TCONS_00005016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005016
Unique NameTCONS_00005016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005016 ID=TCONS_00005016|Name=TCONS_00005016|organism=Clytia hemisphaerica|type=transcript|length=697bp
TTTGAATTTTGTCTTGATATcgctttttcaaaatgttcatggtttttcga
aaaatctCTTTAAATTTTTAGTCTTTTACCTTTTTTCTGTGTTTCAATTT
TGTACTTTTCACAATTATCGAACTTTTCACATCAGACGCTTTTAAAATAC
AGTCAACACGGACATCTCTAATTCTCTCACAAGTAGGAAAATTTATTTCA
TGTAAATTCCTTTGCCTATTGCTtttctttccttgaaaattgaaacattt
tttattttgatagttGTATATATAACCTTAATAATACCAGTATTGAAAAC
AAGGCATCCAccgacctttatataccctggaccaacctatatccgccatc
tttgatcggaagTAGACCTaccgctctcgatgcatttacaccgctattga
gtaatgataccattagggtaccactttcaaaaaaactccgattaaAGATT
TCGCTTGGCTGGGAAACTTTGTCTAGGGTATATATATAAAGGTCAATGGG
CATATGTACGCCGGAGCCGGATATATCCGGTAcagattttcaatttcaag
gctACACCGAAAATACTTACCTTCCTTCGAAACTGGTAGTAATACTAACG
CCTTATAAAAATTGTatcatttatactttttttcaatatcacGAACTTAA
AATTTCAATGAGAAATACCTTGACCTGAGATGGAACTTCcttgaaaa
Run BLAST on NCBI

transcript from alignment at sc0000050:801114..801878+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005016 ID=TCONS_00005016|Name=TCONS_00005016|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at sc0000050:801114..801878+ (Clytia hemisphaerica)
TTTGAATTTTGTCTTGATATcgctttttcaaaatgttcatggtttttcga
aaaatctCTTTAAATTTTTAGTCTTTTACCTTTTTTCTGTGTTTCAATTT
TGTACTTTTCACAATTATCGAACTTTTCACATCAGACGCTTTTAAAATAC
AGTCAACACGGACATCTCTAATTCTCTCACAAGTAGGAAAATTTATTTCA
TGTAAATTCCTTTGCCTATTGCTtttctttccttgaaaattgaaacattt
tttattttgatagttGTATATATAACCTTAATAATACCAGTATTGAAAAC
AAGGCATCCAccgacctttatataccctggaccaacctatatccgccatc
tttgatcggaagTAGACCTaccgctctcgatgcatttacaccgctattga
gtaatgataccattagggtaccactttcaaaaaaactccgattaaAGATT
TCGCTTGGCTGGGAAACTTTGTCTAGGGTATATATATAAAGGTCAATGGG
CANTTCCAATTAAAGATTTCGCTTGGCTGGGAAACTTTGTCTAGGGTATT
TATATAAAGGTCAATGGGCATATGTACGCCGGAGCCGGATATATCCGGTA
cagattttcaatttcaaggctACACCGAAAATACTTACCTTCCTTCGAAA
CTGGTAGTAATACTAACGCCTTATAAAAATTGTatcatttatactttttt
tcaatatcacGAACTTAAAATTTCAATGAGAAATACCTTGACCTGAGATG
GAACTTCcttgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002844XLOC_002844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005016-exon-sc0000050-1491911889:801114..801604TCONS_00005016-exon-sc0000050-1491911889:801114..801604Clytia hemisphaericaexon
TCONS_00005016-exon-sc0000050-1510915933:801114..801604TCONS_00005016-exon-sc0000050-1510915933:801114..801604Clytia hemisphaericaexon
TCONS_00005016-exon-sc0000050-1575043694:801114..801604TCONS_00005016-exon-sc0000050-1575043694:801114..801604Clytia hemisphaericaexon
TCONS_00005016-exon-sc0000050-1491911889:801673..801878TCONS_00005016-exon-sc0000050-1491911889:801673..801878Clytia hemisphaericaexon
TCONS_00005016-exon-sc0000050-1510915933:801673..801878TCONS_00005016-exon-sc0000050-1510915933:801673..801878Clytia hemisphaericaexon
TCONS_00005016-exon-sc0000050-1575043694:801673..801878TCONS_00005016-exon-sc0000050-1575043694:801673..801878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:801114..801878 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.657637	0.708942	0.576205	0.40612	13.8237	10.8462	8.87943	11.988	5.27226	3.18714	3.68276	4.45446	2.36918	3.31404	1.98211	1.28474	4.03861	3.46819	1.93205	1.53653	5.48268	6.38589	2.25063	2.50085	4.21497	4.94602	3.98746	3.72359	2.66282	2.79521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top