TCONS_00005019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005019
Unique NameTCONS_00005019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005019 ID=TCONS_00005019|Name=TCONS_00005019|organism=Clytia hemisphaerica|type=transcript|length=2200bp
TTTTACTATCAAAGGAATAAATTACTTTACAACCCCCGTCTCGATTTGCA
ATGATTATAGGTATATTCCCAAGCTACTCAAAAGTGTCAATGACATTTGT
GTTCATTCAGAAAGCGcgacaaagaaaacaaaaccaCAAACAAGCCTTTT
GAGGATAACTGCCCCAATTTCTCATGCATGGATAGATTTTATAATTGAGG
GATCTGCACTTGAATTTGACACATCAGAAGAAAACAGAGAAACGAACGTT
GTTGGTCATCAAAGATAGTAAAGGAGTGGCAAAATTTGTTAGAAAATGGC
TGATGTTGTAAAGTACGGTATCCAAATTCCTAATCGTGTTTTTGTCGGTG
GAGTTGCCTTTGACACAAAGGAGGATGAACTGAAGGGCTTTTTTCAACAA
TATGGAAAAATCAAGGAATGTAAAATTATCAAAGACAATCAAAGCATCAG
TCGAGGATTCGCATTTGTTACGTTTGAGAGCAAACATGACGCAATTCAAG
CTCAACAAaagggCACAGTATTTTTCAATCAGAAAAAGTTGAACTTGGGT
CCTGCTATCAGGCAAAAGATCCTGTGCTCTCAACTGGAGTTTATATCCAT
CCCAGCGGATATTCTTATACAGTTGCTCCAAATGGTGTGTGGTATTTTCA
CAAACCAGATGGCTCGCCACCTTCGACAGCCCCTGGCGCACCACCTATGG
CTTATACACCAACAACAATGCAAAAAATAGCCTCGCAAAGTTCTCCCACC
TCTACCAAAGCATCTAGCAGTGAGAAGATGCAAGAAAGTGGTGTAGATGA
AAACAGAGCAAATACTACTGTTACTCATTCCAATATGCCAATTTATCAAA
ACCCTGGAGTCATCCAAGAACCAGTGCAAATACCTCAGACTACAATTCAA
CCAGATATCCACTACCAGCCAACAAGCTATGTTCAACATACTCATTCAAC
TTTTGGAGGATCAAATATCCATGTTGCTTTTCAAAACATGTCCATAACTA
CTCATCCACAAACAACGCCCATTCCAGTTGGCCCAGCCGCTCAGATGACT
GTTCCACTCACTATTCCTCCCTCCTCGGAGCATATACCTGCTGATATGAA
TGGTGGTCATAATCCTGGTTTTAATTATGTTAACGAATCATGCATGCCAT
ATTACCCAAATGGAAAATATTGTAGTCAGGGTTCTCAGACAGGTGCTATT
CCAGCCGATCCATCCAGACCAGTTCCATACCCTATGATACCCAGAACAGA
CTACATCCCTGTTGTTAATTCTTCAATGTACACCATTTATGGAGATGCTT
TTTCCCAGCAGCAACAGCCAGCTTACTTCTTACCAAACAGCTATGTGGAT
CAACCATACTGTTCCTCCCAAGTTCCAATGGTAAACTGCTCTAAGAGAGG
GTATTATCCACCACAAATCCCTAATGGAAAACCACCTGTAAAGAAAGAGA
CATCAAATGttatgaaaaataattataaCCAAATGCACCTTCAATCGCAA
GTCGTTTAGAAAGAATTATCATCCATTTACTTGTTTGGAATGAAAAAccg
aaaaatttttaaatgtttttgatcatttttttaaCCGAATATTAGAATTG
TATTTTGTAAATACATTTAgtctatgttttgttataaaacTTCAATCCAT
TTTTTCAGATATAACAAATGCTTATTATCAGTTTTGTTTGATATAATGCA
GAtgttatttttaattgtttctagATTTATGTTGTATTGTCCTTAATTAT
TTGATACAATGAATCTTGTGCGTGAGAATATTTTCTGTGTttgtgtttat
ttcatttttatttaatatgttggttaaattatttaaaattttatgtacaa
AGGGGCTTCAATCTCTACAAAATTAGTTTTTCTTGTCATCTTGTGGTGGA
AGACTCCAGATAAtaagatttttaaaactttattttatcTACCTCACTAT
GCTTAGCTTGTTTAAAagctaaaatttttattttatcaaaaataaaagct
aaaatttttattttatcaaaaaataaatcaaatataaTTCAGAAATTTTT
ATTGTGCGAATATCACGGTCGTATTATGTTTTGACCTAATAAAtgttttt
gtcaatatttggaatgtaatttttcaaatttatgttGTATCGTTATATTT
GGGGCCAATCTCCAAAATACTCTTTAAAATAGCTAAAATCCTTACAAATC
Run BLAST on NCBI

transcript from alignment at sc0000050:21887..27297-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005019 ID=TCONS_00005019|Name=TCONS_00005019|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at sc0000050:21887..27297- (Clytia hemisphaerica)
TTTTACTATCAAAGGAATAAATTACTTTACAACCCCCGTCTCGATTTGCA
ATGATTATAGGTATATTCCCAAGCTACTCAAAAGTGTCAATGACATTTGT
GTTCATTCAGAAAGCGCGACAAAGAAAACAAAACCACAAACAAGCCTTTT
GAGGATAACTGCCCCAATTTCTCATGCATGGATAGATTTTATAATTGAGG
GATCTGCACTTGAATTTGACACATCAGAAGAAAACAGAGAAACGAACGTT
GTTGGTCATCAAAGATAGTAAAGGAGTGGCAAAATTTGTTAGAAAATGGT
TTGGAAAAACTTTTTCTTTTACTACTACTTTGCATTTTTTACTGTTCAAC
CAAGTTTTTTACGGGTTTGTCCTCAAATATGAGTATTTCTCAAAGGTGAT
TGAGTGACTAGATAAGTTTAGCAAGTGACGTTTCTTCTGTGTACTTCTCA
TTACATTATCAATTTAAAGTTTTTTGTTTTTTTTAGTAAATTCGTGTTTT
AGCCTATTTACAATTTTCTTTCAGGCTGATGTTGTAAAGTACGGTATCCA
AATTCCTAATCGTGTTTTTGTCGGTGGAGTTGCCTTTGACGTATGTATTG
ATTGTTATCTTTTTGTTATTATTTCCTCTGCTCTCTAGAATTCGAGCATT
ATTCTTCATGATTAGATCTTCAACGACCTAAAAAAAGGTCCAATTGAATA
GTAGAGCGTCGTTTAGGAGATTTTATTGTTGACACGAAGACTTTCAATAT
TATCGAATAATGGAGGGTATCGAATAGTAGAATGTCGAATAAGAGTGTCA
ACTGTAATATGTATCGATTTAAAAGCTCGAAAAGTTTTTTCCGCAATCAT
AAGTGCATTTTACACCCGAAGTGCACTCCCAGAAGCAAACTTTTATTTTG
TTCGTGGTTGCACCCTCCCTGTTTCTACATATACCCGTGGCCTGTTTTAT
TCATTCACTCATTCATTCATTCGTGGTGCTCTTTTCTTCCATGTAGACAA
AGGAGGATGAACTGAAGGGCTTTTTTCAACAATATGGAAAAATCAAGGAA
TGTAAAATTATCAAAGACAATCAAAGCATCAGTCGAGGGTAAGATTAAGA
GCTGTTCGGTTTTTCTAGTCTTTACAACTCTGCCAAAGCTCCCGCCATGA
TGTAGCCTAGGTTTTTAGTACAGGTGTTATCTTACTTAAAATATTTGTGC
TTTTTAGACCTTTTCTTTTCAACTTCGAACTGGTAATCGCAAGTAAACTT
TCTTAGGGATTGAAATTCGTCTCATCTCAAATGTACTCGAACAAGTGAAG
TTCGAGTAAAAAAATTACTCTAACTCTTCACAATTTTTCAAAAGCATAAG
TTCGAGCAAGTTTGATATGAAAATTGTAAACTATAAATTAAGCAAATTTG
ATTTCTTTTTGCTCTTAAATAGAAGGAAACTTGTTCAAATTTTCCCAGTA
AGGCTCGTAAAATCCATAGAATCTTATGTTCAACGGAACTCATCAATCTC
TAATCAAACTCCTCACAAATTTTTGAAAGTTTCCAAAAGTTCATAGAGGA
ATTACTCGAACTTTACTTGTTCGAGTAATGGGGTCTAGACTTATAAAGGT
ACTTATTATTGTCAGATTTTTCAGTTTTTTCCGAACGAGATACAACGCAA
TTTAAAATTAATTTTTTAACTAGATTCGCATTTGTTACGTTTGAGAGCAA
ACATGACGCAATTCAAGCTCAACAAAAGGTTTGAAATATTTGAAATGTAT
TTTAGTCACTTTTCTACTAGAAGAAACATAGGACCAAATTTTTGGAATTT
TTTGTTTAAACATTGAGCCGAACGTGAACACCCGGGGGGGGGCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGACAGTGGGTTTACCAACTGACGGTATGAGCGG
CGAAAAATTGGCTTTTAGAATCGCACCCTTGTAGTGCAGAAAAGAATAGG
TGAAATTCATCCCCATACAGTGCATTTTTCAAATTTTAAACTCTTTTAGA
GCAAAAAAAATCAACTTTTTCGAGCAAAAATTTACAACTTTTTCCAGACT
TGCTGAAATTTCCACCCTTACAGTGCATTTATCAAAAGTCCACCCTTACA
GTGCATTTCTGATATTTTGAAAAGCATACCCTTAAACGCCGCATATACCC
GTCGGTCAATTTGCCTGACTGCCCCCCCCCCCTCTCCGGGCGTGAACAAT
ACGGACCATTGTAACCTTGCCAACAAATACGGCACTTTTAGCAGGCTAGA
TTTTTAGTGTTTGATTCACATTTACCGGACCTGCCGGAACATATGCCGGG
AAATGCGGTAATCAATACGGGCATTATATTTGAGACATCACCGATGGGAT
TCCCCTACAACTTTCACTTTCGTTTTCAGGGCACAGTATTTTTCAATCAG
AAAAAGTTGAACTTGGGTCCTGCTATCAGGCAAAAGGTTTGTCAGTTTAC
TCTTTTCTTTAAATATTATTCAATTTCATTTGAAACTGCTTTTCTATCTA
ATGATCTTGAGGGCATAGTCCAATCTTTAATGTTGAAGGGTTTGTTAGAG
TATATCCTTTTCTGTTTTCAAAGCAAGGGGCCCTAATATTAGGTATTTGC
ACTGAAAGATTTACTTTAACGGCTAAGTTGTATTTGATTTGTTCCTACTT
CCAACATTTTTTACTCTTATTTATCTCCATCCAGGGGGAAACTAGGGCTG
CCAGTTAACAATAGGCAACCCAACTTTGAACCCACTCTTACCCATATCAG
GATTAGAGAAAATACCACTTTGTGAATATTAATACCATTGCTTGTACTAA
TTTGACCACATTTCTATCTCTCAACAGGCAAAAAGTTGAAACTTACTATT
TTTCTGTCCCTTATTGAGACTGGGATTTAATTTTCTCACTCTTCTAACCC
TTACAGAGACACCCAGGTTCCACTTCATTTGCCTAGCTATCCCCTGGGTC
TGGGTAGAACAATAGTAAAGGGTCTTTAAATGTAATTATTGAAATTTAGG
GAGTCGTGTTCAATGGAACCAAGGAAGCAGGAAATGGTATGAAGATGATT
TCAATTTTCACAAATTATGATTGTCAAAACTCGAATCTGTCTAATGTTTG
CTTTAGAGAGAGAACTTGATCAAGGTTATTATTGGATCAGCAGAACAAAT
AATTGCCTCTCCTAACACATATATATACATGAAGCAATTTTTTGTTACCT
TTTTCTATATTTCTATGTGATTTTAATTAATTCAAATGAGTCTACTCATT
GTTCATTTTAGATCCTGTGCTCTCAACTGGAGTTTATATCCATCCCAGCG
GATATTCTTATACAGTTGCTCCAAATGGTGTGTGGTATTTTCACAAACCA
GATGGCTCGCCACCTTCGACAGCCCCTGGCGCACCACCTATGGCTTATAC
ACCAACAACAATGCAAAAAATAGCCTCGCAAAGTTCTCCCACCTCTACCA
AAGCATCTAGCAGTGAGAAGATGCAAGAAAGTGGTGTAGATGAAAACAGA
GCAAATACTACTGTTACTCATTCCAATATGCCAATTTATCAAAACCCTGG
AGTCATCCAAGAACCAGTGCAAATACCTCAGACTACAATTCAACCAGATA
TCCACTACCAGGTTAATGATTTTCTAATCATCTTTGATTTCTTTGAAAAG
ATTGGCTCATGTCATCAGAAAGCTTTATTGTGTATTGTTGCCTATTTTTC
TGGCAATTTTAATTTTTTTTTTTCAGCAAAGCTAAATATGAAATAACTAT
CCTATATTTACAGCCAACAAGCTATGTTCAACATACTCATTCAACTTTTG
GAGGATCAAATATCCATGTTGCTTTTCAAAACATGTCCATAACTACTCAT
CCACAAACAACGCCCATTCCAGTTGGCCCAGCCGCTCAGATGACTGTTCC
ACTCACTATTCCTCCCTCCTCGGAGCATATACCTGCTGATATGAATGGTG
GTCATAATCCTGGTTTTAATTATGTTAACGAATCATGCATGCCATATTAC
CCAAATGGAAAATATTGTAGTCAGGGTTCTCAGACAGGTGCTATTCCAGC
CGATGTAAGTTTTCTTTCAATAAATTCTTCATTTGCTTAGGTTAACCAAA
CATAAGGATAAGACATTTTTGTGGATTTTTCAAGAGATCTCTATTTCTAT
AAATTGATCCAAAGGGTACTTACATTTTCCCGCATATAAACTAACAATAC
CACAGTTTGAACTGATTAAGATATCTCACTTTTTGAATAACTTAACTTAA
CAAGGCATAACATAATTCATAATTCAAATTTGGTTTGCTCCATAAGTATT
TAATTTATTCTTTTTCCCAGCCATCCAGACCAGTTCCATACCCTATGATA
CCCAGAACAGACTACATCCCTGTTGTTAATTCTTCAATGTACACCATTTA
TGGAGATGCTTTTTCCCAGCAGCAACAGCCAGCTTACTTCTTACCAAACA
GCTATGTGGATCAACCATACTGTTCCTCCCAAGTTCCAATGGTAAACTGC
TCTAAGAGAGGGTATTATCCACCACAAATCCCTAATGGAAAACCACCTGT
AAAGAAAGAGACATCAAATGTTATGAAAAATAATTATAACCAAATGCACC
TTCAATCGCAAGTCGTTTAGAAAGAATTATCATCCATTTACTTGTTTGGA
ATGAAAAACCGAAAAATTTTTAAATGTTTTTGATCATTTTTTTAACCGAA
TATTAGAATTGTATTTTGTAAATACATTTAGTCTATGTTTTGTTATAAAA
CTTCAATCCATTTTTTCAGATATAACAAATGCTTATTATCAGTTTTGTTT
GATATAATGCAGATGTTATTTTTAATTGTTTCTAGATTTATGTTGTATTG
TCCTTAATTATTTGATACAATGAATCTTGTGCGTGAGAATATTTTCTGTG
TTTGTGTTTATTTCATTTTTATTTAATATGTTGGTTAAATTATTTAAAAT
TTTATGTACAAAGGGGCTTCAATCTCTACAAAATTAGTTTTTCTTGTCAT
CTTGTGGTGGAAGACTCCAGATAATAAGATTTTTAAAACTTTATTTTATC
TACCTCACTATGCTTAGCTTGTTTAAAAGCTAAAATTTTTATTTTATCAA
AAATAAAAGCTAAAATTTTTATTTTATCAAAAAATAAATCAAATATAATT
CAGAAATTTTTATTGTGCGAATATCACGGTCGTATTATGTTTTGACCTAA
TAAATGTTTTTGTCAATATTTGGAATGTAATTTTTCAAATTTATGTTGTA
TCGTTATATTTGGGGCCAATCTCCAAAATACTCTTTAAAATAGCTAAAAT
CCTTACAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002847XLOC_002847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005019-exon-sc0000050-1575043694:27000..27297TCONS_00005019-exon-sc0000050-1575043694:27000..27297Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:26708..26773TCONS_00005019-exon-sc0000050-1575043694:26708..26773Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:26210..26301TCONS_00005019-exon-sc0000050-1575043694:26210..26301Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:25570..25624TCONS_00005019-exon-sc0000050-1575043694:25570..25624Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:24762..24818TCONS_00005019-exon-sc0000050-1575043694:24762..24818Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:23587..23936TCONS_00005019-exon-sc0000050-1575043694:23587..23936Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:23144..23434TCONS_00005019-exon-sc0000050-1575043694:23144..23434Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1575043694:21887..22877TCONS_00005019-exon-sc0000050-1575043694:21887..22877Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:27000..27297TCONS_00005019-exon-sc0000050-1510915933:27000..27297Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:26708..26773TCONS_00005019-exon-sc0000050-1510915933:26708..26773Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:26210..26301TCONS_00005019-exon-sc0000050-1510915933:26210..26301Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:25570..25624TCONS_00005019-exon-sc0000050-1510915933:25570..25624Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:24762..24818TCONS_00005019-exon-sc0000050-1510915933:24762..24818Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:23587..23936TCONS_00005019-exon-sc0000050-1510915933:23587..23936Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:23144..23434TCONS_00005019-exon-sc0000050-1510915933:23144..23434Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1510915933:21887..22877TCONS_00005019-exon-sc0000050-1510915933:21887..22877Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:27000..27297TCONS_00005019-exon-sc0000050-1491911889:27000..27297Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:26708..26773TCONS_00005019-exon-sc0000050-1491911889:26708..26773Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:26210..26301TCONS_00005019-exon-sc0000050-1491911889:26210..26301Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:25570..25624TCONS_00005019-exon-sc0000050-1491911889:25570..25624Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:24762..24818TCONS_00005019-exon-sc0000050-1491911889:24762..24818Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:23587..23936TCONS_00005019-exon-sc0000050-1491911889:23587..23936Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:23144..23434TCONS_00005019-exon-sc0000050-1491911889:23144..23434Clytia hemisphaericaexon
TCONS_00005019-exon-sc0000050-1491911889:21887..22877TCONS_00005019-exon-sc0000050-1491911889:21887..22877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:21887..27297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40648	1.46567	0	0	7.59197e-08	0	0	0.262432	0	0.346433	0.641673	0.247715	0.0775997	0.16359	0.472276	0	0	0	0	0	0.457288	0	1.07234	0.538511	0.00613136	0.00474125	0.385601	0.0033732	5.7001e-06	0
Blast
[Close]
BLAST of TCONS_00005019 vs. Swiss-Prot (Human)
Match: BOLL (Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.060e-22
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 2 
Query:  311 KYGIQIPNRVFVGGVAFDTKEDELKGFFQQYGKIKECKIIKDNQSISRGFAFVTFESKHDAIQA-QQKGTVFFNQKKLNLGPAIRQK 568
            +YG  IPNR+FVGG+ F T E +L+ FF QYG +KE KI+ D   +S+G+ FVTFE++ DA +  Q+   + +  KKLN+GPAIR++
Sbjct:   26 RYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQ 112
The following BLAST results are available for this feature:
BLAST of TCONS_00005019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOLL3.060e-2249.43Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV... [more]
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