TCONS_00005022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005022
Unique NameTCONS_00005022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005022 ID=TCONS_00005022|Name=TCONS_00005022|organism=Clytia hemisphaerica|type=transcript|length=2050bp
ACCTGGTGTGTAGCTGAGAATAGTGGAACTTTAAAGATTTGAGAAGATTG
TTCCTAccctttttgttttgttttcttataCTGTCATGCTTTTATACCGA
GTAGAAAATTGCTAAGTGCGATGGTGCGATTACCTAATAATTGACCATGC
TGATGTTGTAAAGTACGGTATCCAAATTCCTAATCGTGTTTTTGTCGGTG
GAGTTGCCTTTGACACAAAGGAGGATGAACTGAAGGGCTTTTTTCAACAA
TATGGAAAAATCAAGGAATGTAAAATTATCAAAGACAATCAAAGCATCAG
TCGAGGATTCGCATTTGTTACGTTTGAGAGCAAACATGACGCAATTCAAG
CTCAACAAaagggCACAGTATTTTTCAATCAGAAAAAGTTGAACTTGGGT
CCTGCTATCAGGCAAAAGATCCTGTGCTCTCAACTGGAGTTTATATCCAT
CCCAGCGGATATTCTTATACAGTTGCTCCAAATGGTGTGTGGTATTTTCA
CAAACCAGATGGCTCGCCACCTTCGACAGCCCCTGGCGCACCACCTATGG
CTTATACACCAACAACAATGCAAAAAATAGCCTCGCAAAGTTCTCCCACC
TCTACCAAAGCATCTAGCAGTGAGAAGATGCAAGAAAGTGGTGTAGATGA
AAACAGAGCAAATACTACTGTTACTCATTCCAATATGCCAATTTATCAAA
ACCCTGGAGTCATCCAAGAACCAGTGCAAATACCTCAGACTACAATTCAA
CCAGATATCCACTACCAGCCAACAAGCTATGTTCAACATACTCATTCAAC
TTTTGGAGGATCAAATATCCATGTTGCTTTTCAAAACATGTCCATAACTA
CTCATCCACAAACAACGCCCATTCCAGTTGGCCCAGCCGCTCAGATGACT
GTTCCACTCACTATTCCTCCCTCCTCGGAGCATATACCTGCTGATATGAA
TGGTGGTCATAATCCTGGTTTTAATTATGTTAACGAATCATGCATGCCAT
ATTACCCAAATGGAAAATATTGTAGTCAGGGTTCTCAGACAGGTGCTATT
CCAGCCGATCCATCCAGACCAGTTCCATACCCTATGATACCCAGAACAGA
CTACATCCCTGTTGTTAATTCTTCAATGTACACCATTTATGGAGATGCTT
TTTCCCAGCAGCAACAGCCAGCTTACTTCTTACCAAACAGCTATGTGGAT
CAACCATACTGTTCCTCCCAAGTTCCAATGGTAAACTGCTCTAAGAGAGG
GTATTATCCACCACAAATCCCTAATGGAAAACCACCTGTAAAGAAAGAGA
CATCAAATGttatgaaaaataattataaCCAAATGCACCTTCAATCGCAA
GTCGTTTAGAAAGAATTATCATCCATTTACTTGTTTGGAATGAAAAAccg
aaaaatttttaaatgtttttgatcatttttttaaCCGAATATTAGAATTG
TATTTTGTAAATACATTTAgtctatgttttgttataaaacTTCAATCCAT
TTTTTCAGATATAACAAATGCTTATTATCAGTTTTGTTTGATATAATGCA
GAtgttatttttaattgtttctagATTTATGTTGTATTGTCCTTAATTAT
TTGATACAATGAATCTTGTGCGTGAGAATATTTTCTGTGTttgtgtttat
ttcatttttatttaatatgttggttaaattatttaaaattttatgtacaa
AGGGGCTTCAATCTCTACAAAATTAGTTTTTCTTGTCATCTTGTGGTGGA
AGACTCCAGATAAtaagatttttaaaactttattttatcTACCTCACTAT
GCTTAGCTTGTTTAAAagctaaaatttttattttatcaaaaataaaagct
aaaatttttattttatcaaaaaataaatcaaatataaTTCAGAAATTTTT
ATTGTGCGAATATCACGGTCGTATTATGTTTTGACCTAATAAAtgttttt
gtcaatatttggaatgtaatttttcaaatttatgttGTATCGTTATATTT
GGGGCCAATCTCCAAAATACTCTTTAAAATAGCTAAAATCCTTACAAATC
Run BLAST on NCBI

transcript from alignment at sc0000050:21887..27707-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005022 ID=TCONS_00005022|Name=TCONS_00005022|organism=Clytia hemisphaerica|type=transcript|length=5821bp|location=Sequence derived from alignment at sc0000050:21887..27707- (Clytia hemisphaerica)
ACCTGGTGTGTAGCTGAGAATAGTGGAACTTTAAAGATTTGAGAAGATTG
TTCCTACCCTTTTTGTTTTGTTTTCTTATACTGTCATGCTTTTATACCGA
GTAGAAAATTGCTAAGTGCGATGGTGCGATTACCTAATAATTGACCATGT
AAGTGGGCCCTAAATAAGAAATAGAACGTTTTGGAACAAATAGAATGTTT
TTGCTTCTTTTTTTTCTTCCTTGTTGTGTCACGTGATCGAAAAATTCTTT
TGTACAGCGCGCGAACATCTATACCCGGGGGTAATGACAAATTTAAAACA
CGGTTTTATTCACGATTTAGGCTATTTAAAAAGTCTCTGAAATTTTTATT
ACTTATTGAGTCTCCTGATGTTTCACTTTAGAAATTAGTATTTTGATAAC
TCTCGATAACTTTTACTATCAAAGGAATAAATTACTTTACAACCCCCGTC
TCGATTTGCAATGATTATAGGTATATTCCCAAGCTACTCAAAAGTGTCAA
TGACATTTGTGTTCATTCAGAAAGCGCGACAAAGAAAACAAAACCACAAA
CAAGCCTTTTGAGGATAACTGCCCCAATTTCTCATGCATGGATAGATTTT
ATAATTGAGGGATCTGCACTTGAATTTGACACATCAGAAGAAAACAGAGA
AACGAACGTTGTTGGTCATCAAAGATAGTAAAGGAGTGGCAAAATTTGTT
AGAAAATGGTTTGGAAAAACTTTTTCTTTTACTACTACTTTGCATTTTTT
ACTGTTCAACCAAGTTTTTTACGGGTTTGTCCTCAAATATGAGTATTTCT
CAAAGGTGATTGAGTGACTAGATAAGTTTAGCAAGTGACGTTTCTTCTGT
GTACTTCTCATTACATTATCAATTTAAAGTTTTTTGTTTTTTTTAGTAAA
TTCGTGTTTTAGCCTATTTACAATTTTCTTTCAGGCTGATGTTGTAAAGT
ACGGTATCCAAATTCCTAATCGTGTTTTTGTCGGTGGAGTTGCCTTTGAC
GTATGTATTGATTGTTATCTTTTTGTTATTATTTCCTCTGCTCTCTAGAA
TTCGAGCATTATTCTTCATGATTAGATCTTCAACGACCTAAAAAAAGGTC
CAATTGAATAGTAGAGCGTCGTTTAGGAGATTTTATTGTTGACACGAAGA
CTTTCAATATTATCGAATAATGGAGGGTATCGAATAGTAGAATGTCGAAT
AAGAGTGTCAACTGTAATATGTATCGATTTAAAAGCTCGAAAAGTTTTTT
CCGCAATCATAAGTGCATTTTACACCCGAAGTGCACTCCCAGAAGCAAAC
TTTTATTTTGTTCGTGGTTGCACCCTCCCTGTTTCTACATATACCCGTGG
CCTGTTTTATTCATTCACTCATTCATTCATTCGTGGTGCTCTTTTCTTCC
ATGTAGACAAAGGAGGATGAACTGAAGGGCTTTTTTCAACAATATGGAAA
AATCAAGGAATGTAAAATTATCAAAGACAATCAAAGCATCAGTCGAGGGT
AAGATTAAGAGCTGTTCGGTTTTTCTAGTCTTTACAACTCTGCCAAAGCT
CCCGCCATGATGTAGCCTAGGTTTTTAGTACAGGTGTTATCTTACTTAAA
ATATTTGTGCTTTTTAGACCTTTTCTTTTCAACTTCGAACTGGTAATCGC
AAGTAAACTTTCTTAGGGATTGAAATTCGTCTCATCTCAAATGTACTCGA
ACAAGTGAAGTTCGAGTAAAAAAATTACTCTAACTCTTCACAATTTTTCA
AAAGCATAAGTTCGAGCAAGTTTGATATGAAAATTGTAAACTATAAATTA
AGCAAATTTGATTTCTTTTTGCTCTTAAATAGAAGGAAACTTGTTCAAAT
TTTCCCAGTAAGGCTCGTAAAATCCATAGAATCTTATGTTCAACGGAACT
CATCAATCTCTAATCAAACTCCTCACAAATTTTTGAAAGTTTCCAAAAGT
TCATAGAGGAATTACTCGAACTTTACTTGTTCGAGTAATGGGGTCTAGAC
TTATAAAGGTACTTATTATTGTCAGATTTTTCAGTTTTTTCCGAACGAGA
TACAACGCAATTTAAAATTAATTTTTTAACTAGATTCGCATTTGTTACGT
TTGAGAGCAAACATGACGCAATTCAAGCTCAACAAAAGGTTTGAAATATT
TGAAATGTATTTTAGTCACTTTTCTACTAGAAGAAACATAGGACCAAATT
TTTGGAATTTTTTGTTTAAACATTGAGCCGAACGTGAACACCCGGGGGGG
GGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGGGGGGGGGGACAGTGGGTTTACCAACTGACG
GTATGAGCGGCGAAAAATTGGCTTTTAGAATCGCACCCTTGTAGTGCAGA
AAAGAATAGGTGAAATTCATCCCCATACAGTGCATTTTTCAAATTTTAAA
CTCTTTTAGAGCAAAAAAAATCAACTTTTTCGAGCAAAAATTTACAACTT
TTTCCAGACTTGCTGAAATTTCCACCCTTACAGTGCATTTATCAAAAGTC
CACCCTTACAGTGCATTTCTGATATTTTGAAAAGCATACCCTTAAACGCC
GCATATACCCGTCGGTCAATTTGCCTGACTGCCCCCCCCCCCTCTCCGGG
CGTGAACAATACGGACCATTGTAACCTTGCCAACAAATACGGCACTTTTA
GCAGGCTAGATTTTTAGTGTTTGATTCACATTTACCGGACCTGCCGGAAC
ATATGCCGGGAAATGCGGTAATCAATACGGGCATTATATTTGAGACATCA
CCGATGGGATTCCCCTACAACTTTCACTTTCGTTTTCAGGGCACAGTATT
TTTCAATCAGAAAAAGTTGAACTTGGGTCCTGCTATCAGGCAAAAGGTTT
GTCAGTTTACTCTTTTCTTTAAATATTATTCAATTTCATTTGAAACTGCT
TTTCTATCTAATGATCTTGAGGGCATAGTCCAATCTTTAATGTTGAAGGG
TTTGTTAGAGTATATCCTTTTCTGTTTTCAAAGCAAGGGGCCCTAATATT
AGGTATTTGCACTGAAAGATTTACTTTAACGGCTAAGTTGTATTTGATTT
GTTCCTACTTCCAACATTTTTTACTCTTATTTATCTCCATCCAGGGGGAA
ACTAGGGCTGCCAGTTAACAATAGGCAACCCAACTTTGAACCCACTCTTA
CCCATATCAGGATTAGAGAAAATACCACTTTGTGAATATTAATACCATTG
CTTGTACTAATTTGACCACATTTCTATCTCTCAACAGGCAAAAAGTTGAA
ACTTACTATTTTTCTGTCCCTTATTGAGACTGGGATTTAATTTTCTCACT
CTTCTAACCCTTACAGAGACACCCAGGTTCCACTTCATTTGCCTAGCTAT
CCCCTGGGTCTGGGTAGAACAATAGTAAAGGGTCTTTAAATGTAATTATT
GAAATTTAGGGAGTCGTGTTCAATGGAACCAAGGAAGCAGGAAATGGTAT
GAAGATGATTTCAATTTTCACAAATTATGATTGTCAAAACTCGAATCTGT
CTAATGTTTGCTTTAGAGAGAGAACTTGATCAAGGTTATTATTGGATCAG
CAGAACAAATAATTGCCTCTCCTAACACATATATATACATGAAGCAATTT
TTTGTTACCTTTTTCTATATTTCTATGTGATTTTAATTAATTCAAATGAG
TCTACTCATTGTTCATTTTAGATCCTGTGCTCTCAACTGGAGTTTATATC
CATCCCAGCGGATATTCTTATACAGTTGCTCCAAATGGTGTGTGGTATTT
TCACAAACCAGATGGCTCGCCACCTTCGACAGCCCCTGGCGCACCACCTA
TGGCTTATACACCAACAACAATGCAAAAAATAGCCTCGCAAAGTTCTCCC
ACCTCTACCAAAGCATCTAGCAGTGAGAAGATGCAAGAAAGTGGTGTAGA
TGAAAACAGAGCAAATACTACTGTTACTCATTCCAATATGCCAATTTATC
AAAACCCTGGAGTCATCCAAGAACCAGTGCAAATACCTCAGACTACAATT
CAACCAGATATCCACTACCAGGTTAATGATTTTCTAATCATCTTTGATTT
CTTTGAAAAGATTGGCTCATGTCATCAGAAAGCTTTATTGTGTATTGTTG
CCTATTTTTCTGGCAATTTTAATTTTTTTTTTTCAGCAAAGCTAAATATG
AAATAACTATCCTATATTTACAGCCAACAAGCTATGTTCAACATACTCAT
TCAACTTTTGGAGGATCAAATATCCATGTTGCTTTTCAAAACATGTCCAT
AACTACTCATCCACAAACAACGCCCATTCCAGTTGGCCCAGCCGCTCAGA
TGACTGTTCCACTCACTATTCCTCCCTCCTCGGAGCATATACCTGCTGAT
ATGAATGGTGGTCATAATCCTGGTTTTAATTATGTTAACGAATCATGCAT
GCCATATTACCCAAATGGAAAATATTGTAGTCAGGGTTCTCAGACAGGTG
CTATTCCAGCCGATGTAAGTTTTCTTTCAATAAATTCTTCATTTGCTTAG
GTTAACCAAACATAAGGATAAGACATTTTTGTGGATTTTTCAAGAGATCT
CTATTTCTATAAATTGATCCAAAGGGTACTTACATTTTCCCGCATATAAA
CTAACAATACCACAGTTTGAACTGATTAAGATATCTCACTTTTTGAATAA
CTTAACTTAACAAGGCATAACATAATTCATAATTCAAATTTGGTTTGCTC
CATAAGTATTTAATTTATTCTTTTTCCCAGCCATCCAGACCAGTTCCATA
CCCTATGATACCCAGAACAGACTACATCCCTGTTGTTAATTCTTCAATGT
ACACCATTTATGGAGATGCTTTTTCCCAGCAGCAACAGCCAGCTTACTTC
TTACCAAACAGCTATGTGGATCAACCATACTGTTCCTCCCAAGTTCCAAT
GGTAAACTGCTCTAAGAGAGGGTATTATCCACCACAAATCCCTAATGGAA
AACCACCTGTAAAGAAAGAGACATCAAATGTTATGAAAAATAATTATAAC
CAAATGCACCTTCAATCGCAAGTCGTTTAGAAAGAATTATCATCCATTTA
CTTGTTTGGAATGAAAAACCGAAAAATTTTTAAATGTTTTTGATCATTTT
TTTAACCGAATATTAGAATTGTATTTTGTAAATACATTTAGTCTATGTTT
TGTTATAAAACTTCAATCCATTTTTTCAGATATAACAAATGCTTATTATC
AGTTTTGTTTGATATAATGCAGATGTTATTTTTAATTGTTTCTAGATTTA
TGTTGTATTGTCCTTAATTATTTGATACAATGAATCTTGTGCGTGAGAAT
ATTTTCTGTGTTTGTGTTTATTTCATTTTTATTTAATATGTTGGTTAAAT
TATTTAAAATTTTATGTACAAAGGGGCTTCAATCTCTACAAAATTAGTTT
TTCTTGTCATCTTGTGGTGGAAGACTCCAGATAATAAGATTTTTAAAACT
TTATTTTATCTACCTCACTATGCTTAGCTTGTTTAAAAGCTAAAATTTTT
ATTTTATCAAAAATAAAAGCTAAAATTTTTATTTTATCAAAAAATAAATC
AAATATAATTCAGAAATTTTTATTGTGCGAATATCACGGTCGTATTATGT
TTTGACCTAATAAATGTTTTTGTCAATATTTGGAATGTAATTTTTCAAAT
TTATGTTGTATCGTTATATTTGGGGCCAATCTCCAAAATACTCTTTAAAA
TAGCTAAAATCCTTACAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002847XLOC_002847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005022-exon-sc0000050-1575043694:27560..27707TCONS_00005022-exon-sc0000050-1575043694:27560..27707Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:26708..26773TCONS_00005022-exon-sc0000050-1575043694:26708..26773Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:26210..26301TCONS_00005022-exon-sc0000050-1575043694:26210..26301Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:25570..25624TCONS_00005022-exon-sc0000050-1575043694:25570..25624Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:24762..24818TCONS_00005022-exon-sc0000050-1575043694:24762..24818Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:23587..23936TCONS_00005022-exon-sc0000050-1575043694:23587..23936Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:23144..23434TCONS_00005022-exon-sc0000050-1575043694:23144..23434Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1575043694:21887..22877TCONS_00005022-exon-sc0000050-1575043694:21887..22877Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:27560..27707TCONS_00005022-exon-sc0000050-1510915933:27560..27707Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:26708..26773TCONS_00005022-exon-sc0000050-1510915933:26708..26773Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:26210..26301TCONS_00005022-exon-sc0000050-1510915933:26210..26301Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:25570..25624TCONS_00005022-exon-sc0000050-1510915933:25570..25624Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:24762..24818TCONS_00005022-exon-sc0000050-1510915933:24762..24818Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:23587..23936TCONS_00005022-exon-sc0000050-1510915933:23587..23936Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:23144..23434TCONS_00005022-exon-sc0000050-1510915933:23144..23434Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1510915933:21887..22877TCONS_00005022-exon-sc0000050-1510915933:21887..22877Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:27560..27707TCONS_00005022-exon-sc0000050-1491911889:27560..27707Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:26708..26773TCONS_00005022-exon-sc0000050-1491911889:26708..26773Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:26210..26301TCONS_00005022-exon-sc0000050-1491911889:26210..26301Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:25570..25624TCONS_00005022-exon-sc0000050-1491911889:25570..25624Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:24762..24818TCONS_00005022-exon-sc0000050-1491911889:24762..24818Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:23587..23936TCONS_00005022-exon-sc0000050-1491911889:23587..23936Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:23144..23434TCONS_00005022-exon-sc0000050-1491911889:23144..23434Clytia hemisphaericaexon
TCONS_00005022-exon-sc0000050-1491911889:21887..22877TCONS_00005022-exon-sc0000050-1491911889:21887..22877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:21887..27707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0046185	0.161605	0	0	0	0	0.281252	6.55038e-09	0	0.149995	0	0.659969	0	0	0	0.124733	0.369774	0	0.506847	0.557349	0.127862	1.29751	0.479606	0.467872	0	0	0.00010002	0.397114	3.98235	4.73428
Blast
[Close]
BLAST of TCONS_00005022 vs. Swiss-Prot (Human)
Match: BOLL (Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.579e-22
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 2 
Query:  161 KYGIQIPNRVFVGGVAFDTKEDELKGFFQQYGKIKECKIIKDNQSISRGFAFVTFESKHDAIQA-QQKGTVFFNQKKLNLGPAIRQK 418
            +YG  IPNR+FVGG+ F T E +L+ FF QYG +KE KI+ D   +S+G+ FVTFE++ DA +  Q+   + +  KKLN+GPAIR++
Sbjct:   26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQ 112
The following BLAST results are available for this feature:
BLAST of TCONS_00005022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOLL2.579e-2249.43Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV... [more]
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