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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004973 ID=TCONS_00004973|Name=TCONS_00004973|organism=Clytia hemisphaerica|type=transcript|length=980bp
CCAACTTTCAAAGCAGGCTGTCTAAACTTCTTTCAAGCTAATATTTATAA
TACTTGTTTTTGATCCAGCCTTTTTTTCGAAATGAAGCAAAAATAATTCG
GGTTAGGAGAGCTGATTTGCGTAATGTTGAAATTCAAATCGTCATTTGGT
GAACTTAACTCTCCTTCGTTTGGTCTTAAAATTGCATTTAAATTCGTGGA
TTTTAATAAAGATTTCTCACTTTTGAGCAACAGTTACTTTTAACTTCTTG
CGATGAATACGTTACACGTTTTTCTCGCTGTTTGCGTTTTCGTCGTTGTA
ACTTGTCACGATGTCAACGATTTGCAAGGTGCTGTCAACGCCAAGTTCGA
TCAACTGAAAGAAAAGATTGGAGAAGAGCAACAAGACTTTAACAAGAAAA
TCCAACAAGGAAGCAACACAACAGATGCTACAAGCTGGAAAATCAAATTA
GGGAAATTATCCACAAAGATGAATCAAGCATTGGCTGAAGTGTGGGACAT
TTTTGATGATGAACATCAGGCGATCTCTGAACTCAAAAAGAATTTGTCTT
CTTTTCAAAGTCAACTGGTGGTCCTCAATGCTGACATTCGAAACGATTTC
CAGAAGAAGATCAATGAGTtggaaaacaaattcaaacaaGATTCACAACA
AATGAAAACACAACTCGAATTATCCTTCAAATCATCACTTCAAAATCAAG
CCAACGTcttccaaaacaaaatttccCAGCAAAACCAACAGATCAACAGA
CTATCATCTGAGGTTTCCAAACCGTCCACATGGCCTGCTGGAAGTTATTG
CATCTTCAGAAGTGGCTCTTGTCCTCCTGGGTTTGTGGCAAGAGGCGGCT
ACATCAATGCTATCCGAACATACTCGGCTGATAATCGATACATCAAAGCA
ATGACATTCGGTAATTCTCAAATCAAGTGTCATGGATCATGTGGTCAATA
TGGACCGTACGCTGAGCTTCACATTTACAC Run BLAST on NCBI protein sequence of TCONS_00004973-protein >TCONS_00004973-protein ID=TCONS_00004973-protein|Name=TCONS_00004973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MNTLHVFLAVCVFVVVTCHDVNDLQGAVNAKFDQLKEKIGEEQQDFNKKI
QQGSNTTDATSWKIKLGKLSTKMNQALAEVWDIFDDEHQAISELKKNLSS
FQSQLVVLNADIRNDFQKKINELENKFKQDSQQMKTQLELSFKSSLQNQA
NVFQNKISQQNQQINRLSSEVSKPSTWPAGSYCIFRSGSCPPGFVARGGY
INAIRTYSADNRYIKAMTFGNSQIKCHGSCGQYGPYAELHIY Run BLAST on NCBI transcript from alignment at sc0000049:763651..764630 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004973 ID=TCONS_00004973|Name=TCONS_00004973|organism=Clytia hemisphaerica|type=transcript|length=980bp|location=Sequence derived from alignment at sc0000049:763651..764630 (Clytia hemisphaerica)
GTGTAAATGTGAAGCTCAGCGTACGGTCCATATTGACCACATGATCCATG
ACACTTGATTTGAGAATTACCGAATGTCATTGCTTTGATGTATCGATTAT
CAGCCGAGTATGTTCGGATAGCATTGATGTAGCCGCCTCTTGCCACAAAC
CCAGGAGGACAAGAGCCACTTCTGAAGATGCAATAACTTCCAGCAGGCCA
TGTGGACGGTTTGGAAACCTCAGATGATAGTCTGTTGATCTGTTGGTTTT
GCTGggaaattttgttttggaagACGTTGGCTTGATTTTGAAGTGATGAT
TTGAAGGATAATTCGAGTTGTGTTTTCATTTGTTGTGAATCttgtttgaa
tttgttttccaACTCATTGATCTTCTTCTGGAAATCGTTTCGAATGTCAG
CATTGAGGACCACCAGTTGACTTTGAAAAGAAGACAAATTCTTTTTGAGT
TCAGAGATCGCCTGATGTTCATCATCAAAAATGTCCCACACTTCAGCCAA
TGCTTGATTCATCTTTGTGGATAATTTCCCTAATTTGATTTTCCAGCTTG
TAGCATCTGTTGTGTTGCTTCCTTGTTGGATTTTCTTGTTAAAGTCTTGT
TGCTCTTCTCCAATCTTTTCTTTCAGTTGATCGAACTTGGCGTTGACAGC
ACCTTGCAAATCGTTGACATCGTGACAAGTTACAACGACGAAAACGCAAA
CAGCGAGAAAAACGTGTAACGTATTCATCGCAAGAAGTTAAAAGTAACTG
TTGCTCAAAAGTGAGAAATCTTTATTAAAATCCACGAATTTAAATGCAAT
TTTAAGACCAAACGAAGGAGAGTTAAGTTCACCAAATGACGATTTGAATT
TCAACATTACGCAAATCAGCTCTCCTAACCCGAATTATTTTTGCTTCATT
TCGAAAAAAAGGCTGGATCAAAAACAAGTATTATAAATATTAGCTTGAAA
GAAGTTTAGACAGCCTGCTTTGAAAGTTGG Coding sequence (CDS) from alignment at sc0000049:763651..764630 >TCONS_00004973 ID=TCONS_00004973|Name=TCONS_00004973|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000049:763651..764630 (Clytia hemisphaerica)
GTAAATGTGAAGCTCAGCGTACGGTCCATATTGACCACATGATCCATGAC
ACTTGATTTGAGAATTACCGAATGTCATTGCTTTGATGTATCGATTATCA
GCCGAGTATGTTCGGATAGCATTGATGTAGCCGCCTCTTGCCACAAACCC
AGGAGGACAAGAGCCACTTCTGAAGATGCAATAACTTCCAGCAGGCCATG
TGGACGGTTTGGAAACCTCAGATGATAGTCTGTTGATCTGTTGGTTTTGC
TGggaaattttgttttggaagACGTTGGCTTGATTTTGAAGTGATGATTT
GAAGGATAATTCGAGTTGTGTTTTCATTTGTTGTGAATCttgtttgaatt
tgttttccaACTCATTGATCTTCTTCTGGAAATCGTTTCGAATGTCAGCA
TTGAGGACCACCAGTTGACTTTGAAAAGAAGACAAATTCTTTTTGAGTTC
AGAGATCGCCTGATGTTCATCATCAAAAATGTCCCACACTTCAGCCAATG
CTTGATTCATCTTTGTGGATAATTTCCCTAATTTGATTTTCCAGCTTGTA
GCATCTGTTGTGTTGCTTCCTTGTTGGATTTTCTTGTTAAAGTCTTGTTG
CTCTTCTCCAATCTTTTCTTTCAGTTGATCGAACTTGGCGTTGACAGCAC
CTTGCAAATCGTTGACATCGTGACAAGTTACAACGACGAAAACGCAAACA
GCGAGAAAAACGTGTAACGTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004973-exon-sc0000049-1491911889:763651..764630 | TCONS_00004973-exon-sc0000049-1491911889:763651..764630 | Clytia hemisphaerica | exon |
| TCONS_00004973-exon-sc0000049-1510915933:763651..764630 | TCONS_00004973-exon-sc0000049-1510915933:763651..764630 | Clytia hemisphaerica | exon |
| TCONS_00004973-exon-sc0000049-1575043694:763651..764630 | TCONS_00004973-exon-sc0000049-1575043694:763651..764630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:763651..764630 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031569 | ApeC |
Blast
The following BLAST results are available for this feature:
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