TCONS_00004964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004964
Unique NameTCONS_00004964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004964 ID=TCONS_00004964|Name=TCONS_00004964|organism=Clytia hemisphaerica|type=transcript|length=271bp
AAGAAATCAGTCCCAGATATCTATGTTCTGTCACAGGCCAAATGGAAgga
aattatttattattataaaaagaGCATTGCGTGTAAAGTGTACAAAATAT
ACAACAGTCTCAGCTCACCACTTTTATCGGAACTTATCAGCAAATCAAAT
ACACGTGGAaatagaaaatcttcaaaaattgacCAGGTAAAATTAACCTT
TGTTGATTATAAACGATCATTTATGTACAGAGCAGCTATTGTTTGGAATA
ACATTCCCAGCTCAATAcgag
Run BLAST on NCBI

transcript from alignment at sc0000049:584021..584291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004964 ID=TCONS_00004964|Name=TCONS_00004964|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0000049:584021..584291 (Clytia hemisphaerica)
ctcgTATTGAGCTGGGAATGTTATTCCAAACAATAGCTGCTCTGTACATA
AATGATCGTTTATAATCAACAAAGGTTAATTTTACCTGgtcaatttttga
agattttctattTCCACGTGTATTTGATTTGCTGATAAGTTCCGATAAAA
GTGGTGAGCTGAGACTGTTGTATATTTTGTACACTTTACACGCAATGCtc
tttttataataataaataatttccTTCCATTTGGCCTGTGACAGAACATA
GATATCTGGGACTGATTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002812XLOC_002812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004964-exon-sc0000049-1491911889:584021..584291TCONS_00004964-exon-sc0000049-1491911889:584021..584291Clytia hemisphaericaexon
TCONS_00004964-exon-sc0000049-1510915933:584021..584291TCONS_00004964-exon-sc0000049-1510915933:584021..584291Clytia hemisphaericaexon
TCONS_00004964-exon-sc0000049-1575043694:584021..584291TCONS_00004964-exon-sc0000049-1575043694:584021..584291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:584021..584291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27586	2.17952	0	3.09478	9.04223	4.16809	5.32637	1.13708	1.41257	1.16646	4.52879	1.37189	1.17537	1.5437	0.634565	1.02148	0	0.859864	0	0.621551	1.62072	2.77981	0	0.841278	2.39966	8.56657	1.1924	0	0.84814	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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