TCONS_00005015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005015
Unique NameTCONS_00005015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005015 ID=TCONS_00005015|Name=TCONS_00005015|organism=Clytia hemisphaerica|type=transcript|length=2567bp
ATTGTCTAATGTTAACGGATGCATAGTAAATCTGAAAGGAGGTAAACACA
ATGAGtgatcaattttttaattttgaacaccCCCTTTTTTACAGAGCAAA
ATAaattaaacttgaaaaaaattgtatttgtcGTTGGCTATCAGTAATCA
AGCTGGATCCTGTGGTAGGTGTGACAAGTGAAAATGTGGTGGCAGGCATG
GAAAGTGCATCCAAAATGCCGGCACCAGTGGCAGAGAACTGGTGTTACAC
ACATGTCAAAGTTGTGAAATTCTCTTATATGTGGACAATCAATAATTTTA
GTTACTGTCGTGAAGAAATGGGTGAAACATTGAaaagttcaactttttca
gcTGGTGCAAATGATAAATTAAAATGgTGTTTGCGTATCAATCCTAAAGG
ATTAGATGAAGAAAGCAAAGATTATTTATCATTGTACTTATTGTTGCTTG
CATGTAACAAAAGTGAAGTTCGagctaaattcaaattttcaattctgAAT
GCGAAACGTGAAGAAACCAAAGCTATGGAGAGCCAAAGAGCATACCGATT
TGTGCAGGGAAAAGACTGGGGTTTCAAGAAGTTCATTAGGAGAGATTTTC
TGATGGATGAAGCTAATGGTTTACTACCTGAAGATAAGTTAACTATGTTT
TGCGAGGTTAGTGTTGTTGCCGACTCGGTGAATGTCTCCGGCCAATCGCT
GATGTCCAATTTGAAAGTACCTGACTCAGAACTGGCTGATAACATGAACA
ATTTATTAGACACTGGTAATTTCAGTGACATGgctttgaaaaataataac
atgACAATACCGGTACATAAAGCGATATTAGCTGCACGATCACCGGTTTT
CGCTGCCATGTTTCAACACGATTTGGAGGAGAATAAACAGGGTTTTGTGT
CCATCACTGATTTAGATATAGACGTTTTACGTGAAATGTTGAAATTTATT
TATACGGGGAAAGTGACGAGACTGGATGCGATGGCTGATTCCTTGCTCGC
TGCTGCAGATAAGTATGCACTGGACCGGTTGAAAGTGATGTGCGAGGAAG
CTTTAGCATCTAACTTGAACGTGGACAATGTTTGTGATGTCTTGGTGTTG
GCTGACCTTCACAATGCTCAACAACTCAAATCTGTTGCCATTGACTTCAC
TAACAGTCATGCGCAGGAAGTCATGGAACATTCTTCATGGCAGAAATTGG
TGAAGAATCATGCTAACATCATTGCAGAAGCATTTAGAGCTCTCGCCAGT
GTCCAAAGTTTCTCCTGCTCACCACCAAGGAAAAGACAGAAAACAGCTCG
TGTGGAACCGTGTGTTTGATGGAGCACTCGTTGATGCGTTCTGAACCAAT
CATATGTCACTATGATAGCGCGATAACCAATCACGTATCAGTATGGAGGG
TTTTCAGCCAATGAAAATTGTCGTTGGTGTTATGGATGGTCAACAAGTTA
TGTAGTGCTACTTTTTAGTTGATCAGATCCTTCAAGGAATAtctgttttg
actttttggaaACCTGACTTGAAGTGGGTCATACCagaatttgaaatgtc
attttgtTCTGGTCTAGTGAAAATTTGGATGAATCCGTTTACCAACACTA
CGAAATGTTGCTTTGACACCCTCTGAAAGTCATGGTCTTACGAGTAACAT
AACTAAAGAACTTCGAAAATGAACAAATTGTGTGTTAGAAGTGTCGATTT
TCAAATTGGATTTCGAAAATTACAAAGTATATGGTGTTGACATTTTATGG
AAAGTATATTACATGGGGagaaaaggttttatttttgtgttaCTGAACTT
TAAAAGTGTGTCCGAAAAAATTACATTCAGATCATAGGTGCTTTTTTCCG
GACAGACAGTATTTTTTAGACGCTTGTGTGAGCAGATTGTATTATATTAG
AAGAATTTTTATTAGCCTTTTATTAGAATGGTTTTAATCTATTTTAGCTT
TGTCTTCTTTTCTTACCCAAAGATGTTAACATTATCTTTTGGTATATAGC
GTGTCTGGATCAAAAGCGCCGATATTGAAATAGTAAATTGTCATAGTGAT
TTTCATCCTTTTTTCCAGACACGCTATAACAGAGGAAATCTTTTTACGTG
AGTAGAtattaattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgatttcttTTAGGTTTGATTGATATTATAGCAATAAGTATATAT
GTACAATAATTATTTACTTAGATATATATTATTCAAATTTATAGGATTTT
TTACATTACCTCGCCTGAATTTTAATCTGTTCGTTCTTTATAATTGTTAT
TGCAGCTTCGTTCCGACGACTGTCGGCGAACGACGTTAAGGTTGTCATGT
CCTTTCCTCCAAAGCTCTTTTTTATAGAATTGAACTCTTGTTACATGAcg
cttttttttgtttatatcagcacaaaataacaataggcagacattgtcct
gatatgaaatatgtgtctgatatgaaacgggaacacttatgaaaagataa
aaccttcaaaatgtaac
Run BLAST on NCBI

protein sequence of TCONS_00005015-protein

>TCONS_00005015-protein ID=TCONS_00005015-protein|Name=TCONS_00005015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MESASKMPAPVAENWCYTHVKVVKFSYMWTINNFSYCREEMGETLKSSTF
SAGANDKLKWCLRINPKGLDEESKDYLSLYLLLLACNKSEVRAKFKFSIL
NAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLMDEANGLLPEDKLTM
FCEVSVVADSVNVSGQSLMSNLKVPDSELADNMNNLLDTGNFSDMALKNN
NMTIPVHKAILAARSPVFAAMFQHDLEENKQGFVSITDLDIDVLREMLKF
IYTGKVTRLDAMADSLLAAADKYALDRLKVMCEEALASNLNVDNVCDVLV
LADLHNAQQLKSVAIDFTNSHAQEVMEHSSWQKLVKNHANIIAEAFRALA
SVQSFSCSPPRKRQKTARVEPCV
Run BLAST on NCBI

transcript from alignment at sc0000050:795188..801058+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005015 ID=TCONS_00005015|Name=TCONS_00005015|organism=Clytia hemisphaerica|type=transcript|length=5871bp|location=Sequence derived from alignment at sc0000050:795188..801058+ (Clytia hemisphaerica)
ATTGTCTAATGTTAACGGATGCATAGTAAATCTGAAAGGAGGTAAACACA
ATGAGtgatcaattttttaattttgaacaccCCCTTTTTTACAGAGCAAA
ATAaattaaacttgaaaaaaattgtatttgtcGTTGGCTATCAGTAATCA
AGCTGGATCCTGTGGTAGGTGTGACAAGTGAAAATGTGGTGGCAGGCATG
GAAAGTGCATCCAAAATGCCGGCACCAGTGGCAGAGAACTGGTGTTACAC
ACATGTCAAAGTTGTGAAATTCTCTTATATGTGGACAATCAATAATTTTA
GTTACTGTCGTGAAGAAATGGGTGAAACATTGAaaagttcaactttttca
gcTGGTGCAAATGATAAATTAAAATGGTATGTTTCTTTGTAATTCTAATC
CTGAGCCATACTGACTTTTACCAAGCTGATAAGAAGAAGATAAGTTTGGA
TAGTATGTTATGTAGTAGAAAATTCTTTCAATGAGATATTTAACGAGACC
TGTCTTTCTTGTTTATCCTGTACCTCCGGCTcagaaacaatttttaatgG
ATTCCATTGCATATCTAAAGccatacttgtttttttatttcattgaaata
atgaaaatattttaagggAGTTGGTTAAACTGAAGGTGTCCAAAATACCA
AGTCGATTTCGTCAGTTTTTTTCCCTCAATTTTTCGAATTGTGTATTTTC
ACAAGTTCTCGACAAATACTGCGTGTAATGAAAAACAACGTCATTATCTT
AACTGACCCTTTGGATATCCAGCCCTTTTGATGTTCGTTAAAATGTTGAT
TATTTCAAGGAATCTTGAACGCCTGAAAGTGCAGGGGaatgagaaaaaac
tttttttactgGGCATATCTTTTTTAACTTTactcacttttgtcccaggT
GTTTGCGTATCAATCCTAAAGGATTAGATGAAGAAAGCAAAGATTATTTA
TCATTGTACTTATTGTTGCTTGCATGTAACAAAAGTGAAGTTCGagctaa
attcaaattttcaattctgAATGCGAAACGTGAAGAAACCAAAGCTATGG
GTAAGTTTCATAAAAGCTTCAAGAAatgtagatttcaaaacaaatttagg
CTTATACCTATACCATGCTTGCAAAGTATTCAGGAAAAACTCCGCATTGT
AGATATTTTATCTCGTTATGCATGACAATCACCAACTAACTACGTGTTTT
GCTCATATTTTCAAtgtgacttttttcaaaattatcccACGTGTTTTAAT
TATTATTTCCTCGCAAATACATTCAGTTTTAATTTATGTTTCTTTAAGAG
TTTTTggcttgaaaatcaaaaatcaatttcgtTTTCTATAGAGAGCCAAA
GAGCATACCGATTTGTGCAGGGAAAAGACTGGGGTTTCAAGAAGTTCATT
AGGAGAGATTTTCTGATGGATGAAGCTAATGGTTTACTACCTGAAGATAA
GTTAACTATGTTTTGCGAGGTATGTACAAATTTATCTTGCTTTGAAAATA
AACGgagaaaccttttttccaatactTATATCCAATACTACTTTCCAATA
GTTTCCTGCTTTCTCAATTATTCATCTGTTGgttgttttctaagtatttt
ctAAGTATGATACCGCTCTGAAAATCACTGCATTCAgcacttttttgaat
tttacgtCAGTTATACAAATTTGGCTTGCATATTCTAAGCAGGTGGTTGG
TTGCTtgtgttagtttttttttttgctcagtcaTTGTAGTTGTATAAGCT
TGAATATTTACTTGTCTTGACGGAGGGGTGAATTCGGTTATTTCACTCGA
AGGCTTAATCGCTATAAGCCAGGGGTTTCCGTTCTCGTGGAAGCTAAAAG
TTATACCCCTATAAAAACAAATTGCTTGTCAAAGAAACTATGCACACAAT
GCTTTGAGTTGAAGCTTTGTCACTGTCAAATGTGCTTGTAAAACTCCTTC
GCATAAATAttaaatctttcaaagaatatagTGCGAAATCACAATAAGGT
TCCACTTCATGATTTCATGAATATCACTTTGTTGAGATTTTATTAGTTTA
CTGTCATTCATGCGAATCTTCATTCAAACAGAATTTATaccgattttaca
aaaaaaattgtttgtatCGAGTTCCTTGTTTATATATGTGTTTGGTTTAC
TAAACTTCAGTATGTTATGTTTGCGTGCTTTATTTTTCCTCccattttcg
ttttttataaaaagtgtttaaaaaccATCATTTAGAATGTAGAATGGTCA
CAGCCTTACTGTCTGATTTAGCACTGCAAATTAACCttaattctttttta
actttaaaatggAGGTGATATAATTTATGTTACGAATATTTCTTTCGATT
GCATTTTAATAAGGGAGCTCTGAATTTTTATATTCACAAATGATACTTAa
caaaatatttagcatatcggtttttttaaataaagttttttctctATTTG
CTAAGTAAAAAANaaaaatatttagcatatcggtctttttaaataaagtt
cTTTCTCTATTtgctaagtaaaaaaaaataactaTCTTCTGAAAATTACA
TGAAATGGTGgagattgaaaagaaaaatcttttttcagaggaattttaAT
AAGTTTCTCATGAAAAAGTAATGTTCTGTCCTCCAAACATCTCTGATCAT
CGAAAACATTTATCATACCCTAACAACTCCATTCTACCCTTCTTGCATGA
GTGTCTCAATTTTAGAAATGGTTTCCTTTAAGAAGGTTAGTATTCACATC
ATaaccatggcttggcagcaggtttaaGGTGCCACCTAAAGCATTACATA
ATGATTTCTACATAGCTTTTTAAATGTTATTACGTTAAACTATACTTTTT
TCACTGATATTCTGCCGATTtatagtgtgaaggtttcgatcacagacttg
caccgcaatGAACTGTGTTCGAATTCCAAGCACTTCCAGAGAGGGTGTTA
AGGAAACATAGTGATAgtgactctctaccttcactcatatATTAAATTAC
GCTGACGTTCGTAAAGCCTTATGTAATCTTCGAAACGACTGCTCAACCGG
CCATGACCAGATACCGTCGAAATACATTAAACTCGCCATCGATGAAATCT
GTAGNCACTCTCTCTCAATTcggctgataatcgaagtatcgattgacgtc
aaatgagcttagtgaagctcaaattgcagatgtagaacgataaactcggt
ataaatttatcttttccttttcatATACCCAGGTTAGTGTTGTTGCCGAC
TCGGTGAATGTCTCCGGCCAATCGCTGATGTCCAATTTGAAAGTACCTGA
CTCAGAACTGGCTGATAACATGAACAATTTATTAGACACTGGTAATTTCA
GTGACATGgctttgaaaaataataacatgACAATACCGGTACATAAAGCG
ATATTAGCTGCACGATCACCGGTTTTCGCTGCCATGTTTCAACACGATTT
GGAGGAGAATAAACAGGGTTTTGTGTCCATCACTGATTTAGATATAGACG
TTTTACGTGAAATGTTGAAATTTATTTATACGGGGAAAGTGACGAGACTG
GATGCGATGGCTGATTCCTTGCTCGCTGCTGCAGATAAGGTAAtcagtgt
tgcaacttttccCTGTGTAGACGGTAATTCGTCCAATTGAATTTTCAACC
CTGTATTTCTGTCCCAATTACAAGCCTTGAAATCAGGAATTTTGCAGAAT
TCGAATACTCGTAAACACATTTTCGTCTAGATAAACCAGGGACCCCCAGG
GATAGTTGAAACAATTGGAATATTGAGACATATTGCTATAGAGTGTCAAA
GACCACGTGTGTATTTTCGGGTCAAATCGATAGTGCTCAAGAAATCAATA
TGCATGATATACACTTTTCAGAACCATAAAAAGAAGAATCTCTCTCTCTT
GCTCTCTTCTATTTCGTATCGCATTAGGTACTCTGTAGCGGCATTGTTTT
TCCACTTTTAGTATGCACTGGACCGGTTGAAAGTGATGTGCGAGGAAGCT
TTAGCATCTAACTTGAACGTGGACAATGTTTGTGATGTCTTGGTGTTGGC
TGACCTTCACAATGCTCAACAACTCAAATCTGTTGCCATTGACTTCACTA
ACAGGTTAGTGTGACCATATTTCGTATTgctaattattttttctaaattc
ttcTTTTAAGATCTTCTACTTCGAATgtcttttgaatgttttgatttttc
gagTTATCTCCGCTCTTGTAGATATTTTTATTAACCCTTTGGATATCCAA
TAGCCtaacaaaatataaatattCGATATCcttcatttttgagaaaaccc
AAACCTTATTTTTCTGACGCCAATGAGCCTGCTTGAATGCTATAACGCAT
TAGTTATAGAAAGAAACGCACATTGTTCAATAAAGGATCTTTCTATGTAT
AGACTTGTCTTCAGTTTTTCCCTGCCATTCTGACCTtcctctttttttct
tctttaccaGTCATGCGCAGGAAGTCATGGAACATTCTTCATGGCAGAAA
TTGGTGAAGAATCATGCTAACATCATTGCAGAAGCATTTAGAGCTCTCGC
CAGTGTCCAAAGTTTCTCCTGCTCACCACCAAGGAAAAGACAGAAAACAG
CTCGTGTGGAACCGTGTGTTTGATGGAGCACTCGTTGATGCGTTCTGAAC
CAATCATATGTCACTATGATAGCGCGATAACCAATCACGTATCAGTATGG
AGGGTTTTCAGCCAATGAAAATTGTCGTTGGTGTTATGGATGGTCAACAA
GTTATGTAGTGCTACTTTTTAGTTGATCAGATCCTTCAAGGAATAtctgt
tttgactttttggaaACCTGACTTGAAGTGGGTCATACCagaatttgaaa
tgtcattttgtTCTGGTCTAGTGAAAATTTGGATGAATCCGTTTACCAAC
ACTACGAAATGTTGCTTTGACACCCTCTGAAAGTCATGGTCTTACGAGTA
ACATAACTAAAGAACTTCGAAAATGAACAAATTGTGTGTTAGAAGTGTCG
ATTTTCAAATTGGATTTCGAAAATTACAAAGTATATGGTGTTGACATTTT
ATGGAAAGTATATTACATGGGGagaaaaggttttatttttgtgttaCTGA
ACTTTAAAAGTGTGTCCGAAAAAATTACATTCAGATCATAGGTGCTTTTT
TCCGGACAGACAGTATTTTTTAGACGCTTGTGTGAGCAGATTGTATTATA
TTAGAAGAATTTTTATTAGCCTTTTATTAGAATGGTTTTAATCTATTTTA
GCTTTGTCTTCTTTTCTTACCCAAAGATGTTAACATTATCTTTTGGTATA
TAGCGTGTCTGGATCAAAAGCGCCGATATTGAAATAGTAAATTGTCATAG
TGATTTTCATCCTTTTTTCCAGACACGCTATAACAGAGGAAATCTTTTTA
CGTGAGTAGAtattaattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgattgatttcttTTAGGTTTGATTGATATTATAGCAATAAGTAT
ATATGTACAATAATTATTTACTTAGATATATATTATTCAAATTTATAGGA
TTTTTTACATTACCTCGCCTGAATTTTAATCTGTTCGTTCTTTATAATTG
TTATTGCAGCTTCGTTCCGACGACTGTCGGCGAACGACGTTAAGGTTGTC
ATGTCCTTTCCTCCAAAGCTCTTTTTTATAGAATTGAACTCTTGTTACAT
GAcgcttttttttgtttatatcagcacaaaataacaataggcagacattg
tcctgatatgaaatatgtgtctgatatgaaacgggaacacttatgaaaag
ataaaaccttcaaaatgtaac

Coding sequence (CDS) from alignment at sc0000050:795188..801058+

>TCONS_00005015 ID=TCONS_00005015|Name=TCONS_00005015|organism=Clytia hemisphaerica|type=CDS|length=6732bp|location=Sequence derived from alignment at sc0000050:795188..801058+ (Clytia hemisphaerica)
ATGGAAAGTGCATCCAAAATGCCGGCACCAGTGGCAGAGAACTGGTGTTA
CACACATGTCAAAGTTGTGAAATTCTCTTATATGTGGACAATCAATAATT
TTAGTTACTGTCGTGAAGAAATGGGTGAAACATTGAaaagttcaactttt
tcagcTGGTGCAAATGATAAATTAAAATGgTGTTTGCGTATCAATCCTAA
AGGATTAGATGAAGAAAGCAAAGATTATTTATCATTGTACTTATTGTTGC
TTGCATGTAACAAAAGTGAAGTTCGagctaaattcaaattttcaattctg
AATGCGAAACGTGAAGAAACCAAAGCTATGGAGAGCCAAAGAGCATACCG
ATTTGTGCAGGGAAAAGACTGGGGTTTCAAGAAGTTCATTAGGAGAGATT
TTCTGATGGATGAAGCTAATGGTTTACTACCTGAAGATAAGTTAACTATG
TTTTGCGAGGTTAGTGTTGTTGCCGACTCGGTGAATGTCTCCGGCCAATC
GCTGATGTCCAATTTGAAAGTACCTGACTCAGAACTGGCTGATAACATGA
ACAATTTATTAGACACTGGTAATTTCAGTGACATGgctttgaaaaataat
aacatgACAATACCGGTACATAAAGCGATATTAGCTGCACGATCACCGGT
TTTCGCTGCCATGTTTCAACACGATTTGGAGGAGAATAAACAGGGTTTTG
TGTCCATCACTGATTTAGATATAGACGTTTTACGTGAAATGTTGAAATTT
ATTTATACGGGGAAAGTGACGAGACTGGATGCGATGGCTGATTCCTTGCT
CGCTGCTGCAGATAAGTATGCACTGGACCGGTTGAAAGTGATGTGCGAGG
AAGCTTTAGCATCTAACTTGAACGTGGACAATGTTTGTGATGTCTTGGTG
TTGGCTGACCTTCACAATGCTCAACAACTCAAATCTGTTGCCATTGACTT
CACTAACAGTCATGCGCAGGAAGTCATGGAACATTCTTCATGGCAGAAAT
TGGTGAAGAATCATGCTAACATCATTGCAGAAGCATTTAGAGCTCTCGCC
AGTGTCCAAAGTTTCTCCTGCTCACCACCAAGGAAAAGACAGAAAACAGC
TCGTGTGGAACCGTGTGTTTGAATGGAAAGTGCATCCAAAATGCCGGCAC
CAGTGGCAGAGAACTGGTGTTACACACATGTCAAAGTTGTGAAATTCTCT
TATATGTGGACAATCAATAATTTTAGTTACTGTCGTGAAGAAATGGGTGA
AACATTGAaaagttcaactttttcagcTGGTGCAAATGATAAATTAAAAT
GgTGTTTGCGTATCAATCCTAAAGGATTAGATGAAGAAAGCAAAGATTAT
TTATCATTGTACTTATTGTTGCTTGCATGTAACAAAAGTGAAGTTCGagc
taaattcaaattttcaattctgAATGCGAAACGTGAAGAAACCAAAGCTA
TGGAGAGCCAAAGAGCATACCGATTTGTGCAGGGAAAAGACTGGGGTTTC
AAGAAGTTCATTAGGAGAGATTTTCTGATGGATGAAGCTAATGGTTTACT
ACCTGAAGATAAGTTAACTATGTTTTGCGAGGTTAGTGTTGTTGCCGACT
CGGTGAATGTCTCCGGCCAATCGCTGATGTCCAATTTGAAAGTACCTGAC
TCAGAACTGGCTGATAACATGAACAATTTATTAGACACTGGTAATTTCAG
TGACATGgctttgaaaaataataacatgACAATACCGGTACATAAAGCGA
TATTAGCTGCACGATCACCGGTTTTCGCTGCCATGTTTCAACACGATTTG
GAGGAGAATAAACAGGGTTTTGTGTCCATCACTGATTTAGATATAGACGT
TTTACGTGAAATGTTGAAATTTATTTATACGGGGAAAGTGACGAGACTGG
ATGCGATGGCTGATTCCTTGCTCGCTGCTGCAGATAAGTATGCACTGGAC
CGGTTGAAAGTGATGTGCGAGGAAGCTTTAGCATCTAACTTGAACGTGGA
CAATGTTTGTGATGTCTTGGTGTTGGCTGACCTTCACAATGCTCAACAAC
TCAAATCTGTTGCCATTGACTTCACTAACAGTCATGCGCAGGAAGTCATG
GAACATTCTTCATGGCAGAAATTGGTGAAGAATCATGCTAACATCATTGC
AGAAGCATTTAGAGCTCTCGCCAGTGTCCAAAGTTTCTCCTGCTCACCAC
CAAGGAAAAGACAGAAAACAGCTCGTGTGGAACCGTGTGTTTGAATGGAA
AGTGCATCCAAAATGCCGGCACCAGTGGCAGAGAACTGGTGTTACACACA
TGTCAAAGTTGTGAAATTCTCTTATATGTGGACAATCAATAATTTTAGTT
ACTGTCGTGAAGAAATGGGTGAAACATTGAaaagttcaactttttcagcT
GGTGCAAATGATAAATTAAAATGgTGTTTGCGTATCAATCCTAAAGGATT
AGATGAAGAAAGCAAAGATTATTTATCATTGTACTTATTGTTGCTTGCAT
GTAACAAAAGTGAAGTTCGagctaaattcaaattttcaattctgAATGCG
AAACGTGAAGAAACCAAAGCTATGGAGAGCCAAAGAGCATACCGATTTGT
GCAGGGAAAAGACTGGGGTTTCAAGAAGTTCATTAGGAGAGATTTTCTGA
TGGATGAAGCTAATGGTTTACTACCTGAAGATAAGTTAACTATGTTTTGC
GAGGTTAGTGTTGTTGCCGACTCGGTGAATGTCTCCGGCCAATCGCTGAT
GTCCAATTTGAAAGTACCTGACTCAGAACTGGCTGATAACATGAACAATT
TATTAGACACTGGTAATTTCAGTGACATGgctttgaaaaataataacatg
ACAATACCGGTACATAAAGCGATATTAGCTGCACGATCACCGGTTTTCGC
TGCCATGTTTCAACACGATTTGGAGGAGAATAAACAGGGTTTTGTGTCCA
TCACTGATTTAGATATAGACGTTTTACGTGAAATGTTGAAATTTATTTAT
ACGGGGAAAGTGACGAGACTGGATGCGATGGCTGATTCCTTGCTCGCTGC
TGCAGATAAGTATGCACTGGACCGGTTGAAAGTGATGTGCGAGGAAGCTT
TAGCATCTAACTTGAACGTGGACAATGTTTGTGATGTCTTGGTGTTGGCT
GACCTTCACAATGCTCAACAACTCAAATCTGTTGCCATTGACTTCACTAA
CAGTCATGCGCAGGAAGTCATGGAACATTCTTCATGGCAGAAATTGGTGA
AGAATCATGCTAACATCATTGCAGAAGCATTTAGAGCTCTCGCCAGTGTC
CAAAGTTTCTCCTGCTCACCACCAAGGAAAAGACAGAAAACAGCTCGTGT
GGAACCGTGTGTTTGAATGGAAAGTGCATCCAAAATGCCGGCACCAGTGG
CAGAGAACTGGTGTTACACACATGTCAAAGTTGTGAAATTCTCTTATATG
TGGACAATCAATAATTTTAGTTACTGTCGTGAAGAAATGGGTGAAACATT
GAaaagttcaactttttcagcTGGTGCAAATGATAAATTAAAATGgTGTT
TGCGTATCAATCCTAAAGGATTAGATGAAGAAAGCAAAGATTATTTATCA
TTGTACTTATTGTTGCTTGCATGTAACAAAAGTGAAGTTCGagctaaatt
caaattttcaattctgAATGCGAAACGTGAAGAAACCAAAGCTATGGAGA
GCCAAAGAGCATACCGATTTGTGCAGGGAAAAGACTGGGGTTTCAAGAAG
TTCATTAGGAGAGATTTTCTGATGGATGAAGCTAATGGTTTACTACCTGA
AGATAAGTTAACTATGTTTTGCGAGGTTAGTGTTGTTGCCGACTCGGTGA
ATGTCTCCGGCCAATCGCTGATGTCCAATTTGAAAGTACCTGACTCAGAA
CTGGCTGATAACATGAACAATTTATTAGACACTGGTAATTTCAGTGACAT
GgctttgaaaaataataacatgACAATACCGGTACATAAAGCGATATTAG
CTGCACGATCACCGGTTTTCGCTGCCATGTTTCAACACGATTTGGAGGAG
AATAAACAGGGTTTTGTGTCCATCACTGATTTAGATATAGACGTTTTACG
TGAAATGTTGAAATTTATTTATACGGGGAAAGTGACGAGACTGGATGCGA
TGGCTGATTCCTTGCTCGCTGCTGCAGATAAGTATGCACTGGACCGGTTG
AAAGTGATGTGCGAGGAAGCTTTAGCATCTAACTTGAACGTGGACAATGT
TTGTGATGTCTTGGTGTTGGCTGACCTTCACAATGCTCAACAACTCAAAT
CTGTTGCCATTGACTTCACTAACAGTCATGCGCAGGAAGTCATGGAACAT
TCTTCATGGCAGAAATTGGTGAAGAATCATGCTAACATCATTGCAGAAGC
ATTTAGAGCTCTCGCCAGTGTCCAAAGTTTCTCCTGCTCACCACCAAGGA
AAAGACAGAAAACAGCTCGTGTGGAACCGTGTGTTTGAATGGAAAGTGCA
TCCAAAATGCCGGCACCAGTGGCAGAGAACTGGTGTTACACACATGTCAA
AGTTGTGAAATTCTCTTATATGTGGACAATCAATAATTTTAGTTACTGTC
GTGAAGAAATGGGTGAAACATTGAaaagttcaactttttcagcTGGTGCA
AATGATAAATTAAAATGgTGTTTGCGTATCAATCCTAAAGGATTAGATGA
AGAAAGCAAAGATTATTTATCATTGTACTTATTGTTGCTTGCATGTAACA
AAAGTGAAGTTCGagctaaattcaaattttcaattctgAATGCGAAACGT
GAAGAAACCAAAGCTATGGAGAGCCAAAGAGCATACCGATTTGTGCAGGG
AAAAGACTGGGGTTTCAAGAAGTTCATTAGGAGAGATTTTCTGATGGATG
AAGCTAATGGTTTACTACCTGAAGATAAGTTAACTATGTTTTGCGAGGTT
AGTGTTGTTGCCGACTCGGTGAATGTCTCCGGCCAATCGCTGATGTCCAA
TTTGAAAGTACCTGACTCAGAACTGGCTGATAACATGAACAATTTATTAG
ACACTGGTAATTTCAGTGACATGgctttgaaaaataataacatgACAATA
CCGGTACATAAAGCGATATTAGCTGCACGATCACCGGTTTTCGCTGCCAT
GTTTCAACACGATTTGGAGGAGAATAAACAGGGTTTTGTGTCCATCACTG
ATTTAGATATAGACGTTTTACGTGAAATGTTGAAATTTATTTATACGGGG
AAAGTGACGAGACTGGATGCGATGGCTGATTCCTTGCTCGCTGCTGCAGA
TAAGTATGCACTGGACCGGTTGAAAGTGATGTGCGAGGAAGCTTTAGCAT
CTAACTTGAACGTGGACAATGTTTGTGATGTCTTGGTGTTGGCTGACCTT
CACAATGCTCAACAACTCAAATCTGTTGCCATTGACTTCACTAACAGTCA
TGCGCAGGAAGTCATGGAACATTCTTCATGGCAGAAATTGGTGAAGAATC
ATGCTAACATCATTGCAGAAGCATTTAGAGCTCTCGCCAGTGTCCAAAGT
TTCTCCTGCTCACCACCAAGGAAAAGACAGAAAACAGCTCGTGTGGAACC
GTGTGTTTGAATGGAAAGTGCATCCAAAATGCCGGCACCAGTGGCAGAGA
ACTGGTGTTACACACATGTCAAAGTTGTGAAATTCTCTTATATGTGGACA
ATCAATAATTTTAGTTACTGTCGTGAAGAAATGGGTGAAACATTGAaaag
ttcaactttttcagcTGGTGCAAATGATAAATTAAAATGgTGTTTGCGTA
TCAATCCTAAAGGATTAGATGAAGAAAGCAAAGATTATTTATCATTGTAC
TTATTGTTGCTTGCATGTAACAAAAGTGAAGTTCGagctaaattcaaatt
ttcaattctgAATGCGAAACGTGAAGAAACCAAAGCTATGGAGAGCCAAA
GAGCATACCGATTTGTGCAGGGAAAAGACTGGGGTTTCAAGAAGTTCATT
AGGAGAGATTTTCTGATGGATGAAGCTAATGGTTTACTACCTGAAGATAA
GTTAACTATGTTTTGCGAGGTTAGTGTTGTTGCCGACTCGGTGAATGTCT
CCGGCCAATCGCTGATGTCCAATTTGAAAGTACCTGACTCAGAACTGGCT
GATAACATGAACAATTTATTAGACACTGGTAATTTCAGTGACATGgcttt
gaaaaataataacatgACAATACCGGTACATAAAGCGATATTAGCTGCAC
GATCACCGGTTTTCGCTGCCATGTTTCAACACGATTTGGAGGAGAATAAA
CAGGGTTTTGTGTCCATCACTGATTTAGATATAGACGTTTTACGTGAAAT
GTTGAAATTTATTTATACGGGGAAAGTGACGAGACTGGATGCGATGGCTG
ATTCCTTGCTCGCTGCTGCAGATAAGTATGCACTGGACCGGTTGAAAGTG
ATGTGCGAGGAAGCTTTAGCATCTAACTTGAACGTGGACAATGTTTGTGA
TGTCTTGGTGTTGGCTGACCTTCACAATGCTCAACAACTCAAATCTGTTG
CCATTGACTTCACTAACAGTCATGCGCAGGAAGTCATGGAACATTCTTCA
TGGCAGAAATTGGTGAAGAATCATGCTAACATCATTGCAGAAGCATTTAG
AGCTCTCGCCAGTGTCCAAAGTTTCTCCTGCTCACCACCAAGGAAAAGAC
AGAAAACAGCTCGTGTGGAACCGTGTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002843XLOC_002843Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005015-proteinTCONS_00005015-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005015-exon-sc0000050-1491911889:795188..795563TCONS_00005015-exon-sc0000050-1491911889:795188..795563Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1510915933:795188..795563TCONS_00005015-exon-sc0000050-1510915933:795188..795563Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1575043694:795188..795563TCONS_00005015-exon-sc0000050-1575043694:795188..795563Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1491911889:796086..796237TCONS_00005015-exon-sc0000050-1491911889:796086..796237Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1510915933:796086..796237TCONS_00005015-exon-sc0000050-1510915933:796086..796237Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1575043694:796086..796237TCONS_00005015-exon-sc0000050-1575043694:796086..796237Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1491911889:796529..796656TCONS_00005015-exon-sc0000050-1491911889:796529..796656Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1510915933:796529..796656TCONS_00005015-exon-sc0000050-1510915933:796529..796656Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1575043694:796529..796656TCONS_00005015-exon-sc0000050-1575043694:796529..796656Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1491911889:798420..798776TCONS_00005015-exon-sc0000050-1491911889:798420..798776Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1510915933:798420..798776TCONS_00005015-exon-sc0000050-1510915933:798420..798776Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1575043694:798420..798776TCONS_00005015-exon-sc0000050-1575043694:798420..798776Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1491911889:799149..799291TCONS_00005015-exon-sc0000050-1491911889:799149..799291Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1510915933:799149..799291TCONS_00005015-exon-sc0000050-1510915933:799149..799291Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1575043694:799149..799291TCONS_00005015-exon-sc0000050-1575043694:799149..799291Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1491911889:799648..801058TCONS_00005015-exon-sc0000050-1491911889:799648..801058Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1510915933:799648..801058TCONS_00005015-exon-sc0000050-1510915933:799648..801058Clytia hemisphaericaexon
TCONS_00005015-exon-sc0000050-1575043694:799648..801058TCONS_00005015-exon-sc0000050-1575043694:799648..801058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:795188..801058 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.42588	3.13405	0.827086	0.819795	35.3282	26.2567	24.009	26.6037	21.3957	19.1186	18.0679	13.6247	9.48686	9.28268	9.08399	9.77966	14.0996	14.4792	5.8906	6.97741	16.84	15.5953	10.6403	11.943	11.8042	12.3568	12.2155	7.75927	8.62027	9.72305
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
IPR034089SPOP_C
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00005015 vs. Swiss-Prot (Human)
Match: SPOP (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 5.200e-153
Identity = 247/359 (68.80%), Postives = 298/359 (83.01%), Query Frame = 3 
Query:  222 APVAENWCYTHVKVVKFSYMWTINNFSYCREEMGETLKSSTFSAGANDKLKWCLRINPKGLDEESKDXXXXXXXXXACNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLMDEANGLLPEDKLTMFCEVSVVADSVNVSGQSLMSNLKVPDSELADNMNNLLDTGNFSDMALKNNNMTIPVHKAILAARSPVFAAMFQHDLEENKQGFVSITDLDIDVLREMLKFIYTGKVTRXXXXXXXXXXXXXKYALDRLKVMCEEALASXXXXXXXXXXXXXXXXHNAQQLKSVAIDFTNSHAQEVMEHSSWQKLVKNHANIIAEAFRALASVQSFSCSPPRKRQKTA 1298
             PVAE+WCYT +KVVKFSYMWTINNFS+CREEMGE +KSSTFS+GANDKLKWCLR+NPKGLDEESKDYLSLYLLL++C KSEVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFL+DEANGLLP+DKLT+FCEVSVV DSVN+SGQ+ M+ +KVP+  LAD +  L +   F+D  L         HKAILAARSPVF+AMF+H++EE+K+  V I D++ +V +EM+ FIYTGK   LD MAD LLAAADKYAL+RLKVMCE+AL SNL+V+N  ++L+LADLH+A QLK+ A+DF N HA +V+E S W+ +V +H +++AEA+R+LAS Q     PPRKR K +
Sbjct:   16 GPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS 374
The following BLAST results are available for this feature:
BLAST of TCONS_00005015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPOP5.200e-15368.80Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
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