TCONS_00004960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004960
Unique NameTCONS_00004960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004960 ID=TCONS_00004960|Name=TCONS_00004960|organism=Clytia hemisphaerica|type=transcript|length=594bp
aaaaaacaatGACAGATTTTctccgagaaaagctggtaacgaacgagGTT
CATTTACAGGACAGGTAGCTCCAAAAACATAAAAGAAGTTTTCCACTCAT
TTTAGATGCACAAAAAGCTAGACGCATCCTAAtccttgtctgtacacaaa
cccgagataatcgtgagatacactctggtacacaCAGAGTACCTAATCCC
AGCCCGAGCTAAGTTCTGCATCGACAGGGCCGGGGAATCAGTTTTAAAGT
GAGGGGCCTAAATGATATATTGactaaggaggccccaccatggttggggc
ggACGGgcgggaaaatttttgaaattatggtaCTCTACATTGGCCTAGAA
GTgatctaaatttaatttttatgaagttattggaatgaaaaaatcaaaga
agttaGGCGTTTTTTTATACTGATAATCAGCAAAGAATATACTACTATAT
AATAACAAAATGAAACTAAATAAAGTCGATGAAGCGGACTTTTACATGTT
CAAAATTCATAAGTAAAAGTAGATTGAGGGTATGCTTTAACAGACAGTAA
ACATacagtaataaaaattaaaattgtccaAAGTAATTAAAGCG
Run BLAST on NCBI

transcript from alignment at sc0000049:486884..487477

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004960 ID=TCONS_00004960|Name=TCONS_00004960|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0000049:486884..487477 (Clytia hemisphaerica)
CGCTTTAATTACTTtggacaattttaatttttattactgtATGTTTACTG
TCTGTTAAAGCATACCCTCAATCTACTTTTACTTATGAATTTTGAACATG
TAAAAGTCCGCTTCATCGACTTTATTTAGTTTCATTTTGTTATTATATAG
TAGTATATTCTTTGCTGATTATCAGTATAAAAAAACGCCtaacttctttg
attttttcattccaataacttcataaaaattaaatttagatcACTTCTAG
GCCAATGTAGAGtaccataatttcaaaaattttcccgcCCGTccgcccca
accatggtggggcctccttagtCAATATATCATTTAGGCCCCTCACTTTA
AAACTGATTCCCCGGCCCTGTCGATGCAGAACTTAGCTCGGGCTGGGATT
AGGTACTCTGtgtgtaccagagtgtatctcacgattatctcgggtttgtg
tacagacaaggaTTAGGATGCGTCTAGCTTTTTGTGCATCTAAAATGAGT
GGAAAACTTCTTTTATGTTTTTGGAGCTACCTGTCCTGTAAATGAACctc
gttcgttaccagcttttctcggagAAAATCTGTCattgtttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002808XLOC_002808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004960-exon-sc0000049-1491911889:486884..487477TCONS_00004960-exon-sc0000049-1491911889:486884..487477Clytia hemisphaericaexon
TCONS_00004960-exon-sc0000049-1510915933:486884..487477TCONS_00004960-exon-sc0000049-1510915933:486884..487477Clytia hemisphaericaexon
TCONS_00004960-exon-sc0000049-1575043694:486884..487477TCONS_00004960-exon-sc0000049-1575043694:486884..487477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:486884..487477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132881	0.0898607	0.184201	0.102077	1.11216	0.294598	0.829313	1.02665	1.00949	1.25042	1.21048	0.52711	1.04603	0.242412	0.639448	0.544545	0.484236	0.425423	0.667496	0.417559	0.73421	1.04299	0.105657	0	1.48406	1.03833	1.08998	1.66908	1.00362	0.389302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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