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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005005 ID=TCONS_00005005|Name=TCONS_00005005|organism=Clytia hemisphaerica|type=transcript|length=1722bp
CTcttagaatttcattttcaaatgtaTTGACTTTTTCTGCTGTTGGTTAT
TTCTTTCATGTGAACCTTGGTTAGAGGTCATAAGATATGGTACATGGTAT
GATAGTGTGAATCTTTACGAGTATTTGGAGAATCAAGAAGCAAAATCAGA
ACAAACTTTCCAACTGAATGAGCAACTGAAAATTACTGTGAATTAGAAAC
AGAAGTATCCATAGACTTTGATCTTGAAACGTTATGAAGAAGCGAGACCT
TTGATTTCAGAACACATTAAATTGAAAGATAATGGTGGGATAGTTTCGTG
CAACAACAAGAATAATAAGAGAATTGTTGAATTGTTGAAgtataaaaaaa
gtaaagaagaTGAAGACATTTAGAGAGCAatataatttttggaatttcat
gTTTCAACATCAACCGACAACTGATTTCTACTACGCACAGTGTCCATGCA
TCCATCCGTTATCAGTGGTTGGTTACCGTTTCTTCTGTGCTGTTTACTGC
ATCTTCTTTTGGACATTGAGTTTGGGATTCTCCATTCTTGATCACAATGG
ATACAGATGGTTTAAATTGTACTCCTCGTGGGTGTACATGATTGCGACGT
TCTTCTTTTCGTATGCCTTTTTCATCAGTTTCTTGGAAGTTTGTAAAGTA
TGTAAATTCAATGATTCCAAGAAACAAAGACGGAAAGATAGATACAAAAA
TCAAGAACCAGTGGAAGAAATCCCAGCAGAAGGGCGTTTCAGAAGCAACC
AAAAGCTGTACGATGATATCGAACTAGATCAACCATCAGTCAGCAGCCGT
CAACCATCAAACGAAGATATTGCTACAAATGACGGAGTTGATATTGAGGA
GCCGTTACCATGGCGATTCCAAATCTTATGGTTCCTTGAGAATCTGGTCA
TGGTTAATAGCATTACGTCAACAATCGCTTACTGGATTTTCATTCGTGAT
TCATCAGAGAATCTTACGTTTAACAATATCCGAAGTTATTTTATTATCGA
TCGACATGGGATCGTCACCTTTTTCTTATTAGTTGAATTCCTACTAAATA
AAATCCCGTGGcgcatttttcattttatctacCCGTTAGCTTTTGGTATC
TCCTACTTAATTTTCCACCTGATCAACTGGTATTATACTAGAGATAACAT
TTATAAATTCCTGGATTGGAAAGATCATATTGGACATTCGATTCTATATT
TCACTGGTGCATTTGTATGCATTATCGTTCTGCAGTTTCTGCTTTTCTTG
GTATACAGGAAAAAACGCCAGTGATTAACTTCTGGATGGCTTGAGGCTTG
CTTTTTGTGATCCTTATCATTAAATTCATAGAAATACTAAAATTGATGAA
AGATGGTCTTTCACGAAATGACTTGATTAAGACCGCTTAATGATTCCTGG
ATTCCAAAAGACTGGAGTTTAAAGCTCAAAATGtaaaaaactgaagaaag
ctATCGATTTGCCGTATACTTTTAATACAAACTTTTGTGAAGCAAAAACT
ATTGTGAAACGATTGTCAAACTGAGCCAAGAATAGTGAATTTCGAAAGGA
ACGTCacgataaatattttttatgtatAGACTTTTTGTGACAATGCCGTT
GCTATGGGTAACCAAGGGCTTAAATATTACCTCTCTATGTAAAATTCCAG
AGCTAAGGAATTATTTATAGTGTTTACATGTCTGTTTGAGCTAAACCTTT
ACATTAGCGGGTTTACtatcgg Run BLAST on NCBI protein sequence of TCONS_00005005-protein >TCONS_00005005-protein ID=TCONS_00005005-protein|Name=TCONS_00005005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MKTFREQYNFWNFMFQHQPTTDFYYAQCPCIHPLSVVGYRFFCAVYCIFF
WTLSLGFSILDHNGYRWFKLYSSWVYMIATFFFSYAFFISFLEVCKVCKF
NDSKKQRRKDRYKNQEPVEEIPAEGRFRSNQKLYDDIELDQPSVSSRQPS
NEDIATNDGVDIEEPLPWRFQILWFLENLVMVNSITSTIAYWIFIRDSSE
NLTFNNIRSYFIIDRHGIVTFFLLVEFLLNKIPWRIFHFIYPLAFGISYL
IFHLINWYYTRDNIYKFLDWKDHIGHSILYFTGAFVCIIVLQFLLFLVYR
KKRQ Run BLAST on NCBI transcript from alignment at sc0000050:488629..493267+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005005 ID=TCONS_00005005|Name=TCONS_00005005|organism=Clytia hemisphaerica|type=transcript|length=4639bp|location=Sequence derived from alignment at sc0000050:488629..493267+ (Clytia hemisphaerica)
CTcttagaatttcattttcaaatgtaTTGACTTTTTCTGCTGTTGGTTAT
TTCTTTCATGTGAACCTTGGTTAGAGGTCATAAGATATGGTACATGGTAT
GATAGTGTGAATCTTTACGAGTATTTGGAGAATCAAGAAGCAAAATCAGA
ACAAACTTTCCAACTGAATGAGCAACTGAAAATTACTGTGAATTAGAAAC
AGAAGTATCCATAGACTTTGATCTTGAAACGTTATGAAGAAGCGAGACCT
TTGATTTCAGAACACATTAAATTGAAAGATAATGGTGGGATAGTTTCGTG
CAACAACAAGAATAATAAGAGAATTGTTGAATTGTTGAAgtataaaaaaa
gtaaagaagaTGAAGACATTTAGAGAGCAatataatttttggaatttcat
gTTTCAACATCAACCGACAACTGATTTCTACTACGCACAGGTGAGTTGAT
AAACGAGGGTACTTCCCCGGGGGGAaaactcgatctgaaaacgaccatac
gttcggcccaaaatttggcttctaaaatcggacccttacagtgcagtgaa
tttccatgaaaaatcatacccttacagtgcactttttcaaaatttctcca
attttgaaaatttttgcaatttttcaagaaaatgtggaatttttcctcca
aaattgaccaattttgtgccaatttttccaaaaaattggccttttatcac
aatttcctacccttacagtgcagttcagtgcagttttgtaatttcctacc
cttacagtgcactagctgaactatgaaaaacctacccttaagggccgaac
gtctggtaggtcatttaccttgagtgcccccccccgggggtacTTCTCTC
TCACAGCCTCAACATCTTAAGCCTTACAATTcactaggctacgtcatatc
ttccttcgtttcgagtgTAAAGCTCCTACTCTTcaggatatgagcactgc
tctcaTTTATATAGTGAAATTCTCCGGatacatcgcatgcgcactgaggt
tttaatgaaacaatagagattTTCGAAACCTAGGCCAAtaagctgtgttt
taaacattcttttatttgaaatctcttatGATAAACATCAATAAAAcaac
aatataatttttcaaaattttgatgacgtcagcagaaaataggatttttc
gttttttactaatttctgctgacgtcatcaaaattttgaaacaatttttt
tttcaaatgatcgactttagtaagatacatccttggtgaaagtttgaaga
caattggataaaccattcttgagaaatttaatttttagttttagtgacgt
catcgattattacgtaataatcggtttttgcggtttttcgcgaaaatcag
cgaaaaagcaattaggttacacatcaggttagaaactacatcatagtacc
cttcgagttcagtcatttgtttggtcattttctgtcgactaatgcgatct
aaaaattatggtaattttcagtttttgaggcatgccataacttacccgag
actAGAATACCTACCACCGGTGTTCATTTTACTACCTACCGGTTTACACT
GGTGTTTTGCTTCTTCCCTTCCAACCAGTGCTTCCACCGNCgccactaat
tttgaatttaaacaataataCAAGTGGCTAACGCCCAGGCTATTTTGGTT
ACTTCCGTatgaaacattacgtcatgaaaatcaaaatcatatttttatGA
CACGGtaattggtccagcgcgcagcagaatggacctttaaaaagcaactg
atcgaaaagattttgtctttgtcggggcctgtgcgcgcaataaatcaaca
agtccaggctaaacccgcgcgatgtttgacctatgttttggattgaattg
gtagtagagtcaaatttctcggttagattaaagggttgtttcaggtaggg
tcaggtagtgttagggctagggttggggatgggagttaacccctggttag
ggtttaagctcccgggtagagtttggagtaaataccatgtttataaggaa
ctttgaactccttaatgcagttgtgactcgatgaccgagtggttaaggcg
ctggcgttcGAATCATATagttcgaatcccatcagcggcaaaagtttcga
aatttcgggaaatgcatcaaaaactttcaaaacttagcaatacaaagaaa
gtgtcaaagattagaagctcagagtggaggatgggaaggaattttttttt
gcgtcacttaaggagcccggtacgaacgacattcggttattgccacgtca
gctggaccttcacgccgcttcggcttcttgttattttttgtccgtgtcat
aaaaatctgctctccaacCAAATTTTACGTCATGACATGACATTACGTTt
catgaattcatgatattcatgacgtaatgttttctacggaaataccccag
ttttagccagtagtggcaaatttaagctAGACAAAAGTTACCACTACTGC
CAAAAACCGAgatctttccgtagaaaacagtacgtcatgaatatcatgaa
ttggatTCTTCACATTCCCCCTGATTTTTTCTTAGTGTCCATGCATCCAT
CCGTTATCAGTGGTTGGTTACCGTTTCTTCTGTGCTGTTTACTGCATCTT
CTTTTGGACATTGAGTTTGGGATTCTCCATTCTTGATCACAATGGATACA
GATGGTTTAAATTGTACTCCTCGTGGGTGTACATGATTGCGACGTTCTTC
TTTTCGTATGCCTTTTTCATCAGTTTCTTGGAAGTTTGTAAAGTATGTAA
ATTCAATGATTCCAAGAAACAAAGACGGAAAGATAGGTAATTACTTTTTA
TTTGTCATTAATCGATCTGATGGTTTGTCCAGTGTTGTTGGGGACCACTA
AAGACCAAGTGCCACTTTTGATTAAACGTTCataattatttcattatttc
ataATGACACCCGTGGTCAGTAAACTAGAGAAAGAGTTTATGGCCCAACA
AGCTATTTTATAAATTACAACCAAGAAATCTATAATTCCGATTAAGACCA
CGATACTAAGATGAAAGAACCCCTACTTCAAATCGGACATACATTGATTC
AGACTTGTTTTTTCCAAAACGGGTTTTAAATAATATGTTACGTTACTGCA
CCACGTCACCAAGTCAAAAAAACTAAATCTGAGGGGCATACAAAATAGAA
AGCTCCAGTCTCTAGCTATAGGAAAGATTAGTCTACGGCcaagatacacg
ctttttttaataagaatacactttataagaatgtccatgatgaaaatggc
caaaaaattaagaataatgctaagaatatcaccatcgtgAAATTTtacta
ctcaagctaagaatgccatttttagagcattttcaattagaAGTTGTCAA
TTACCCCTTAAGTAAGGCCATTTTATGTTTAAGTCGTATGTACTAAATTC
TAATGTCCAATTAGTATCctaaacctaagaatgctgtagaagaatatttt
aggatgattttcccaaaaaagttaagaatgtccatgataaaatggattta
catcattcttataaaaaaagcgtgtattttctGCAACACTATAAAATAAA
CAATGGGTCATTACTTCCTTTTTGCAGATACAAAAATCAAGAACCAGTGG
AAGAAATCCCAGCAGAAGGGCGTTTCAGAAGCAACCAAAAGCTGTACGAT
GATATCGAACTAGATCAACCATCAGTCAGCAGCCGTCAACCATCAAACGA
AGATATTGCTACAAATGACGGAGTTGATATTGAGGAGCCGTTACCATGGC
GATTCCAAATCTTATGGTTCCTTGAGAATCTGGTCATGGTTAATAGCATT
ACGTCAACAATCGCTTACTGGATTTTCATTCGTGATTCATCAGAGAATCT
TACGTTTAACAATATCCGAAGTTATTTTATTATCGATCGACATGGGATCG
TCACCTTTTTCTTATTAGTTGAATTCCTACTAAATAAAATCCCGTGGcgc
atttttcattttatctacCCGTTAGCTTTTGGTATCTCCTACTTAATTTT
CCACCTGATCAACTGGTATTATACTAGAGATAACATTTATAAATTCCTGG
ATTGGAAAGATCATATTGGACATTCGATTCTATATTTCACTGGTGCATTT
GTATGCATTATCGTTCTGCAGTTTCTGCTTTTCTTGGTATACAGGAAAAA
ACGCCAGTGATTAACTTCTGGATGGCTTGAGGCTTGCTTTTTGTGATCCT
TATCATTAAATTCATAGAAATACTAAAATTGATGAAAGATGGTCTTTCAC
GAAATGTTGTCCACGCATAAACTTATCCAAATCAAGGACTTGATTAAGAC
CGCTTAATGATTCCTGGATTCCAAAAGACTGGAGTTTAAAGCTCAAAATG
taaaaaactgaagaaagctATCGATTTGCCGTATACTTTTAATACAAACT
TTTGTGAAGCAAAAACTATTGTGAAACGATTGTCAAACTGAGCCAAGAAT
AGTGAATTTCGAAAGGAACGTCacgataaatattttttatgtatAGACTT
TTTGTGACAATGCCGTTGCTATGGGTAACCAAGGGCTTAAATATTACCTC
TCTATGTAAAATTCCAGAGCTAAGGAATTATTTATAGTGTTTACATGTCT
GTTTGAGCTAAACCTTTACATTAGCGGGTTTACtatcgg Coding sequence (CDS) from alignment at sc0000050:488629..493267+ >TCONS_00005005 ID=TCONS_00005005|Name=TCONS_00005005|organism=Clytia hemisphaerica|type=CDS|length=2745bp|location=Sequence derived from alignment at sc0000050:488629..493267+ (Clytia hemisphaerica)
aTGAAGACATTTAGAGAGCAatataatttttggaatttcatgTTTCAACA
TCAACCGACAACTGATTTCTACTACGCACAGTGTCCATGCATCCATCCGT
TATCAGTGGTTGGTTACCGTTTCTTCTGTGCTGTTTACTGCATCTTCTTT
TGGACATTGAGTTTGGGATTCTCCATTCTTGATCACAATGGATACAGATG
GTTTAAATTGTACTCCTCGTGGGTGTACATGATTGCGACGTTCTTCTTTT
CGTATGCCTTTTTCATCAGTTTCTTGGAAGTTTGTAAAGTATGTAAATTC
AATGATTCCAAGAAACAAAGACGGAAAGATAGATACAAAAATCAAGAACC
AGTGGAAGAAATCCCAGCAGAAGGGCGTTTCAGAAGCAACCAAAAGCTGT
ACGATGATATCGAACTAGATCAACCATCAGTCAGCAGCCGTCAACCATCA
AACGAAGATATTGCTACAAATGACGGAGTTGATATTGAGGAGCCGTTACC
ATGGCGATTCCAAATCTTATGGTTCCTTGAGAATCTGGTCATGGTTAATA
GCATTACGTCAACAATCGCTTACTGGATTTTCATTCGTGATTCATCAGAG
AATCTTACGTTTAACAATATCCGAAGTTATTTTATTATCGATCGACATGG
GATCGTCACCTTTTTCTTATTAGTTGAATTCCTACTAAATAAAATCCCGT
GGcgcatttttcattttatctacCCGTTAGCTTTTGGTATCTCCTACTTA
ATTTTCCACCTGATCAACTGGTATTATACTAGAGATAACATTTATAAATT
CCTGGATTGGAAAGATCATATTGGACATTCGATTCTATATTTCACTGGTG
CATTTGTATGCATTATCGTTCTGCAGTTTCTGCTTTTCTTGGTATACAGG
AAAAAACGCCAGTGAaTGAAGACATTTAGAGAGCAatataatttttggaa
tttcatgTTTCAACATCAACCGACAACTGATTTCTACTACGCACAGTGTC
CATGCATCCATCCGTTATCAGTGGTTGGTTACCGTTTCTTCTGTGCTGTT
TACTGCATCTTCTTTTGGACATTGAGTTTGGGATTCTCCATTCTTGATCA
CAATGGATACAGATGGTTTAAATTGTACTCCTCGTGGGTGTACATGATTG
CGACGTTCTTCTTTTCGTATGCCTTTTTCATCAGTTTCTTGGAAGTTTGT
AAAGTATGTAAATTCAATGATTCCAAGAAACAAAGACGGAAAGATAGATA
CAAAAATCAAGAACCAGTGGAAGAAATCCCAGCAGAAGGGCGTTTCAGAA
GCAACCAAAAGCTGTACGATGATATCGAACTAGATCAACCATCAGTCAGC
AGCCGTCAACCATCAAACGAAGATATTGCTACAAATGACGGAGTTGATAT
TGAGGAGCCGTTACCATGGCGATTCCAAATCTTATGGTTCCTTGAGAATC
TGGTCATGGTTAATAGCATTACGTCAACAATCGCTTACTGGATTTTCATT
CGTGATTCATCAGAGAATCTTACGTTTAACAATATCCGAAGTTATTTTAT
TATCGATCGACATGGGATCGTCACCTTTTTCTTATTAGTTGAATTCCTAC
TAAATAAAATCCCGTGGcgcatttttcattttatctacCCGTTAGCTTTT
GGTATCTCCTACTTAATTTTCCACCTGATCAACTGGTATTATACTAGAGA
TAACATTTATAAATTCCTGGATTGGAAAGATCATATTGGACATTCGATTC
TATATTTCACTGGTGCATTTGTATGCATTATCGTTCTGCAGTTTCTGCTT
TTCTTGGTATACAGGAAAAAACGCCAGTGAaTGAAGACATTTAGAGAGCA
atataatttttggaatttcatgTTTCAACATCAACCGACAACTGATTTCT
ACTACGCACAGTGTCCATGCATCCATCCGTTATCAGTGGTTGGTTACCGT
TTCTTCTGTGCTGTTTACTGCATCTTCTTTTGGACATTGAGTTTGGGATT
CTCCATTCTTGATCACAATGGATACAGATGGTTTAAATTGTACTCCTCGT
GGGTGTACATGATTGCGACGTTCTTCTTTTCGTATGCCTTTTTCATCAGT
TTCTTGGAAGTTTGTAAAGTATGTAAATTCAATGATTCCAAGAAACAAAG
ACGGAAAGATAGATACAAAAATCAAGAACCAGTGGAAGAAATCCCAGCAG
AAGGGCGTTTCAGAAGCAACCAAAAGCTGTACGATGATATCGAACTAGAT
CAACCATCAGTCAGCAGCCGTCAACCATCAAACGAAGATATTGCTACAAA
TGACGGAGTTGATATTGAGGAGCCGTTACCATGGCGATTCCAAATCTTAT
GGTTCCTTGAGAATCTGGTCATGGTTAATAGCATTACGTCAACAATCGCT
TACTGGATTTTCATTCGTGATTCATCAGAGAATCTTACGTTTAACAATAT
CCGAAGTTATTTTATTATCGATCGACATGGGATCGTCACCTTTTTCTTAT
TAGTTGAATTCCTACTAAATAAAATCCCGTGGcgcatttttcattttatc
tacCCGTTAGCTTTTGGTATCTCCTACTTAATTTTCCACCTGATCAACTG
GTATTATACTAGAGATAACATTTATAAATTCCTGGATTGGAAAGATCATA
TTGGACATTCGATTCTATATTTCACTGGTGCATTTGTATGCATTATCGTT
CTGCAGTTTCTGCTTTTCTTGGTATACAGGAAAAAACGCCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005005-exon-sc0000050-1491911889:488629..489068 | TCONS_00005005-exon-sc0000050-1491911889:488629..489068 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1510915933:488629..489068 | TCONS_00005005-exon-sc0000050-1510915933:488629..489068 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1575043694:488629..489068 | TCONS_00005005-exon-sc0000050-1575043694:488629..489068 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1491911889:491164..491414 | TCONS_00005005-exon-sc0000050-1491911889:491164..491414 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1510915933:491164..491414 | TCONS_00005005-exon-sc0000050-1510915933:491164..491414 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1575043694:491164..491414 | TCONS_00005005-exon-sc0000050-1575043694:491164..491414 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1491911889:492206..492883 | TCONS_00005005-exon-sc0000050-1491911889:492206..492883 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1510915933:492206..492883 | TCONS_00005005-exon-sc0000050-1510915933:492206..492883 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1575043694:492206..492883 | TCONS_00005005-exon-sc0000050-1575043694:492206..492883 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1491911889:492915..493267 | TCONS_00005005-exon-sc0000050-1491911889:492915..493267 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1510915933:492915..493267 | TCONS_00005005-exon-sc0000050-1510915933:492915..493267 | Clytia hemisphaerica | exon |
| TCONS_00005005-exon-sc0000050-1575043694:492915..493267 | TCONS_00005005-exon-sc0000050-1575043694:492915..493267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:488629..493267 + |
Blast
The following BLAST results are available for this feature:
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