTTGTGCCAGTAATGGTTCAACCAGATTATGA
GCCGAGAGGAGGGTTCAGTTTGGATATGATTTTGGGAAGCAAGTTGTATT
ATGAGCTATTCGAGGAGAAAGACTTTAAGGAAAACATTCCGAATGTTTTG
AAAGCTATTCAAGGAGTTTTGGAAAAGATGTAAGTTCTAACGCTTCAGAA
TTTAGAAGACGATGGAGTTTTTTTGCTAATTATTACCTAGTTTACATATT
GATTGTACATACCGTGTGTTGTGTGTTATTTAGTATTAAGATTTTGTAGT
CATGTTTTTATTAATGTTTATTTTTAGGGTTTCTTTAATAGATTTGTTAA
CATAAATTTTCTTTCTTTAGTACTCTATATGTAGGAGATGTGAGGGAGTT
TCTAAACATCGACCAGAAATGGCGACCACGACAGGCGACCAGATAAATTT
GGGTTATCGAGTTTACCTGCTCTCTCCACCGTAGAGAACATCCAAATCGA
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005033-exon-sc0000050-1575043694:67094..68693 | TCONS_00005033-exon-sc0000050-1575043694:67094..68693 | Clytia hemisphaerica | exon |
TCONS_00005033-exon-sc0000050-1575043694:63492..64630 | TCONS_00005033-exon-sc0000050-1575043694:63492..64630 | Clytia hemisphaerica | exon |
TCONS_00005033-exon-sc0000050-1510915933:67094..68693 | TCONS_00005033-exon-sc0000050-1510915933:67094..68693 | Clytia hemisphaerica | exon |
TCONS_00005033-exon-sc0000050-1510915933:63492..64630 | TCONS_00005033-exon-sc0000050-1510915933:63492..64630 | Clytia hemisphaerica | exon |
TCONS_00005033-exon-sc0000050-1491911889:67094..68693 | TCONS_00005033-exon-sc0000050-1491911889:67094..68693 | Clytia hemisphaerica | exon |
TCONS_00005033-exon-sc0000050-1491911889:63492..64630 | TCONS_00005033-exon-sc0000050-1491911889:63492..64630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000050 | supercontig | sc0000050:63492..68693 - |
Blast
BLAST of TCONS_00005033 vs. Swiss-Prot (Human)
Match: ANK3 (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 4.738e-27 Identity = 120/523 (22.94%), Postives = 221/523 (42.26%), Query Frame = 3
Query: 87 NINTSDKSKQTPLTLACEQGHLDVVKFLVEDKKANVDRKDGKSNTPLYVACLADHRPIITYLLEKNADINKPARNNFTPVYAAVEKDNLELLEYLVSVKADLNAKCSRGGLIRHACCKCDAPKCFDYLLKKKLDLNTYHEQLEQYL-------SFELSFQYLARRKDEARAK------------------TTMEYLKKLLKAGADTSLLSK------TKGREETPLHVAAKCVDNELMSVLLEHGANVNQKSANGATPL----------LSLFFLERSKDPKAESARKVMPIE---------CVQTLFKY---------------------------------KADPNIPNAAGVTPFLYFMSSFFYGLKEDAQFLKMFLENGADVNVSDFAGEKPIHFAA--GKQGTKVIDCIKMLVSHGADINTPDGNGENVIHLVARRQESSRMSFFEELPWDVLIENGAKIKANKEGDY-PHFVAFMSNRFEVFKSMLKNGIDINVRNKKGETFLHMLLRRYIENGARW 1397
+IN +++ L LA ++GH++VV L++ ++ANVD K NT L++A LA ++ L+ A++N ++N FTP+Y A ++++LE++++L+ A + G F L + L H+Q+ L L ++A RKD+ +A T + T LL++ T + TPLHVA+K + ++ +LL+ GA ++ K+ +G TPL + L+R+ +++ + P+ CVQ L ++ KA+PN G TP K + +++ L++GA + +G PIH AA G ++ + L+ HGA NT + GE +H+ AR ++ + + L+++GA+++A + D P ++ + ++ + +L+ G N G T LH+ R E+ A +
Sbjct: 66 DINICNQNGLNALHLASKEGHVEVVSELLQ-REANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDG---------------FTPL---AVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPL------HIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGH-----VNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRY--------LVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAF 550
The following BLAST results are available for this feature:
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