Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005001 ID=TCONS_00005001|Name=TCONS_00005001|organism=Clytia hemisphaerica|type=transcript|length=2960bpRun BLAST on NCBI protein sequence of TCONS_00005001-protein >TCONS_00005001-protein ID=TCONS_00005001-protein|Name=TCONS_00005001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MLHNNQVLLVFMGLCFFWFVNCNRPKLNSTTKETKEEKIDREEIFLAQNFRun BLAST on NCBI transcript from alignment at sc0000050:469602..477751+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005001 ID=TCONS_00005001|Name=TCONS_00005001|organism=Clytia hemisphaerica|type=transcript|length=8150bp|location=Sequence derived from alignment at sc0000050:469602..477751+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000050:469602..477751+ >TCONS_00005001 ID=TCONS_00005001|Name=TCONS_00005001|organism=Clytia hemisphaerica|type=CDS|length=12555bp|location=Sequence derived from alignment at sc0000050:469602..477751+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005001 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2) HSP 1 Score: 221.09 bits (562), Expect = 1.877e-62 Identity = 139/423 (32.86%), Postives = 221/423 (52.25%), Query Frame = 2 Query: 260 LNQYDKNIRPNYTGKPIVVTVDLTVMAFGAINERGMTFATDLYFRQTWQDYRLQHKAGTVLTPLL-GRKIPTDFIWTPDTVISNSVKTRKHKVTTNNEKLDIYPNGTVFWGSRITVISKCKMDFRNYPMDIQSCSLVINSYAYLKEHLEYKWKQDKVSIQSEE---MAQYTVKSAYNLRRNANFSDLGTFSELVVTFTFARQISVTIIQLFFPATAIVSVSWVSLWIHKNCVSARVALCVTTMLTICAFWGSVNRQLPRVNYPKAVDYYFIVSFLFIMLTLVEFTIVLNFDFDSLKTKSVKKQSGKDTLKRENSLRNQLPKHTHHVLRRKISRLDANVLQGDLVCEIDN----TGR-----TVHYSLAKKEQWKKPKVDKNKMPYFFKYYPVTGKPATLDVIARFLFPFVYFCFNVIFWKTYS 1489 ++ +D ++RP + G I V VD+ V + +I+E M F LY R W+D RL + L+ GR + IW PD +S ++ H TT+N L + P+G V + R+TV + C MDF +P+D Q+CSL I SYAY ++ L WK+ S++++E ++Q+ ++ + + A +S G ++ L + FT R I ++Q +FPAT +V +SWVS WI + V ARV L +TT+LT+ VN +PRV+Y KAVD Y VSF+F+ L+++E+ V + L T +K E LR +LP T + + + LD N G+ V ++DN G V +LA + + K ++ Y + +D +R +FP Y FN+I+W +S Sbjct: 81 IDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSMTFDGRLVKK--IWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAV-----NYLTTVQERK---------EQKLREKLP-CTSGLPPPRTAMLDGNYSDGE-VNDLDNYMPENGEKPDRMMVQLTLASERSSPQRKSQRS------SYVSMRIDTHAIDKYSRIIFPAAYILFNLIYWSIFS 479 The following BLAST results are available for this feature:
BLAST of TCONS_00005001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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