TCONS_00005011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005011
Unique NameTCONS_00005011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005011 ID=TCONS_00005011|Name=TCONS_00005011|organism=Clytia hemisphaerica|type=transcript|length=786bp
agacatttgaAAAAGTCTATTTGAAAGCTACACACAGCGTCTCTGATAAA
CAAAATTTCAATAACAGACAAAGTTGACAGTTGACAAAAGTTTAAAAGAC
ATGCCCAAATGACTTTTGAAATTAATAACACAAGTTATGAATAAAGCTTG
ACGTTTACCTCACTAAGACCTAAGACAGTCAGTGAATCATAATGCTATAC
TAACCTATGTATGTTATAATAAACAGAAAATCTTTAGGGGTTTGCTAAgg
gaatttcaagaaaaataccTTACTgtaaggaagaaattttgacggaaaga
aaatttggtggaATCGGTCAAAATCTGCCAAAATTAATTTATCTCtgcca
ttcgccaaattaaattcccaccaaatttaaGTTACTGCATTTATTCCCCC
AAACGTGTGCTATTTTAGGCAGTAAATTCCTgccaatttcaactttttaa
gcCAACCATCAAATCAAATTCCCTCTGAGacatttttcaggggggggggg
ctaaggaaaatagcccccggctaaattctagaaacatgGCCCCCGCCTgc
acaaagcaaaatatcaaagaaataatGAATTTATTGTACTGCaggcaaaa
aactttttcaagagggttaaaaccttccccacagcatagacttttaacat
aatttaaaatatatgTTACCTATCATCTTtgcccccagttctattacaca
acaaTCAGCCCCtcctagcaagctagcccccagtattttttgaaaaatac
agcccccaatcaagcaaaaatggtttagcccccccc
Run BLAST on NCBI

transcript from alignment at sc0000050:617521..619208+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005011 ID=TCONS_00005011|Name=TCONS_00005011|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at sc0000050:617521..619208+ (Clytia hemisphaerica)
agacatttgaAAAAGTCTATTTGAAAGCTACACACAGCGTCTCTGATAAA
CAAAATTTCAATAACAGACAAAGTTGACAGTTGACAAAAGTTTAAAAGAC
ATGCCCAAATGACTTTTGAAATTAATAACATAAGCTATGAATAAAGCTTG
ACGTTTTTACCTCACTAAGACCTAAGACAGTCAGTGAATCATAATGCTAT
ACTAACCTATGTATGTTATAAACAGAAAATCTTTAGGGGTTTGCTAAggg
aatttgaagaaaaataccTTACTGTACTgtaaggaagaaattttgacgga
aagaaaatttggtggaattggtcaaaatctgccaaaattaatttttctct
GCCATTCGCCatattaaattcccaccaaatttaaGTTACTGCATTTATTC
CCCCAAACGTGTGCTACTTtaggccttaaaacaggttaaatttctgccaa
atttaactttttaagcCGATCATCAAATCAAATTCACTCTGagacatagt
gtgcagaggggtccagccccagcatttttcaggggggggggggggNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcccccccccctgtatgctaaaaattgaaaacctaAATCAACGTTTAC
ATTATTGTAAAAGAACGTCAGAATTTTcgagttttaaacaaaaacaaaat
gaagacatttgaAAAAGTCTATTTGAAAGCTACACACAGCGTCTCTGATA
AACAAAATTTCAATAACAGACAAAGTTGACAGTTGACAAAAGTTTAAAGG
ACATGCCCAAATGACTTTTGAAATTAATAACACAAGTTATGAATAAAGCT
TGACGTTTACCTCACTAAGACCTAAGACAGTCAGTGAATCATAATGCTAT
ACTAACCTATGTATGTTATAATAAACAGAAAATCTTTAGGGGTTTGCTAA
gggaatttcaagaaaaataccTTACTgtaaggaagaaattttgacggaaa
gaaaatttggtggaATCGGTCAAAATCTGCCAAAATTAATTTATCTCtgc
cattcgccaaattaaattcccaccaaatttaaGTTACTGCATTTATTCCC
CCAAACGTGTGCTATTTTAGGCAGTAAATTCCTgccaatttcaacttttt
aagcCAACCATCAAATCAAATTCCCTCTGAGacatttttcaggggggggg
ggctaaggaaaatagcccccggctaaattctagaaacatgGCCCCCGCCT
gcacaaagcaaaatatcaaagaaataatGAATTTATTGTACTGCaggcaa
aaaactttttcaagagggttaaaaccttccccacagcatagacttttaac
ataatttaaaatatatgTTACCTATCATCTTtgcccccagttctattaca
caacaaTCAGCCCCtcctagcaagctagcccccagtattttttgaaaaat
acagcccccaatcaagcaaaaatggtttagcccccccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002840XLOC_002840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005011-exon-sc0000050-1491911889:617521..617649TCONS_00005011-exon-sc0000050-1491911889:617521..617649Clytia hemisphaericaexon
TCONS_00005011-exon-sc0000050-1510915933:617521..617649TCONS_00005011-exon-sc0000050-1510915933:617521..617649Clytia hemisphaericaexon
TCONS_00005011-exon-sc0000050-1575043694:617521..617649TCONS_00005011-exon-sc0000050-1575043694:617521..617649Clytia hemisphaericaexon
TCONS_00005011-exon-sc0000050-1491911889:618552..619208TCONS_00005011-exon-sc0000050-1491911889:618552..619208Clytia hemisphaericaexon
TCONS_00005011-exon-sc0000050-1510915933:618552..619208TCONS_00005011-exon-sc0000050-1510915933:618552..619208Clytia hemisphaericaexon
TCONS_00005011-exon-sc0000050-1575043694:618552..619208TCONS_00005011-exon-sc0000050-1575043694:618552..619208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:617521..619208 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.335588	0.198807	0.926363	1.0057	0.912099	0.720753	1.26481	1.99817	0.678604	0.582783	1.1309	0.577834	0.573699	0.935397	0.787745	0.337214	0.507735	0.61672	0.42851	0.71424	1.13213	1.40036	0.361259	0.387053	0.660154	1.00159	1.19234	1.21893	0.987644	0.560994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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