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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004940 ID=TCONS_00004940|Name=TCONS_00004940|organism=Clytia hemisphaerica|type=transcript|length=2774bpRun BLAST on NCBI transcript from alignment at sc0000049:724250..781632- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004940 ID=TCONS_00004940|Name=TCONS_00004940|organism=Clytia hemisphaerica|type=transcript|length=57383bp|location=Sequence derived from alignment at sc0000049:724250..781632- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004940 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 5.489e-105 Identity = 226/667 (33.88%), Postives = 345/667 (51.72%), Query Frame = 1
Query: 637 QQPSLPLWLEQTDTQTLTIYEQTCXNPHYRYGWSKLTPKLLQFMNKPVWFLVFLCVAGVAQGLVVTGVAFTILTSIEKQFGFSSSHVALFGTVYDTAYGIFCVFIGYVGHR-HKPRFLGYGLIIMACGAVLTSVPKYIIGTYDVGTERDTDFCRFSVTSTHTPICGGSAEWY--YTLIFLAGNAMIGIGATPLYVLGPSHLDEITHRGQNALYTGIFYACAALGPALGFIIGLPILNTWVDLEQPANSNLTPEDRNWVGAWWIGYLVGAVIMLLPAAPMLGFPKLFPNAEKVKQAKS----ELEDTIEEDKNLNHNFK--------SVWPATKSLLKNIPFVCICLASATESLAIGGFSTFFSKFVETQFHVTSGSSSLYSGVIIIPXXXXXXXXXXXXINRYKWNCKQILRAASMMAFVAAVCVASTLIG-------CKGREVVGGDLPYANS----STISLQSGCNEYCQCSIRYYKPVCSVVDQQTYFSPCHAGCSNNHTVTIDGEKHFQNCSCVASLVKDG-------RCTPECNLFPLFFVCAFLMMFFTFMNNVPMLMATLRVVPEGQGSFAMGFQQIFVRFLGFIPAPTLFGSLIDKSCKLWHEDECTDSKTSCLEYENEDFRYYLFILGAVTKVLTFIFLFAAYKTYTLPPNKRDDSVR 2538
+QP LW E+ + GW P LQ +N P L FLC A QG+ V G T++TS+E+++ S L + YD A + F+ Y G HKPR+LG+G+++M G+++ ++P + G Y+V + C + +C S Y L+F+ G + G+GATPLY LG ++LDE + +Y IFY A LGPA G++IG +LN + ++ + + LT E WVGAWW+G+L A P+LG+P+ P +++ ++ +L+D+ + + N +F S+W LLKN F+ +CLA ATE+ I G STF KF+E+QF +++ ++ G +++P GG FLGGF +N+ + LR ++++ F C +L+G C + G Y S ++L + CN C C +Y PVC D YFS CHAGC +DG+K +++CSC+ + G +CT C PL V F+++FFTF++++P L ATLR V + Q SFA+G Q I VR LG IP P FG +IDK+C LW +D+C + SCL Y+N Y+ I+G + KVL +F A Y P ++ D +
Sbjct: 56 KQPLCQLWAEKHGARGTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTC----PANPGAVCADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGR--RTELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEAS-NPDFGKTIRDLPLSIW----LLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLR------LRGSAVIKFCL-FCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCGS-DGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSSGFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLW-QDQC-GQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYK-PLSESSDGLE 700 The following BLAST results are available for this feature:
BLAST of TCONS_00004940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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