TCONS_00004968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004968
Unique NameTCONS_00004968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004968 ID=TCONS_00004968|Name=TCONS_00004968|organism=Clytia hemisphaerica|type=transcript|length=520bp
NNGGATTGAAGCCATCATGGGACCAATTCCACCTTCAAGTCTAACAGTTG
CTCCGGCATTTTATAACTCACAGATCGACCTCAGTGGACCATATCAATCA
TTATCACCTTCACACAAGCGAACAACAGTAAAAATATGGCTAGTTGTGTA
TTGTTGTTGTTCCACCTCTGCAATGATGATCAATGTCATGGACGACTATT
CTTCTTCAGCATTCATCCAAGCGTTTACTCGATTTTCCACGAGATATGGT
TTTCCAAAGAAAGTATTCTGCGACGAAGGATCACAGCTCGTCAAAGCTAC
AAAAGGCATGAAGTTGAACTACACTGATGTCAAATCAAGGATGTTCAAGG
AAAGAAGCGTGGAATTTCAAACATGTCCAGTTGGCGGACATAATGTCAAT
GGAAAGGTAGAGAGAAAGATCAAACACATCAATCTATCATTGGAAAAGAC
CTTCAACAATCAAAGACTTTCAATCCTACAATGGGAAACACTGACAGCCA
CCATTGCCAACACCTGCAAC
Run BLAST on NCBI

protein sequence of TCONS_00004968-protein

>TCONS_00004968-protein ID=TCONS_00004968-protein|Name=TCONS_00004968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
XIEAIMGPIPPSSLTVAPAFYNSQIDLSGPYQSLSPSHKRTTVKIWLVVY
CCCSTSAMMINVMDDYSSSAFIQAFTRFSTRYGFPKKVFCDEGSQLVKAT
KGMKLNYTDVKSRMFKERSVEFQTCPVGGHNVNGKVERKIKHINLSLEKT
FNNQRLSILQWETLTATIANTCN
Run BLAST on NCBI

transcript from alignment at sc0000049:677324..677843

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004968 ID=TCONS_00004968|Name=TCONS_00004968|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at sc0000049:677324..677843 (Clytia hemisphaerica)
GTTGCAGGTGTTGGCAATGGTGGCTGTCAGTGTTTCCCATTGTAGGATTG
AAAGTCTTTGATTGTTGAAGGTCTTTTCCAATGATAGATTGATGTGTTTG
ATCTTTCTCTCTACCTTTCCATTGACATTATGTCCGCCAACTGGACATGT
TTGAAATTCCACGCTTCTTTCCTTGAACATCCTTGATTTGACATCAGTGT
AGTTCAACTTCATGCCTTTTGTAGCTTTGACGAGCTGTGATCCTTCGTCG
CAGAATACTTTCTTTGGAAAACCATATCTCGTGGAAAATCGAGTAAACGC
TTGGATGAATGCTGAAGAAGAATAGTCGTCCATGACATTGATCATCATTG
CAGAGGTGGAACAACAACAATACACAACTAGCCATATTTTTACTGTTGTT
CGCTTGTGTGAAGGTGATAATGATTGATATGGTCCACTGAGGTCGATCTG
TGAGTTATAAAATGCCGGAGCAACTGTTAGACTTGAAGGTGGAATTGGTC
CCATGATGGCTTCAATCCNN

Coding sequence (CDS) from alignment at sc0000049:677324..677843

>TCONS_00004968 ID=TCONS_00004968|Name=TCONS_00004968|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000049:677324..677843 (Clytia hemisphaerica)
GTTGCAGGTGTTGGCAATGGTGGCTGTCAGTGTTTCCCATTGTAGGATTG
AAAGTCTTTGATTGTTGAAGGTCTTTTCCAATGATAGATTGATGTGTTTG
ATCTTTCTCTCTACCTTTCCATTGACATTATGTCCGCCAACTGGACATGT
TTGAAATTCCACGCTTCTTTCCTTGAACATCCTTGATTTGACATCAGTGT
AGTTCAACTTCATGCCTTTTGTAGCTTTGACGAGCTGTGATCCTTCGTCG
CAGAATACTTTCTTTGGAAAACCATATCTCGTGGAAAATCGAGTAAACGC
TTGGATGAATGCTGAAGAAGAATAGTCGTCCATGACATTGATCATCATTG
CAGAGGTGGAACAACAACAATACACAACTAGCCATATTTTTACTGTTGTT
CGCTTGTGTGAAGGTGATAATGATTGATATGGTCCACTGAGGTCGATCTG
TGAGTTATAAAATGCCGGAGCAACTGTTAGACTTGAAGGTGGAATTGGTC
CCATGATGGCTTCAATCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002816XLOC_002816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004968-exon-sc0000049-1491911889:677324..677843TCONS_00004968-exon-sc0000049-1491911889:677324..677843Clytia hemisphaericaexon
TCONS_00004968-exon-sc0000049-1510915933:677324..677843TCONS_00004968-exon-sc0000049-1510915933:677324..677843Clytia hemisphaericaexon
TCONS_00004968-exon-sc0000049-1575043694:677324..677843TCONS_00004968-exon-sc0000049-1575043694:677324..677843Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004968-proteinTCONS_00004968-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:677324..677843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.57963	3.69843	2.61928	1.8553	5.77698	3.5974	2.12929	3.99028	1.63138	3.07131	1.30662	3.24842	1.17776	0.866693	2.05631	1.38152	1.69245	2.68563	1.24536	2.70539	1.70462	1.35362	0.962229	2.48311	3.91932	3.06066	1.10919	1.10999	1.38344	0.483827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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